EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSDORG00000000237 (Gene tree)
Gene ID
105995538
Gene Symbol
Patl1
Alias
-
Full Name
PAT1 homolog 1%2C processing body mRNA decay factor
Gene Type
protein_coding
Species
Dipodomys_ordii
Status
putative
Strand
Plus strand
Length
29541 bases
Position
chrKN672463.1:2340269-2369809
Accession
105995538
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDORP00000020981PAT1PF09770.98.9e-1811
ENSDORP00000000219PAT1PF09770.92.4e-0911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDORT00000023520-4029XM_013029289ENSDORP00000020981770 (aa)XP_012884743A0A1S3G7D3
ENSDORT00000000238-1881-ENSDORP00000000219626 (aa)-UPI000BAD1F14
Gene Model
Click here to download ENSDORG00000000237's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000000237's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDORG00000000237Patl15136.061ENSDORG00000026649Patl27235.038
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDORG00000000237Patl110096.234ENSG00000166889PATL110096.234Homo_sapiens
ENSDORG00000000237Patl16335.102ENSG00000229474PATL29937.637Homo_sapiens
ENSDORG00000000237Patl16833.764ENSAPOG00000022988patl26333.755Acanthochromis_polyacanthus
ENSDORG00000000237Patl15451.559ENSAPOG00000021290patl19845.238Acanthochromis_polyacanthus
ENSDORG00000000237Patl110094.942ENSAMEG00000014215PATL110094.034Ailuropoda_melanoleuca
ENSDORG00000000237Patl16234.568ENSAMEG00000014997PATL27535.437Ailuropoda_melanoleuca
ENSDORG00000000237Patl19645.501ENSACIG00000005182patl19946.020Amphilophus_citrinellus
ENSDORG00000000237Patl18731.332ENSAOCG00000023738patl25633.196Amphiprion_ocellaris
ENSDORG00000000237Patl16266.667ENSAPEG00000021391patl18161.111Amphiprion_percula
ENSDORG00000000237Patl16733.843ENSAPEG00000011299patl27132.220Amphiprion_percula
ENSDORG00000000237Patl16433.992ENSATEG00000019567patl27033.531Anabas_testudineus
ENSDORG00000000237Patl17778.788ENSATEG00000002230patl18066.667Anabas_testudineus
ENSDORG00000000237Patl17170.109ENSAPLG00000013394PATL19970.310Anas_platyrhynchos
ENSDORG00000000237Patl15339.225ENSAPLG00000003980PATL26439.225Anas_platyrhynchos
ENSDORG00000000237Patl19980.415ENSACAG00000006607PATL19979.637Anolis_carolinensis
ENSDORG00000000237Patl110096.364ENSANAG00000023078PATL110096.364Aotus_nancymaae
ENSDORG00000000237Patl16268.333ENSACLG00000005144patl18449.464Astatotilapia_calliptera
ENSDORG00000000237Patl18731.416ENSACLG00000010326patl25435.952Astatotilapia_calliptera
ENSDORG00000000237Patl19940.428ENSAMXG00000010731patl19946.163Astyanax_mexicanus
ENSDORG00000000237Patl17534.805ENSAMXG00000020293patl26335.220Astyanax_mexicanus
ENSDORG00000000237Patl110094.812ENSBTAG00000005913PATL110094.812Bos_taurus
ENSDORG00000000237Patl110096.364ENSCJAG00000016192PATL110096.364Callithrix_jacchus
ENSDORG00000000237Patl16335.102ENSCJAG00000002379PATL27237.198Callithrix_jacchus
ENSDORG00000000237Patl110095.720ENSCAFG00000007581PATL110094.812Canis_familiaris
ENSDORG00000000237Patl16434.921ENSCAFG00000013629PATL27236.473Canis_familiaris
ENSDORG00000000237Patl16434.921ENSCAFG00020022169PATL27236.473Canis_lupus_dingo
ENSDORG00000000237Patl19995.686ENSCAFG00020001648PATL110094.771Canis_lupus_dingo
ENSDORG00000000237Patl16237.603ENSCHIG00000026665PATL27438.955Capra_hircus
ENSDORG00000000237Patl110093.515ENSCHIG00000025913PATL110093.515Capra_hircus
ENSDORG00000000237Patl19995.567ENSTSYG00000012748PATL19695.567Carlito_syrichta
ENSDORG00000000237Patl110090.415ENSCAPG00000013668PATL19990.415Cavia_aperea
ENSDORG00000000237Patl110088.734ENSCPOG00000006827PATL110088.861Cavia_porcellus
ENSDORG00000000237Patl110096.623ENSCCAG00000023759PATL110096.623Cebus_capucinus
ENSDORG00000000237Patl110096.364ENSCATG00000009629PATL110096.364Cercocebus_atys
ENSDORG00000000237Patl15535.198ENSCLAG00000014407PATL27335.714Chinchilla_lanigera
ENSDORG00000000237Patl19991.765ENSCLAG00000003427PATL110091.765Chinchilla_lanigera
ENSDORG00000000237Patl19096.115ENSCSAG00000006095PATL110096.115Chlorocebus_sabaeus
ENSDORG00000000237Patl16895.305ENSCHOG00000001611PATL18495.305Choloepus_hoffmanni
ENSDORG00000000237Patl15339.320ENSCPBG00000006150PATL25938.741Chrysemys_picta_bellii
ENSDORG00000000237Patl16335.102ENSCANG00000013856PATL27437.002Colobus_angolensis_palliatus
ENSDORG00000000237Patl19996.489ENSCANG00000039197PATL19996.880Colobus_angolensis_palliatus
ENSDORG00000000237Patl110095.714ENSCGRG00001024927Patl110095.714Cricetulus_griseus_chok1gshd
ENSDORG00000000237Patl110095.201ENSCGRG00000000461Patl110095.686Cricetulus_griseus_crigri
ENSDORG00000000237Patl16234.167ENSCSEG00000009438patl26333.333Cynoglossus_semilaevis
ENSDORG00000000237Patl19263.333ENSCSEG00000008261patl18252.326Cynoglossus_semilaevis
ENSDORG00000000237Patl18951.559ENSCVAG00000006664patl110046.641Cyprinodon_variegatus
ENSDORG00000000237Patl16030.882ENSCVAG00000016203patl26330.787Cyprinodon_variegatus
ENSDORG00000000237Patl19946.117ENSDARG00000017423patl110045.521Danio_rerio
ENSDORG00000000237Patl17234.331ENSDARG00000089567patl26435.119Danio_rerio
ENSDORG00000000237Patl19989.034ENSDNOG00000038865PATL19893.186Dasypus_novemcinctus
ENSDORG00000000237Patl110095.466ENSEASG00005007963PATL110095.466Equus_asinus_asinus
ENSDORG00000000237Patl110095.337ENSECAG00000011411PATL110095.337Equus_caballus
ENSDORG00000000237Patl17477.419ENSELUG00000024249patl19944.836Esox_lucius
ENSDORG00000000237Patl16933.333ENSELUG00000023244patl25435.167Esox_lucius
ENSDORG00000000237Patl110095.455ENSFCAG00000015573PATL110095.455Felis_catus
ENSDORG00000000237Patl16434.146ENSFCAG00000027170PATL27335.990Felis_catus
ENSDORG00000000237Patl19632.398ENSFALG00000009768PATL25538.257Ficedula_albicollis
ENSDORG00000000237Patl19979.400ENSFALG00000012150PATL19978.329Ficedula_albicollis
ENSDORG00000000237Patl19991.242ENSFDAG00000016128PATL110090.980Fukomys_damarensis
ENSDORG00000000237Patl15134.171ENSFDAG00000012242PATL27335.427Fukomys_damarensis
ENSDORG00000000237Patl16268.333ENSFHEG00000017790patl18359.722Fundulus_heteroclitus
ENSDORG00000000237Patl16130.801ENSGMOG00000005666patl29932.614Gadus_morhua
ENSDORG00000000237Patl19977.124ENSGALG00000042641PATL110076.993Gallus_gallus
ENSDORG00000000237Patl18633.137ENSGAFG00000019344patl25536.867Gambusia_affinis
ENSDORG00000000237Patl16460.274ENSGAFG00000006508patl18460.274Gambusia_affinis
ENSDORG00000000237Patl19947.815ENSGACG00000016448patl19948.914Gasterosteus_aculeatus
ENSDORG00000000237Patl110083.312ENSGAGG00000004461PATL110083.954Gopherus_agassizii
ENSDORG00000000237Patl110096.234ENSGGOG00000004335PATL110096.234Gorilla_gorilla
ENSDORG00000000237Patl16335.306ENSGGOG00000025923PATL27437.002Gorilla_gorilla
ENSDORG00000000237Patl16234.298ENSHBUG00000005929patl26135.800Haplochromis_burtoni
ENSDORG00000000237Patl16268.333ENSHBUG00000005365patl18449.541Haplochromis_burtoni
ENSDORG00000000237Patl110092.208ENSHGLG00000018173PATL110092.208Heterocephalus_glaber_female
ENSDORG00000000237Patl19990.719ENSHGLG00100003453PATL110090.719Heterocephalus_glaber_male
ENSDORG00000000237Patl19266.667ENSHCOG00000001898patl18255.696Hippocampus_comes
ENSDORG00000000237Patl19730.165ENSHCOG00000016754patl26033.612Hippocampus_comes
ENSDORG00000000237Patl19896.570ENSSTOG00000013764PATL19996.570Ictidomys_tridecemlineatus
ENSDORG00000000237Patl15936.166ENSSTOG00000033848PATL27237.019Ictidomys_tridecemlineatus
ENSDORG00000000237Patl19994.764ENSJJAG00000010135Patl110094.764Jaculus_jaculus
ENSDORG00000000237Patl16261.667ENSKMAG00000020848patl18256.944Kryptolebias_marmoratus
ENSDORG00000000237Patl16234.792ENSLBEG00000022344patl25833.958Labrus_bergylta
ENSDORG00000000237Patl19270.000ENSLBEG00000023617patl18159.259Labrus_bergylta
ENSDORG00000000237Patl19856.697ENSLACG00000004640PATL19956.420Latimeria_chalumnae
ENSDORG00000000237Patl19946.788ENSLOCG00000000717patl19947.400Lepisosteus_oculatus
ENSDORG00000000237Patl15138.363ENSLAFG00000031124PATL27137.596Loxodonta_africana
ENSDORG00000000237Patl110095.590ENSLAFG00000015161PATL110095.590Loxodonta_africana
ENSDORG00000000237Patl110096.364ENSMFAG00000040851PATL110096.364Macaca_fascicularis
ENSDORG00000000237Patl110096.364ENSMMUG00000017287PATL110096.364Macaca_mulatta
ENSDORG00000000237Patl110096.364ENSMNEG00000038692PATL110096.364Macaca_nemestrina
ENSDORG00000000237Patl110096.234ENSMLEG00000030044PATL110096.234Mandrillus_leucophaeus
ENSDORG00000000237Patl17777.419ENSMAMG00000003950patl19846.087Mastacembelus_armatus
ENSDORG00000000237Patl16033.684ENSMAMG00000013327patl26134.834Mastacembelus_armatus
ENSDORG00000000237Patl16268.333ENSMZEG00005013404patl18449.464Maylandia_zebra
ENSDORG00000000237Patl18731.416ENSMZEG00005014292patl25435.952Maylandia_zebra
ENSDORG00000000237Patl19277.235ENSMGAG00000003406PATL19976.364Meleagris_gallopavo
ENSDORG00000000237Patl18594.864ENSMAUG00000012059Patl19695.062Mesocricetus_auratus
ENSDORG00000000237Patl19992.568ENSMICG00000004172PATL19897.627Microcebus_murinus
ENSDORG00000000237Patl110095.584ENSMOCG00000010087Patl110095.584Microtus_ochrogaster
ENSDORG00000000237Patl15236.070ENSMOCG00000015367Patl27235.411Microtus_ochrogaster
ENSDORG00000000237Patl19945.490ENSMMOG00000013711patl110045.052Mola_mola
ENSDORG00000000237Patl16230.818ENSMMOG00000001299patl26031.579Mola_mola
ENSDORG00000000237Patl110088.472ENSMODG00000020201PATL110087.824Monodelphis_domestica
ENSDORG00000000237Patl16236.105ENSMODG00000017690PATL27136.620Monodelphis_domestica
ENSDORG00000000237Patl19438.619ENSMALG00000018706patl19754.424Monopterus_albus
ENSDORG00000000237Patl15434.368ENSMALG00000008131patl25234.368Monopterus_albus
ENSDORG00000000237Patl110094.805MGP_CAROLIEiJ_G0022739Patl110094.805Mus_caroli
ENSDORG00000000237Patl110094.935ENSMUSG00000046139Patl110094.935Mus_musculus
ENSDORG00000000237Patl110094.675MGP_PahariEiJ_G0014233Patl110094.675Mus_pahari
ENSDORG00000000237Patl110095.065MGP_SPRETEiJ_G0023652Patl110095.065Mus_spretus
ENSDORG00000000237Patl110095.590ENSMPUG00000014607PATL110094.682Mustela_putorius_furo
ENSDORG00000000237Patl110092.607ENSMLUG00000011169PATL110092.866Myotis_lucifugus
ENSDORG00000000237Patl110095.736ENSNGAG00000003682Patl110095.736Nannospalax_galili
ENSDORG00000000237Patl16233.884ENSNBRG00000011745patl26433.471Neolamprologus_brichardi
ENSDORG00000000237Patl15844.000ENSNBRG00000015372patl17544.000Neolamprologus_brichardi
ENSDORG00000000237Patl19993.455ENSNLEG00000013081PATL110092.932Nomascus_leucogenys
ENSDORG00000000237Patl16335.583ENSNLEG00000005673PATL27536.259Nomascus_leucogenys
ENSDORG00000000237Patl16491.613ENSMEUG00000009391PATL17591.613Notamacropus_eugenii
ENSDORG00000000237Patl16895.238ENSOPRG00000007963PATL17995.238Ochotona_princeps
ENSDORG00000000237Patl17390.040ENSODEG00000001792PATL19590.592Octodon_degus
ENSDORG00000000237Patl16235.464ENSONIG00000011519patl25436.580Oreochromis_niloticus
ENSDORG00000000237Patl16268.333ENSONIG00000004170patl110047.865Oreochromis_niloticus
ENSDORG00000000237Patl15136.881ENSOANG00000001538-8437.408Ornithorhynchus_anatinus
ENSDORG00000000237Patl15286.398ENSOANG00000011117-9686.735Ornithorhynchus_anatinus
ENSDORG00000000237Patl110096.364ENSOCUG00000002156PATL110096.364Oryctolagus_cuniculus
ENSDORG00000000237Patl16134.316ENSOCUG00000006339PATL27435.000Oryctolagus_cuniculus
ENSDORG00000000237Patl16432.738ENSORLG00000005780patl26332.475Oryzias_latipes
ENSDORG00000000237Patl16433.135ENSORLG00020016506patl26132.871Oryzias_latipes_hni
ENSDORG00000000237Patl16432.937ENSORLG00015014500patl26332.673Oryzias_latipes_hsok
ENSDORG00000000237Patl18731.232ENSOMEG00000021628patl26234.304Oryzias_melastigma
ENSDORG00000000237Patl15434.951ENSOGAG00000004709PATL27234.368Otolemur_garnettii
ENSDORG00000000237Patl110097.143ENSOGAG00000004351PATL110097.143Otolemur_garnettii
ENSDORG00000000237Patl16137.263ENSOARG00000003762PATL27238.235Ovis_aries
ENSDORG00000000237Patl19993.734ENSOARG00000012005PATL19693.734Ovis_aries
ENSDORG00000000237Patl110096.364ENSPPAG00000034275PATL110096.364Pan_paniscus
ENSDORG00000000237Patl16335.438ENSPPAG00000007221PATL27336.259Pan_paniscus
ENSDORG00000000237Patl19995.294ENSPPRG00000020639PATL110095.294Panthera_pardus
ENSDORG00000000237Patl16433.943ENSPPRG00000004279PATL27335.749Panthera_pardus
ENSDORG00000000237Patl110095.325ENSPTIG00000019298PATL110095.325Panthera_tigris_altaica
ENSDORG00000000237Patl16433.740ENSPTIG00000018964PATL27335.507Panthera_tigris_altaica
ENSDORG00000000237Patl16335.102ENSPTRG00000041536PATL27336.028Pan_troglodytes
ENSDORG00000000237Patl19987.958ENSPTRG00000003697PATL110087.958Pan_troglodytes
ENSDORG00000000237Patl110096.364ENSPANG00000035620PATL110096.364Papio_anubis
ENSDORG00000000237Patl19945.276ENSPKIG00000016224patl19946.503Paramormyrops_kingsleyae
ENSDORG00000000237Patl15436.993ENSPSIG00000017690PATL29536.634Pelodiscus_sinensis
ENSDORG00000000237Patl110082.924ENSPSIG00000016206PATL19682.406Pelodiscus_sinensis
ENSDORG00000000237Patl15935.294ENSPMGG00000014550patl26335.613Periophthalmus_magnuspinnatus
ENSDORG00000000237Patl18953.237ENSPMGG00000002644patl19944.903Periophthalmus_magnuspinnatus
ENSDORG00000000237Patl16234.836ENSPEMG00000016509Patl27036.573Peromyscus_maniculatus_bairdii
ENSDORG00000000237Patl110095.584ENSPEMG00000014215Patl110095.584Peromyscus_maniculatus_bairdii
ENSDORG00000000237Patl15735.635ENSPCIG00000018256PATL27636.881Phascolarctos_cinereus
ENSDORG00000000237Patl110088.860ENSPCIG00000010852PATL110088.212Phascolarctos_cinereus
ENSDORG00000000237Patl110045.988ENSPFOG00000007768patl110046.347Poecilia_formosa
ENSDORG00000000237Patl19831.026ENSPFOG00000007305patl25436.145Poecilia_formosa
ENSDORG00000000237Patl15552.732ENSPLAG00000018465patl17649.621Poecilia_latipinna
ENSDORG00000000237Patl19831.282ENSPLAG00000020713patl25436.386Poecilia_latipinna
ENSDORG00000000237Patl19831.498ENSPMEG00000018942patl25436.386Poecilia_mexicana
ENSDORG00000000237Patl18549.014ENSPMEG00000006555patl17649.469Poecilia_mexicana
ENSDORG00000000237Patl17447.120ENSPREG00000003874patl17049.477Poecilia_reticulata
ENSDORG00000000237Patl110096.753ENSPPYG00000003230PATL110096.753Pongo_abelii
ENSDORG00000000237Patl110096.364ENSPCOG00000020770PATL110096.364Propithecus_coquereli
ENSDORG00000000237Patl15336.957ENSPCOG00000000295PATL29938.187Propithecus_coquereli
ENSDORG00000000237Patl18590.091ENSPVAG00000015239PATL110089.787Pteropus_vampyrus
ENSDORG00000000237Patl16233.884ENSPNYG00000017381patl26135.322Pundamilia_nyererei
ENSDORG00000000237Patl17851.964ENSPNYG00000018936patl19651.952Pundamilia_nyererei
ENSDORG00000000237Patl19943.818ENSPNAG00000017907patl19944.898Pygocentrus_nattereri
ENSDORG00000000237Patl16334.406ENSPNAG00000002315patl26335.073Pygocentrus_nattereri
ENSDORG00000000237Patl110095.195ENSRNOG00000021052Patl110095.195Rattus_norvegicus
ENSDORG00000000237Patl110085.963ENSRBIG00000032263PATL110085.963Rhinopithecus_bieti
ENSDORG00000000237Patl110096.494ENSRROG00000032861PATL110096.494Rhinopithecus_roxellana
ENSDORG00000000237Patl110096.494ENSSBOG00000025195PATL110096.494Saimiri_boliviensis_boliviensis
ENSDORG00000000237Patl110088.889ENSSHAG00000004309PATL110088.243Sarcophilus_harrisii
ENSDORG00000000237Patl18633.530ENSSFOG00015000720patl25537.500Scleropages_formosus
ENSDORG00000000237Patl19943.499ENSSFOG00015009614patl19945.269Scleropages_formosus
ENSDORG00000000237Patl16633.981ENSSMAG00000017262patl27433.004Scophthalmus_maximus
ENSDORG00000000237Patl19455.556ENSSMAG00000009482patl18155.556Scophthalmus_maximus
ENSDORG00000000237Patl18731.416ENSSDUG00000022927patl26034.369Seriola_dumerili
ENSDORG00000000237Patl19270.000ENSSDUG00000005362patl17961.111Seriola_dumerili
ENSDORG00000000237Patl16833.708ENSSLDG00000017922patl25936.298Seriola_lalandi_dorsalis
ENSDORG00000000237Patl19268.333ENSSLDG00000019146patl17959.722Seriola_lalandi_dorsalis
ENSDORG00000000237Patl15135.878ENSSARG00000009047PATL27635.115Sorex_araneus
ENSDORG00000000237Patl18098.810ENSSARG00000009600PATL18098.810Sorex_araneus
ENSDORG00000000237Patl110081.453ENSSPUG00000009453PATL110080.674Sphenodon_punctatus
ENSDORG00000000237Patl15934.249ENSSPAG00000004784patl26234.507Stegastes_partitus
ENSDORG00000000237Patl15451.799ENSSPAG00000003187patl19845.916Stegastes_partitus
ENSDORG00000000237Patl110095.720ENSSSCG00000013124PATL110095.720Sus_scrofa
ENSDORG00000000237Patl15236.725ENSTGUG00000004619-9837.376Taeniopygia_guttata
ENSDORG00000000237Patl19979.091ENSTGUG00000006222PATL110078.023Taeniopygia_guttata
ENSDORG00000000237Patl19451.899ENSTRUG00000000709patl19944.363Takifugu_rubripes
ENSDORG00000000237Patl16233.820ENSTRUG00000005647patl26233.680Takifugu_rubripes
ENSDORG00000000237Patl19094.872ENSTBEG00000000796PATL19094.872Tupaia_belangeri
ENSDORG00000000237Patl17295.513ENSTTRG00000009389PATL18495.513Tursiops_truncatus
ENSDORG00000000237Patl16234.560ENSUAMG00000018533PATL27135.507Ursus_americanus
ENSDORG00000000237Patl19995.263ENSUMAG00000018634PATL110094.397Ursus_maritimus
ENSDORG00000000237Patl16235.174ENSUMAG00000007738PATL27135.749Ursus_maritimus
ENSDORG00000000237Patl16595.833ENSVPAG00000009224PATL17695.833Vicugna_pacos
ENSDORG00000000237Patl16435.529ENSVVUG00000011576PATL27236.473Vulpes_vulpes
ENSDORG00000000237Patl19995.567ENSVVUG00000016668PATL110094.540Vulpes_vulpes
ENSDORG00000000237Patl17533.333ENSXETG00000014167patl27535.223Xenopus_tropicalis
ENSDORG00000000237Patl17963.158ENSXCOG00000010808patl19863.158Xiphophorus_couchianus
ENSDORG00000000237Patl16266.667ENSXMAG00000013834patl18457.534Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us