EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDNOG00000010926 (Gene tree)
Gene ID: 101414784
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Dasypus_novemcinctus
Status: putative
Strand: Plus strand
Length: 14145 bases
Position: chrJH566248.1:2261199-2275343
Accession: 101414784
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDNOP00000008468	APOBEC_N	PF08210.11	1.5e-30	1	1
ENSDNOP00000034917	APOBEC_N	PF08210.11	1.5e-30	1	1
ENSDNOP00000008468	APOBEC_C	PF05240.14	8.4e-24	1	1
ENSDNOP00000034917	APOBEC_C	PF05240.14	8.4e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDNOT00000039047	APOBEC1-201	2351	-	ENSDNOP00000034917	236 (aa)	-	UPI0000E38FFD
ENSDNOT00000010918	APOBEC1-202	2093	XM_004455274	ENSDNOP00000008468	236 (aa)	XP_004455331	UPI0000E38FFD

Gene Model

Click here to download ENSDNOG00000010926's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDNOG00000010926's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDNOG00000010926	APOBEC1	56	40.146	ENSDNOG00000039749	-	61	40.146
ENSDNOG00000010926	APOBEC1	61	36.842	ENSDNOG00000044642	-	63	36.842

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDNOG00000010926	APOBEC1	100	79.661	ENSG00000111701	APOBEC1	100	79.661	Homo_sapiens
ENSDNOG00000010926	APOBEC1	99	76.395	ENSAMEG00000007098	APOBEC1	99	76.395	Ailuropoda_melanoleuca
ENSDNOG00000010926	APOBEC1	72	40.936	ENSACAG00000028578	-	93	40.936	Anolis_carolinensis
ENSDNOG00000010926	APOBEC1	100	78.814	ENSANAG00000027743	APOBEC1	95	78.814	Aotus_nancymaae
ENSDNOG00000010926	APOBEC1	100	71.186	ENSBTAG00000014683	APOBEC1	100	71.186	Bos_taurus
ENSDNOG00000010926	APOBEC1	94	77.376	ENSCJAG00000005398	APOBEC1	100	77.376	Callithrix_jacchus
ENSDNOG00000010926	APOBEC1	100	75.847	ENSCAFG00000013901	APOBEC1	100	75.847	Canis_familiaris
ENSDNOG00000010926	APOBEC1	96	75.221	ENSCAFG00020003511	APOBEC1	95	75.221	Canis_lupus_dingo
ENSDNOG00000010926	APOBEC1	98	71.552	ENSCHIG00000011898	APOBEC1	96	71.552	Capra_hircus
ENSDNOG00000010926	APOBEC1	59	83.453	ENSTSYG00000029141	APOBEC1	99	83.453	Carlito_syrichta
ENSDNOG00000010926	APOBEC1	91	66.355	ENSCAPG00000015882	-	99	66.355	Cavia_aperea
ENSDNOG00000010926	APOBEC1	99	65.532	ENSCPOG00000033068	APOBEC1	99	65.532	Cavia_porcellus
ENSDNOG00000010926	APOBEC1	100	79.661	ENSCCAG00000022258	APOBEC1	100	79.661	Cebus_capucinus
ENSDNOG00000010926	APOBEC1	100	80.932	ENSCATG00000021613	APOBEC1	95	80.932	Cercocebus_atys
ENSDNOG00000010926	APOBEC1	97	68.122	ENSCLAG00000014645	APOBEC1	99	68.122	Chinchilla_lanigera
ENSDNOG00000010926	APOBEC1	81	80.526	ENSCSAG00000009817	APOBEC1	99	80.526	Chlorocebus_sabaeus
ENSDNOG00000010926	APOBEC1	88	38.756	ENSCPBG00000014327	-	81	38.756	Chrysemys_picta_bellii
ENSDNOG00000010926	APOBEC1	86	44.550	ENSCPBG00000014328	-	92	44.550	Chrysemys_picta_bellii
ENSDNOG00000010926	APOBEC1	94	45.291	ENSCPBG00000014329	-	61	45.291	Chrysemys_picta_bellii
ENSDNOG00000010926	APOBEC1	78	48.128	ENSCPBG00000014331	-	77	48.128	Chrysemys_picta_bellii
ENSDNOG00000010926	APOBEC1	78	49.733	ENSCPBG00000014335	-	76	49.733	Chrysemys_picta_bellii
ENSDNOG00000010926	APOBEC1	77	43.548	ENSCPBG00000017398	-	82	43.548	Chrysemys_picta_bellii
ENSDNOG00000010926	APOBEC1	97	80.435	ENSCANG00000038359	APOBEC1	100	80.435	Colobus_angolensis_palliatus
ENSDNOG00000010926	APOBEC1	97	70.306	ENSCGRG00001011130	Apobec1	100	70.306	Cricetulus_griseus_chok1gshd
ENSDNOG00000010926	APOBEC1	97	70.306	ENSCGRG00000008644	Apobec1	100	70.306	Cricetulus_griseus_crigri
ENSDNOG00000010926	APOBEC1	90	64.019	ENSDORG00000023717	Apobec1	100	64.019	Dipodomys_ordii
ENSDNOG00000010926	APOBEC1	99	78.298	ENSETEG00000004867	APOBEC1	99	78.298	Echinops_telfairi
ENSDNOG00000010926	APOBEC1	98	80.603	ENSEASG00005015951	APOBEC1	97	80.603	Equus_asinus_asinus
ENSDNOG00000010926	APOBEC1	81	79.474	ENSECAG00000017163	APOBEC1	99	79.474	Equus_caballus
ENSDNOG00000010926	APOBEC1	93	63.348	ENSEEUG00000009112	-	98	63.348	Erinaceus_europaeus
ENSDNOG00000010926	APOBEC1	86	53.922	ENSEEUG00000007530	-	97	53.922	Erinaceus_europaeus
ENSDNOG00000010926	APOBEC1	100	79.661	ENSFCAG00000009350	APOBEC1	100	79.661	Felis_catus
ENSDNOG00000010926	APOBEC1	60	50.704	ENSFALG00000007257	-	70	50.704	Ficedula_albicollis
ENSDNOG00000010926	APOBEC1	88	56.039	ENSFDAG00000018470	APOBEC1	99	56.039	Fukomys_damarensis
ENSDNOG00000010926	APOBEC1	68	50.617	ENSGAGG00000004947	-	75	57.265	Gopherus_agassizii
ENSDNOG00000010926	APOBEC1	68	47.205	ENSGAGG00000006624	-	58	47.205	Gopherus_agassizii
ENSDNOG00000010926	APOBEC1	99	45.570	ENSGAGG00000011837	-	97	45.570	Gopherus_agassizii
ENSDNOG00000010926	APOBEC1	77	43.716	ENSGAGG00000021744	-	71	43.716	Gopherus_agassizii
ENSDNOG00000010926	APOBEC1	79	40.526	ENSGAGG00000021745	-	70	40.526	Gopherus_agassizii
ENSDNOG00000010926	APOBEC1	99	62.128	ENSHGLG00000001495	APOBEC1	99	62.128	Heterocephalus_glaber_female
ENSDNOG00000010926	APOBEC1	99	61.277	ENSHGLG00100002187	APOBEC1	99	61.277	Heterocephalus_glaber_male
ENSDNOG00000010926	APOBEC1	91	64.651	ENSSTOG00000021971	APOBEC1	100	84.694	Ictidomys_tridecemlineatus
ENSDNOG00000010926	APOBEC1	97	71.616	ENSJJAG00000022108	Apobec1	100	71.616	Jaculus_jaculus
ENSDNOG00000010926	APOBEC1	94	82.063	ENSLAFG00000030837	APOBEC1	100	82.063	Loxodonta_africana
ENSDNOG00000010926	APOBEC1	100	81.356	ENSMFAG00000000277	APOBEC1	100	81.356	Macaca_fascicularis
ENSDNOG00000010926	APOBEC1	100	81.356	ENSMNEG00000029670	APOBEC1	100	81.356	Macaca_nemestrina
ENSDNOG00000010926	APOBEC1	100	80.932	ENSMLEG00000036301	APOBEC1	100	80.932	Mandrillus_leucophaeus
ENSDNOG00000010926	APOBEC1	92	70.370	ENSMAUG00000022167	Apobec1	97	70.370	Mesocricetus_auratus
ENSDNOG00000010926	APOBEC1	100	76.695	ENSMICG00000043645	APOBEC1	100	76.695	Microcebus_murinus
ENSDNOG00000010926	APOBEC1	100	66.102	ENSMODG00000018004	APOBEC1	100	66.102	Monodelphis_domestica
ENSDNOG00000010926	APOBEC1	97	69.737	ENSMUSG00000040613	Apobec1	100	71.074	Mus_musculus
ENSDNOG00000010926	APOBEC1	97	68.860	MGP_PahariEiJ_G0022580	-	100	70.248	Mus_pahari
ENSDNOG00000010926	APOBEC1	97	69.737	MGP_SPRETEiJ_G0029857	Apobec1	100	71.074	Mus_spretus
ENSDNOG00000010926	APOBEC1	100	73.729	ENSMPUG00000017532	APOBEC1	100	73.729	Mustela_putorius_furo
ENSDNOG00000010926	APOBEC1	97	69.432	ENSNGAG00000022607	Apobec1	100	69.432	Nannospalax_galili
ENSDNOG00000010926	APOBEC1	100	79.661	ENSNLEG00000005342	APOBEC1	100	79.661	Nomascus_leucogenys
ENSDNOG00000010926	APOBEC1	100	65.678	ENSMEUG00000013406	APOBEC1	100	65.678	Notamacropus_eugenii
ENSDNOG00000010926	APOBEC1	77	65.746	ENSOPRG00000009508	-	100	65.746	Ochotona_princeps
ENSDNOG00000010926	APOBEC1	100	72.458	ENSOCUG00000025736	APOBEC1	88	72.458	Oryctolagus_cuniculus
ENSDNOG00000010926	APOBEC1	98	76.293	ENSOGAG00000026415	APOBEC1	98	76.293	Otolemur_garnettii
ENSDNOG00000010926	APOBEC1	100	71.186	ENSOARG00000002072	APOBEC1	99	71.186	Ovis_aries
ENSDNOG00000010926	APOBEC1	99	74.678	ENSPPAG00000027657	APOBEC1	99	74.678	Pan_paniscus
ENSDNOG00000010926	APOBEC1	100	80.085	ENSPPRG00000012182	APOBEC1	100	80.085	Panthera_pardus
ENSDNOG00000010926	APOBEC1	100	80.085	ENSPTIG00000020280	APOBEC1	100	80.085	Panthera_tigris_altaica
ENSDNOG00000010926	APOBEC1	100	80.932	ENSPTRG00000004614	APOBEC1	100	80.932	Pan_troglodytes
ENSDNOG00000010926	APOBEC1	100	80.508	ENSPANG00000021027	APOBEC1	100	80.508	Papio_anubis
ENSDNOG00000010926	APOBEC1	53	48.649	ENSPSIG00000012791	-	71	48.649	Pelodiscus_sinensis
ENSDNOG00000010926	APOBEC1	78	44.324	ENSPSIG00000012568	-	80	44.324	Pelodiscus_sinensis
ENSDNOG00000010926	APOBEC1	97	71.179	ENSPEMG00000023841	Apobec1	100	71.179	Peromyscus_maniculatus_bairdii
ENSDNOG00000010926	APOBEC1	100	69.492	ENSPCIG00000023973	APOBEC1	100	69.492	Phascolarctos_cinereus
ENSDNOG00000010926	APOBEC1	100	79.237	ENSPPYG00000004228	APOBEC1	95	79.237	Pongo_abelii
ENSDNOG00000010926	APOBEC1	79	82.353	ENSPCAG00000008733	APOBEC1	100	82.353	Procavia_capensis
ENSDNOG00000010926	APOBEC1	94	78.829	ENSPCOG00000013957	APOBEC1	98	78.829	Propithecus_coquereli
ENSDNOG00000010926	APOBEC1	100	63.136	ENSPVAG00000010709	APOBEC1	100	63.136	Pteropus_vampyrus
ENSDNOG00000010926	APOBEC1	97	69.737	ENSRNOG00000015411	Apobec1	99	69.737	Rattus_norvegicus
ENSDNOG00000010926	APOBEC1	100	78.814	ENSRBIG00000031161	APOBEC1	100	78.814	Rhinopithecus_bieti
ENSDNOG00000010926	APOBEC1	100	78.814	ENSRROG00000033576	APOBEC1	100	78.814	Rhinopithecus_roxellana
ENSDNOG00000010926	APOBEC1	73	82.659	ENSSBOG00000030587	APOBEC1	98	82.659	Saimiri_boliviensis_boliviensis
ENSDNOG00000010926	APOBEC1	96	68.722	ENSSHAG00000008925	APOBEC1	99	68.722	Sarcophilus_harrisii
ENSDNOG00000010926	APOBEC1	73	68.605	ENSSARG00000000032	-	100	68.605	Sorex_araneus
ENSDNOG00000010926	APOBEC1	56	74.046	ENSSARG00000011972	-	99	74.046	Sorex_araneus
ENSDNOG00000010926	APOBEC1	86	42.995	ENSSPUG00000009044	-	79	42.995	Sphenodon_punctatus
ENSDNOG00000010926	APOBEC1	100	75.424	ENSSSCG00000000668	APOBEC1	100	75.424	Sus_scrofa
ENSDNOG00000010926	APOBEC1	61	53.425	ENSTGUG00000013118	-	100	53.425	Taeniopygia_guttata
ENSDNOG00000010926	APOBEC1	94	74.661	ENSTBEG00000010043	APOBEC1	94	74.661	Tupaia_belangeri
ENSDNOG00000010926	APOBEC1	79	77.005	ENSTTRG00000014015	APOBEC1	100	77.005	Tursiops_truncatus
ENSDNOG00000010926	APOBEC1	99	76.395	ENSUAMG00000011636	APOBEC1	95	76.395	Ursus_americanus
ENSDNOG00000010926	APOBEC1	99	76.395	ENSUMAG00000016552	APOBEC1	95	76.395	Ursus_maritimus
ENSDNOG00000010926	APOBEC1	100	72.458	ENSVPAG00000001343	APOBEC1	100	72.458	Vicugna_pacos
ENSDNOG00000010926	APOBEC1	100	75.424	ENSVVUG00000010522	APOBEC1	100	75.424	Vulpes_vulpes