EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDNOG00000011078 (Gene tree)
Gene ID: 101426431
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Dasypus_novemcinctus
Status: putative
Strand: Minus strand
Length: 74232 bases
Position: chrJH561405.1:517823-592054
Accession: 101426431
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDNOP00000008593	RRM_1	PF00076.22	2.5e-32	1	2
ENSDNOP00000008593	RRM_1	PF00076.22	2.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDNOT00000011078	PSPC1-201	4650	-	ENSDNOP00000008593	523 (aa)	XP_004446767	UPI000328DBB6

Gene Model

Click here to download ENSDNOG00000011078's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDNOG00000011078's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDNOG00000011078	PSPC1	90	57.829	ENSDNOG00000049454	SFPQ	51	68.579
ENSDNOG00000011078	PSPC1	55	50.476	ENSDNOG00000031430	-	82	50.476
ENSDNOG00000011078	PSPC1	57	52.013	ENSDNOG00000032215	-	88	55.253

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDNOG00000011078	PSPC1	100	96.941	ENSG00000121390	PSPC1	100	96.941	Homo_sapiens
ENSDNOG00000011078	PSPC1	91	69.450	ENSAPOG00000015946	pspc1	89	68.313	Acanthochromis_polyacanthus
ENSDNOG00000011078	PSPC1	100	96.558	ENSAMEG00000017420	PSPC1	100	96.558	Ailuropoda_melanoleuca
ENSDNOG00000011078	PSPC1	99	57.169	ENSACIG00000018695	pspc1	87	59.448	Amphilophus_citrinellus
ENSDNOG00000011078	PSPC1	91	68.560	ENSAOCG00000005279	pspc1	80	72.893	Amphiprion_ocellaris
ENSDNOG00000011078	PSPC1	91	69.628	ENSAPEG00000015927	pspc1	80	72.893	Amphiprion_percula
ENSDNOG00000011078	PSPC1	89	57.839	ENSATEG00000004878	pspc1	76	62.350	Anabas_testudineus
ENSDNOG00000011078	PSPC1	77	93.564	ENSAPLG00000006246	PSPC1	100	93.564	Anas_platyrhynchos
ENSDNOG00000011078	PSPC1	89	60.684	ENSAPLG00000003643	SFPQ	70	68.750	Anas_platyrhynchos
ENSDNOG00000011078	PSPC1	99	82.746	ENSACAG00000002093	PSPC1	88	91.863	Anolis_carolinensis
ENSDNOG00000011078	PSPC1	90	52.292	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSDNOG00000011078	PSPC1	100	96.750	ENSANAG00000000059	PSPC1	100	96.750	Aotus_nancymaae
ENSDNOG00000011078	PSPC1	99	57.301	ENSACLG00000027220	pspc1	87	58.887	Astatotilapia_calliptera
ENSDNOG00000011078	PSPC1	99	63.803	ENSAMXG00000036881	pspc1	89	69.753	Astyanax_mexicanus
ENSDNOG00000011078	PSPC1	100	95.992	ENSBTAG00000003934	PSPC1	100	95.992	Bos_taurus
ENSDNOG00000011078	PSPC1	100	96.750	ENSCJAG00000004554	PSPC1	100	96.750	Callithrix_jacchus
ENSDNOG00000011078	PSPC1	100	96.558	ENSCAFG00020002009	PSPC1	100	96.558	Canis_lupus_dingo
ENSDNOG00000011078	PSPC1	100	95.992	ENSCHIG00000016708	PSPC1	100	95.992	Capra_hircus
ENSDNOG00000011078	PSPC1	80	87.678	ENSTSYG00000032882	PSPC1	93	85.036	Carlito_syrichta
ENSDNOG00000011078	PSPC1	100	95.411	ENSCPOG00000000395	PSPC1	100	95.411	Cavia_porcellus
ENSDNOG00000011078	PSPC1	100	96.750	ENSCCAG00000033498	PSPC1	100	96.750	Cebus_capucinus
ENSDNOG00000011078	PSPC1	100	96.941	ENSCATG00000036434	PSPC1	100	96.941	Cercocebus_atys
ENSDNOG00000011078	PSPC1	88	87.689	ENSCLAG00000005241	PSPC1	99	87.689	Chinchilla_lanigera
ENSDNOG00000011078	PSPC1	100	93.117	ENSCHOG00000008913	PSPC1	100	92.925	Choloepus_hoffmanni
ENSDNOG00000011078	PSPC1	99	86.907	ENSCPBG00000020859	PSPC1	99	87.669	Chrysemys_picta_bellii
ENSDNOG00000011078	PSPC1	63	55.891	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSDNOG00000011078	PSPC1	77	84.938	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSDNOG00000011078	PSPC1	100	95.793	ENSCGRG00001018368	Pspc1	100	95.602	Cricetulus_griseus_chok1gshd
ENSDNOG00000011078	PSPC1	100	95.793	ENSCGRG00000011724	Pspc1	100	95.602	Cricetulus_griseus_crigri
ENSDNOG00000011078	PSPC1	90	65.344	ENSCVAG00000007679	-	86	65.659	Cyprinodon_variegatus
ENSDNOG00000011078	PSPC1	99	66.171	ENSDARG00000006621	pspc1	100	67.633	Danio_rerio
ENSDNOG00000011078	PSPC1	100	93.308	ENSDORG00000016050	Pspc1	100	93.308	Dipodomys_ordii
ENSDNOG00000011078	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSDNOG00000011078	PSPC1	59	45.833	ENSEBUG00000010133	pspc1	75	49.653	Eptatretus_burgeri
ENSDNOG00000011078	PSPC1	88	58.884	ENSEBUG00000003964	-	63	71.429	Eptatretus_burgeri
ENSDNOG00000011078	PSPC1	100	96.558	ENSEASG00005000119	PSPC1	100	96.558	Equus_asinus_asinus
ENSDNOG00000011078	PSPC1	100	96.558	ENSECAG00000017286	PSPC1	100	96.558	Equus_caballus
ENSDNOG00000011078	PSPC1	73	91.803	ENSEEUG00000011288	-	100	64.627	Erinaceus_europaeus
ENSDNOG00000011078	PSPC1	91	70.408	ENSELUG00000003746	pspc1	78	82.154	Esox_lucius
ENSDNOG00000011078	PSPC1	100	96.558	ENSFCAG00000027841	PSPC1	100	96.558	Felis_catus
ENSDNOG00000011078	PSPC1	89	94.433	ENSFALG00000008750	PSPC1	99	87.572	Ficedula_albicollis
ENSDNOG00000011078	PSPC1	100	94.073	ENSFDAG00000002617	PSPC1	100	94.073	Fukomys_damarensis
ENSDNOG00000011078	PSPC1	88	66.738	ENSGMOG00000015074	pspc1	86	65.672	Gadus_morhua
ENSDNOG00000011078	PSPC1	88	95.022	ENSGALG00000017142	PSPC1	89	94.433	Gallus_gallus
ENSDNOG00000011078	PSPC1	66	74.499	ENSGAFG00000006327	pspc1	68	77.439	Gambusia_affinis
ENSDNOG00000011078	PSPC1	88	65.733	ENSGACG00000014901	pspc1	92	73.394	Gasterosteus_aculeatus
ENSDNOG00000011078	PSPC1	99	86.907	ENSGAGG00000019164	PSPC1	99	87.669	Gopherus_agassizii
ENSDNOG00000011078	PSPC1	89	60.256	ENSGAGG00000017325	-	56	68.207	Gopherus_agassizii
ENSDNOG00000011078	PSPC1	100	96.750	ENSGGOG00000003414	PSPC1	100	96.750	Gorilla_gorilla
ENSDNOG00000011078	PSPC1	99	64.564	ENSHBUG00000001139	pspc1	100	64.299	Haplochromis_burtoni
ENSDNOG00000011078	PSPC1	100	95.411	ENSHGLG00000018811	PSPC1	100	94.837	Heterocephalus_glaber_female
ENSDNOG00000011078	PSPC1	67	92.000	ENSHGLG00100007962	PSPC1	100	92.000	Heterocephalus_glaber_male
ENSDNOG00000011078	PSPC1	77	67.225	ENSHCOG00000013251	pspc1	82	69.973	Hippocampus_comes
ENSDNOG00000011078	PSPC1	91	72.541	ENSIPUG00000013192	pspc1	88	73.885	Ictalurus_punctatus
ENSDNOG00000011078	PSPC1	100	96.941	ENSSTOG00000026833	PSPC1	100	96.941	Ictidomys_tridecemlineatus
ENSDNOG00000011078	PSPC1	100	96.367	ENSJJAG00000018334	Pspc1	100	96.558	Jaculus_jaculus
ENSDNOG00000011078	PSPC1	88	55.508	ENSKMAG00000013525	-	84	54.624	Kryptolebias_marmoratus
ENSDNOG00000011078	PSPC1	96	64.368	ENSLBEG00000004474	pspc1	76	72.381	Labrus_bergylta
ENSDNOG00000011078	PSPC1	99	76.111	ENSLACG00000010762	PSPC1	88	85.097	Latimeria_chalumnae
ENSDNOG00000011078	PSPC1	88	84.165	ENSLOCG00000010832	pspc1	91	84.165	Lepisosteus_oculatus
ENSDNOG00000011078	PSPC1	100	96.941	ENSLAFG00000010968	PSPC1	100	96.941	Loxodonta_africana
ENSDNOG00000011078	PSPC1	100	97.132	ENSMFAG00000032728	PSPC1	100	97.132	Macaca_fascicularis
ENSDNOG00000011078	PSPC1	100	97.132	ENSMMUG00000020262	PSPC1	100	97.132	Macaca_mulatta
ENSDNOG00000011078	PSPC1	100	97.132	ENSMNEG00000027401	PSPC1	100	97.132	Macaca_nemestrina
ENSDNOG00000011078	PSPC1	81	100.000	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSDNOG00000011078	PSPC1	90	66.465	ENSMAMG00000004333	pspc1	88	62.025	Mastacembelus_armatus
ENSDNOG00000011078	PSPC1	99	57.301	ENSMZEG00005005726	pspc1	87	58.887	Maylandia_zebra
ENSDNOG00000011078	PSPC1	77	93.350	ENSMGAG00000015134	PSPC1	100	93.350	Meleagris_gallopavo
ENSDNOG00000011078	PSPC1	88	90.476	ENSMAUG00000021067	Pspc1	99	90.260	Mesocricetus_auratus
ENSDNOG00000011078	PSPC1	100	96.941	ENSMICG00000013970	PSPC1	100	96.941	Microcebus_murinus
ENSDNOG00000011078	PSPC1	100	96.176	ENSMOCG00000006060	Pspc1	100	95.985	Microtus_ochrogaster
ENSDNOG00000011078	PSPC1	65	54.493	ENSMMOG00000004352	pspc1	58	52.744	Mola_mola
ENSDNOG00000011078	PSPC1	93	95.876	ENSMODG00000008029	PSPC1	78	95.876	Monodelphis_domestica
ENSDNOG00000011078	PSPC1	88	69.528	ENSMALG00000008914	pspc1	89	67.715	Monopterus_albus
ENSDNOG00000011078	PSPC1	100	96.183	MGP_CAROLIEiJ_G0019341	Pspc1	100	95.992	Mus_caroli
ENSDNOG00000011078	PSPC1	100	96.374	ENSMUSG00000021938	Pspc1	100	96.183	Mus_musculus
ENSDNOG00000011078	PSPC1	100	96.565	MGP_PahariEiJ_G0030359	Pspc1	100	96.374	Mus_pahari
ENSDNOG00000011078	PSPC1	100	96.183	MGP_SPRETEiJ_G0020232	Pspc1	100	95.992	Mus_spretus
ENSDNOG00000011078	PSPC1	100	96.176	ENSMPUG00000013347	PSPC1	100	96.176	Mustela_putorius_furo
ENSDNOG00000011078	PSPC1	100	95.057	ENSMLUG00000017663	PSPC1	100	95.247	Myotis_lucifugus
ENSDNOG00000011078	PSPC1	100	95.985	ENSNGAG00000011271	Pspc1	100	95.793	Nannospalax_galili
ENSDNOG00000011078	PSPC1	74	64.573	ENSNBRG00000014059	pspc1	92	62.183	Neolamprologus_brichardi
ENSDNOG00000011078	PSPC1	100	96.941	ENSNLEG00000001294	PSPC1	100	96.941	Nomascus_leucogenys
ENSDNOG00000011078	PSPC1	100	75.717	ENSMEUG00000000476	PSPC1	100	75.717	Notamacropus_eugenii
ENSDNOG00000011078	PSPC1	100	84.512	ENSODEG00000007817	-	100	80.151	Octodon_degus
ENSDNOG00000011078	PSPC1	100	84.542	ENSODEG00000019012	-	100	85.066	Octodon_degus
ENSDNOG00000011078	PSPC1	99	64.564	ENSONIG00000012010	pspc1	99	63.586	Oreochromis_niloticus
ENSDNOG00000011078	PSPC1	99	66.031	ENSOANG00000011381	-	99	65.458	Ornithorhynchus_anatinus
ENSDNOG00000011078	PSPC1	76	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSDNOG00000011078	PSPC1	100	97.132	ENSOCUG00000006153	PSPC1	100	97.132	Oryctolagus_cuniculus
ENSDNOG00000011078	PSPC1	88	70.000	ENSORLG00000004232	-	87	64.596	Oryzias_latipes
ENSDNOG00000011078	PSPC1	89	69.053	ENSORLG00020000578	PSPC1	88	65.966	Oryzias_latipes_hni
ENSDNOG00000011078	PSPC1	88	70.426	ENSORLG00015017480	pspc1	82	69.108	Oryzias_latipes_hsok
ENSDNOG00000011078	PSPC1	100	97.514	ENSOGAG00000012643	PSPC1	100	97.514	Otolemur_garnettii
ENSDNOG00000011078	PSPC1	100	90.857	ENSOARG00000014163	PSPC1	100	90.857	Ovis_aries
ENSDNOG00000011078	PSPC1	89	91.416	ENSPPAG00000009836	PSPC1	98	95.115	Pan_paniscus
ENSDNOG00000011078	PSPC1	100	96.558	ENSPPRG00000008833	PSPC1	100	96.558	Panthera_pardus
ENSDNOG00000011078	PSPC1	100	82.218	ENSPTIG00000016917	PSPC1	100	82.218	Panthera_tigris_altaica
ENSDNOG00000011078	PSPC1	98	95.331	ENSPTRG00000005677	PSPC1	99	96.914	Pan_troglodytes
ENSDNOG00000011078	PSPC1	100	97.132	ENSPANG00000001992	PSPC1	100	97.132	Papio_anubis
ENSDNOG00000011078	PSPC1	81	78.588	ENSPKIG00000003578	pspc1	89	73.474	Paramormyrops_kingsleyae
ENSDNOG00000011078	PSPC1	99	86.252	ENSPSIG00000005168	PSPC1	99	86.064	Pelodiscus_sinensis
ENSDNOG00000011078	PSPC1	59	71.019	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSDNOG00000011078	PSPC1	100	96.367	ENSPEMG00000015214	Pspc1	100	96.176	Peromyscus_maniculatus_bairdii
ENSDNOG00000011078	PSPC1	99	96.169	ENSPCIG00000017680	PSPC1	100	96.169	Phascolarctos_cinereus
ENSDNOG00000011078	PSPC1	95	65.564	ENSPFOG00000003362	pspc1	88	68.344	Poecilia_formosa
ENSDNOG00000011078	PSPC1	95	65.564	ENSPLAG00000011540	pspc1	87	68.344	Poecilia_latipinna
ENSDNOG00000011078	PSPC1	70	64.324	ENSPLAG00000004407	-	52	60.377	Poecilia_latipinna
ENSDNOG00000011078	PSPC1	68	64.835	ENSPMEG00000001025	-	51	60.377	Poecilia_mexicana
ENSDNOG00000011078	PSPC1	95	65.175	ENSPMEG00000008322	pspc1	87	67.925	Poecilia_mexicana
ENSDNOG00000011078	PSPC1	95	65.564	ENSPREG00000007786	pspc1	87	67.925	Poecilia_reticulata
ENSDNOG00000011078	PSPC1	100	96.558	ENSPPYG00000005186	PSPC1	100	96.558	Pongo_abelii
ENSDNOG00000011078	PSPC1	67	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSDNOG00000011078	PSPC1	100	92.734	ENSPCOG00000014364	PSPC1	100	92.734	Propithecus_coquereli
ENSDNOG00000011078	PSPC1	100	93.308	ENSPVAG00000005036	PSPC1	100	94.073	Pteropus_vampyrus
ENSDNOG00000011078	PSPC1	99	57.486	ENSPNYG00000008893	pspc1	100	54.851	Pundamilia_nyererei
ENSDNOG00000011078	PSPC1	99	67.039	ENSPNAG00000016511	pspc1	89	73.036	Pygocentrus_nattereri
ENSDNOG00000011078	PSPC1	100	96.176	ENSRNOG00000020782	Pspc1	100	95.985	Rattus_norvegicus
ENSDNOG00000011078	PSPC1	93	96.920	ENSRBIG00000036057	PSPC1	100	96.920	Rhinopithecus_bieti
ENSDNOG00000011078	PSPC1	100	96.941	ENSRROG00000036334	PSPC1	100	96.941	Rhinopithecus_roxellana
ENSDNOG00000011078	PSPC1	79	88.378	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSDNOG00000011078	PSPC1	100	90.857	ENSSHAG00000004696	PSPC1	100	90.857	Sarcophilus_harrisii
ENSDNOG00000011078	PSPC1	81	79.529	ENSSFOG00015001395	pspc1	89	78.972	Scleropages_formosus
ENSDNOG00000011078	PSPC1	96	64.093	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSDNOG00000011078	PSPC1	89	68.889	ENSSDUG00000010651	pspc1	76	74.537	Seriola_dumerili
ENSDNOG00000011078	PSPC1	89	64.301	ENSSLDG00000004284	pspc1	87	59.789	Seriola_lalandi_dorsalis
ENSDNOG00000011078	PSPC1	100	88.145	ENSSARG00000000888	PSPC1	100	88.337	Sorex_araneus
ENSDNOG00000011078	PSPC1	89	53.571	ENSSPUG00000001136	-	53	61.345	Sphenodon_punctatus
ENSDNOG00000011078	PSPC1	99	74.811	ENSSPUG00000008550	PSPC1	99	75.432	Sphenodon_punctatus
ENSDNOG00000011078	PSPC1	96	64.325	ENSSPAG00000001921	pspc1	89	66.599	Stegastes_partitus
ENSDNOG00000011078	PSPC1	100	95.220	ENSSSCG00000009569	PSPC1	100	94.847	Sus_scrofa
ENSDNOG00000011078	PSPC1	89	94.433	ENSTGUG00000011295	PSPC1	100	94.433	Taeniopygia_guttata
ENSDNOG00000011078	PSPC1	88	63.482	ENSTRUG00000011335	pspc1	87	62.232	Takifugu_rubripes
ENSDNOG00000011078	PSPC1	89	64.957	ENSTNIG00000010358	pspc1	88	64.026	Tetraodon_nigroviridis
ENSDNOG00000011078	PSPC1	100	76.673	ENSTBEG00000002361	PSPC1	100	75.526	Tupaia_belangeri
ENSDNOG00000011078	PSPC1	100	95.793	ENSTTRG00000003343	PSPC1	100	95.793	Tursiops_truncatus
ENSDNOG00000011078	PSPC1	67	96.296	ENSUAMG00000012309	PSPC1	100	96.296	Ursus_americanus
ENSDNOG00000011078	PSPC1	93	96.715	ENSUMAG00000013993	PSPC1	100	96.715	Ursus_maritimus
ENSDNOG00000011078	PSPC1	76	98.747	ENSVPAG00000010029	PSPC1	100	98.747	Vicugna_pacos
ENSDNOG00000011078	PSPC1	100	96.558	ENSVVUG00000006414	PSPC1	100	96.632	Vulpes_vulpes
ENSDNOG00000011078	PSPC1	68	71.274	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSDNOG00000011078	PSPC1	68	71.545	ENSXMAG00000007929	pspc1	78	76.829	Xiphophorus_maculatus