EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000000336 (Gene tree)
Gene ID: 105988387
Gene Symbol: Snd1
Alias: -
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 446430 bases
Position: chrKN672394.1:1330788-1777217
Accession: 105988387
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000000314	TUDOR	PF00567.24	4.5e-28	1	1
ENSDORP00000016058	TUDOR	PF00567.24	4.6e-28	1	1
ENSDORP00000016058	SNase	PF00565.17	1.2e-69	1	5
ENSDORP00000016058	SNase	PF00565.17	1.2e-69	2	5
ENSDORP00000016058	SNase	PF00565.17	1.2e-69	3	5
ENSDORP00000016058	SNase	PF00565.17	1.2e-69	4	5
ENSDORP00000016058	SNase	PF00565.17	1.2e-69	5	5
ENSDORP00000000314	SNase	PF00565.17	5.8e-68	1	5
ENSDORP00000000314	SNase	PF00565.17	5.8e-68	2	5
ENSDORP00000000314	SNase	PF00565.17	5.8e-68	3	5
ENSDORP00000000314	SNase	PF00565.17	5.8e-68	4	5
ENSDORP00000000314	SNase	PF00565.17	5.8e-68	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000000336	-	2709	-	ENSDORP00000000314	902 (aa)	-	UPI000BAD0793
ENSDORT00000024073	-	3503	XM_013020007	ENSDORP00000016058	910 (aa)	XP_012875461	A0A1S3FG39

Gene Model

Click here to download ENSDORG00000000336's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000000336's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000000336	Snd1	100	98.571	ENSG00000197157	SND1	100	98.571	Homo_sapiens
ENSDORG00000000336	Snd1	100	83.662	ENSAPOG00000017599	snd1	99	84.538	Acanthochromis_polyacanthus
ENSDORG00000000336	Snd1	100	98.246	ENSAMEG00000004664	SND1	94	98.246	Ailuropoda_melanoleuca
ENSDORG00000000336	Snd1	98	81.971	ENSACIG00000003551	snd1	99	81.849	Amphilophus_citrinellus
ENSDORG00000000336	Snd1	100	83.443	ENSAOCG00000014166	snd1	99	84.316	Amphiprion_ocellaris
ENSDORG00000000336	Snd1	100	83.443	ENSAPEG00000007067	snd1	99	84.316	Amphiprion_percula
ENSDORG00000000336	Snd1	98	82.793	ENSATEG00000018475	snd1	88	84.036	Anabas_testudineus
ENSDORG00000000336	Snd1	100	98.791	ENSANAG00000034463	SND1	100	98.791	Aotus_nancymaae
ENSDORG00000000336	Snd1	99	82.967	ENSACLG00000022897	snd1	99	83.964	Astatotilapia_calliptera
ENSDORG00000000336	Snd1	99	84.048	ENSAMXG00000016318	snd1	98	84.633	Astyanax_mexicanus
ENSDORG00000000336	Snd1	100	98.571	ENSBTAG00000010692	SND1	100	98.571	Bos_taurus
ENSDORG00000000336	Snd1	98	46.872	WBGene00006626	tsn-1	98	47.311	Caenorhabditis_elegans
ENSDORG00000000336	Snd1	100	98.571	ENSCJAG00000017668	SND1	100	98.571	Callithrix_jacchus
ENSDORG00000000336	Snd1	100	98.681	ENSCAFG00000001700	SND1	100	98.681	Canis_familiaris
ENSDORG00000000336	Snd1	100	98.681	ENSCAFG00020021639	SND1	100	98.681	Canis_lupus_dingo
ENSDORG00000000336	Snd1	100	98.901	ENSCHIG00000023390	SND1	100	98.901	Capra_hircus
ENSDORG00000000336	Snd1	73	98.944	ENSTSYG00000004979	SND1	96	98.944	Carlito_syrichta
ENSDORG00000000336	Snd1	99	84.889	ENSCAPG00000010677	SND1	98	84.933	Cavia_aperea
ENSDORG00000000336	Snd1	100	98.352	ENSCPOG00000006251	SND1	100	98.352	Cavia_porcellus
ENSDORG00000000336	Snd1	100	98.901	ENSCCAG00000036847	SND1	100	98.901	Cebus_capucinus
ENSDORG00000000336	Snd1	100	98.791	ENSCATG00000035214	SND1	100	98.791	Cercocebus_atys
ENSDORG00000000336	Snd1	100	98.681	ENSCLAG00000011796	SND1	100	98.681	Chinchilla_lanigera
ENSDORG00000000336	Snd1	100	98.791	ENSCSAG00000010182	SND1	100	98.791	Chlorocebus_sabaeus
ENSDORG00000000336	Snd1	77	90.196	ENSCHOG00000002218	SND1	86	90.196	Choloepus_hoffmanni
ENSDORG00000000336	Snd1	100	91.648	ENSCPBG00000018094	SND1	98	92.601	Chrysemys_picta_bellii
ENSDORG00000000336	Snd1	98	57.143	ENSCING00000000524	-	98	57.143	Ciona_intestinalis
ENSDORG00000000336	Snd1	99	58.306	ENSCSAVG00000008807	-	99	58.453	Ciona_savignyi
ENSDORG00000000336	Snd1	100	98.791	ENSCANG00000035119	SND1	100	98.791	Colobus_angolensis_palliatus
ENSDORG00000000336	Snd1	100	97.802	ENSCGRG00001022514	Snd1	100	97.802	Cricetulus_griseus_chok1gshd
ENSDORG00000000336	Snd1	97	97.851	ENSCGRG00000012277	Snd1	99	97.851	Cricetulus_griseus_crigri
ENSDORG00000000336	Snd1	98	84.004	ENSCSEG00000008661	snd1	98	84.004	Cynoglossus_semilaevis
ENSDORG00000000336	Snd1	100	83.882	ENSCVAG00000010316	snd1	100	83.563	Cyprinodon_variegatus
ENSDORG00000000336	Snd1	100	84.009	ENSDARG00000006766	snd1	97	87.050	Danio_rerio
ENSDORG00000000336	Snd1	97	95.603	ENSDNOG00000006795	SND1	100	95.603	Dasypus_novemcinctus
ENSDORG00000000336	Snd1	98	50.703	FBgn0035121	Tudor-SN	98	50.703	Drosophila_melanogaster
ENSDORG00000000336	Snd1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSDORG00000000336	Snd1	60	66.142	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSDORG00000000336	Snd1	100	97.084	ENSEASG00005008513	SND1	100	97.084	Equus_asinus_asinus
ENSDORG00000000336	Snd1	100	98.681	ENSECAG00000011451	SND1	100	98.681	Equus_caballus
ENSDORG00000000336	Snd1	100	87.033	ENSEEUG00000014737	SND1	100	87.033	Erinaceus_europaeus
ENSDORG00000000336	Snd1	99	82.018	ENSELUG00000001805	snd1	95	82.943	Esox_lucius
ENSDORG00000000336	Snd1	100	98.681	ENSFCAG00000008289	SND1	100	98.681	Felis_catus
ENSDORG00000000336	Snd1	100	98.681	ENSFDAG00000015881	SND1	100	98.681	Fukomys_damarensis
ENSDORG00000000336	Snd1	99	81.985	ENSFHEG00000004093	snd1	97	84.517	Fundulus_heteroclitus
ENSDORG00000000336	Snd1	64	74.011	ENSGMOG00000018932	snd1	55	83.721	Gadus_morhua
ENSDORG00000000336	Snd1	100	84.101	ENSGAFG00000008421	snd1	99	85.006	Gambusia_affinis
ENSDORG00000000336	Snd1	100	53.746	ENSGACG00000019793	snd1	98	54.204	Gasterosteus_aculeatus
ENSDORG00000000336	Snd1	100	98.791	ENSGGOG00000009614	SND1	100	98.791	Gorilla_gorilla
ENSDORG00000000336	Snd1	99	83.480	ENSHBUG00000019135	snd1	99	83.964	Haplochromis_burtoni
ENSDORG00000000336	Snd1	100	98.352	ENSHGLG00000003618	SND1	100	98.352	Heterocephalus_glaber_female
ENSDORG00000000336	Snd1	99	97.901	ENSHGLG00100012449	SND1	100	97.901	Heterocephalus_glaber_male
ENSDORG00000000336	Snd1	100	82.566	ENSHCOG00000005266	snd1	98	83.781	Hippocampus_comes
ENSDORG00000000336	Snd1	100	82.495	ENSIPUG00000013279	snd1	98	83.519	Ictalurus_punctatus
ENSDORG00000000336	Snd1	100	99.341	ENSSTOG00000002140	SND1	100	99.341	Ictidomys_tridecemlineatus
ENSDORG00000000336	Snd1	100	98.791	ENSJJAG00000009561	Snd1	100	98.791	Jaculus_jaculus
ENSDORG00000000336	Snd1	100	83.553	ENSKMAG00000016997	snd1	98	84.564	Kryptolebias_marmoratus
ENSDORG00000000336	Snd1	100	84.732	ENSLBEG00000013563	snd1	99	83.204	Labrus_bergylta
ENSDORG00000000336	Snd1	99	85.006	ENSLOCG00000015537	snd1	98	85.006	Lepisosteus_oculatus
ENSDORG00000000336	Snd1	100	97.692	ENSLAFG00000009696	SND1	100	97.692	Loxodonta_africana
ENSDORG00000000336	Snd1	100	98.791	ENSMFAG00000038114	SND1	100	98.791	Macaca_fascicularis
ENSDORG00000000336	Snd1	100	98.791	ENSMMUG00000015432	SND1	100	98.791	Macaca_mulatta
ENSDORG00000000336	Snd1	100	98.791	ENSMNEG00000039808	SND1	100	98.791	Macaca_nemestrina
ENSDORG00000000336	Snd1	100	98.681	ENSMLEG00000029040	SND1	100	98.681	Mandrillus_leucophaeus
ENSDORG00000000336	Snd1	99	83.682	ENSMAMG00000011739	snd1	98	84.375	Mastacembelus_armatus
ENSDORG00000000336	Snd1	99	82.967	ENSMZEG00005005681	snd1	99	83.964	Maylandia_zebra
ENSDORG00000000336	Snd1	100	98.901	ENSMICG00000000097	SND1	100	98.901	Microcebus_murinus
ENSDORG00000000336	Snd1	100	98.462	ENSMOCG00000005040	Snd1	100	98.462	Microtus_ochrogaster
ENSDORG00000000336	Snd1	100	83.224	ENSMMOG00000001795	snd1	99	84.093	Mola_mola
ENSDORG00000000336	Snd1	99	95.429	ENSMODG00000015182	SND1	99	95.429	Monodelphis_domestica
ENSDORG00000000336	Snd1	100	83.114	ENSMALG00000012071	snd1	98	83.929	Monopterus_albus
ENSDORG00000000336	Snd1	100	98.462	MGP_CAROLIEiJ_G0028159	Snd1	100	98.462	Mus_caroli
ENSDORG00000000336	Snd1	100	98.462	ENSMUSG00000001424	Snd1	100	98.462	Mus_musculus
ENSDORG00000000336	Snd1	100	98.352	MGP_PahariEiJ_G0021917	Snd1	100	98.352	Mus_pahari
ENSDORG00000000336	Snd1	100	98.462	MGP_SPRETEiJ_G0029159	Snd1	100	98.462	Mus_spretus
ENSDORG00000000336	Snd1	100	98.352	ENSMPUG00000006545	SND1	100	98.352	Mustela_putorius_furo
ENSDORG00000000336	Snd1	97	97.207	ENSMLUG00000017130	SND1	99	97.207	Myotis_lucifugus
ENSDORG00000000336	Snd1	100	98.462	ENSNGAG00000011186	Snd1	100	98.462	Nannospalax_galili
ENSDORG00000000336	Snd1	99	82.857	ENSNBRG00000006681	snd1	99	83.853	Neolamprologus_brichardi
ENSDORG00000000336	Snd1	100	98.681	ENSNLEG00000012263	SND1	100	98.757	Nomascus_leucogenys
ENSDORG00000000336	Snd1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSDORG00000000336	Snd1	100	98.571	ENSODEG00000011502	SND1	100	98.571	Octodon_degus
ENSDORG00000000336	Snd1	99	82.857	ENSONIG00000011481	snd1	96	83.853	Oreochromis_niloticus
ENSDORG00000000336	Snd1	98	94.257	ENSOANG00000000817	SND1	99	93.645	Ornithorhynchus_anatinus
ENSDORG00000000336	Snd1	100	97.473	ENSOCUG00000001620	SND1	100	97.473	Oryctolagus_cuniculus
ENSDORG00000000336	Snd1	98	83.799	ENSORLG00000015201	snd1	98	83.799	Oryzias_latipes
ENSDORG00000000336	Snd1	98	83.911	ENSORLG00020013991	snd1	98	83.911	Oryzias_latipes_hni
ENSDORG00000000336	Snd1	98	83.911	ENSORLG00015012436	snd1	98	83.911	Oryzias_latipes_hsok
ENSDORG00000000336	Snd1	100	83.004	ENSOMEG00000006406	snd1	98	84.228	Oryzias_melastigma
ENSDORG00000000336	Snd1	100	98.246	ENSOGAG00000013356	SND1	94	98.246	Otolemur_garnettii
ENSDORG00000000336	Snd1	97	96.158	ENSOARG00000002149	SND1	100	96.158	Ovis_aries
ENSDORG00000000336	Snd1	100	98.681	ENSPPAG00000042947	SND1	100	98.681	Pan_paniscus
ENSDORG00000000336	Snd1	100	98.681	ENSPPRG00000004494	SND1	100	98.681	Panthera_pardus
ENSDORG00000000336	Snd1	100	98.571	ENSPTIG00000014214	SND1	100	98.571	Panthera_tigris_altaica
ENSDORG00000000336	Snd1	100	98.681	ENSPTRG00000023911	SND1	100	98.681	Pan_troglodytes
ENSDORG00000000336	Snd1	97	98.756	ENSPANG00000011997	SND1	99	98.756	Papio_anubis
ENSDORG00000000336	Snd1	99	81.257	ENSPKIG00000023494	snd1	98	81.576	Paramormyrops_kingsleyae
ENSDORG00000000336	Snd1	92	82.874	ENSPMGG00000003629	snd1	100	82.874	Periophthalmus_magnuspinnatus
ENSDORG00000000336	Snd1	100	98.571	ENSPEMG00000010240	Snd1	100	98.571	Peromyscus_maniculatus_bairdii
ENSDORG00000000336	Snd1	97	73.220	ENSPMAG00000007915	-	99	73.220	Petromyzon_marinus
ENSDORG00000000336	Snd1	99	95.875	ENSPCIG00000011561	SND1	99	95.875	Phascolarctos_cinereus
ENSDORG00000000336	Snd1	100	83.553	ENSPFOG00000001557	snd1	99	84.427	Poecilia_formosa
ENSDORG00000000336	Snd1	100	83.553	ENSPLAG00000018459	snd1	96	84.427	Poecilia_latipinna
ENSDORG00000000336	Snd1	100	83.991	ENSPMEG00000006803	snd1	99	84.872	Poecilia_mexicana
ENSDORG00000000336	Snd1	100	83.882	ENSPREG00000002189	snd1	99	84.761	Poecilia_reticulata
ENSDORG00000000336	Snd1	93	98.635	ENSPPYG00000017972	SND1	100	98.635	Pongo_abelii
ENSDORG00000000336	Snd1	100	86.044	ENSPCAG00000011305	SND1	99	85.953	Procavia_capensis
ENSDORG00000000336	Snd1	100	98.571	ENSPCOG00000026791	SND1	100	98.571	Propithecus_coquereli
ENSDORG00000000336	Snd1	100	96.813	ENSPVAG00000013945	SND1	100	96.813	Pteropus_vampyrus
ENSDORG00000000336	Snd1	99	82.967	ENSPNYG00000000932	snd1	99	83.964	Pundamilia_nyererei
ENSDORG00000000336	Snd1	100	83.370	ENSPNAG00000001206	snd1	98	84.333	Pygocentrus_nattereri
ENSDORG00000000336	Snd1	99	97.797	ENSRNOG00000031173	Snd1	99	97.797	Rattus_norvegicus
ENSDORG00000000336	Snd1	73	99.060	ENSRBIG00000027782	-	93	99.240	Rhinopithecus_bieti
ENSDORG00000000336	Snd1	100	98.791	ENSRROG00000033020	SND1	100	98.791	Rhinopithecus_roxellana
ENSDORG00000000336	Snd1	100	98.791	ENSSBOG00000032461	SND1	100	98.791	Saimiri_boliviensis_boliviensis
ENSDORG00000000336	Snd1	98	92.568	ENSSHAG00000015359	SND1	100	92.568	Sarcophilus_harrisii
ENSDORG00000000336	Snd1	100	82.046	ENSSFOG00015001103	snd1	98	83.130	Scleropages_formosus
ENSDORG00000000336	Snd1	98	83.557	ENSSMAG00000001932	snd1	93	83.296	Scophthalmus_maximus
ENSDORG00000000336	Snd1	100	83.443	ENSSDUG00000002699	snd1	92	84.316	Seriola_dumerili
ENSDORG00000000336	Snd1	100	76.542	ENSSLDG00000001950	snd1	98	77.318	Seriola_lalandi_dorsalis
ENSDORG00000000336	Snd1	86	98.113	ENSSARG00000004877	SND1	92	98.113	Sorex_araneus
ENSDORG00000000336	Snd1	73	87.304	ENSSPUG00000017586	SND1	96	87.304	Sphenodon_punctatus
ENSDORG00000000336	Snd1	76	84.433	ENSSPAG00000021398	snd1	96	86.562	Stegastes_partitus
ENSDORG00000000336	Snd1	100	98.352	ENSSSCG00000016590	SND1	100	98.352	Sus_scrofa
ENSDORG00000000336	Snd1	99	82.819	ENSTRUG00000014067	snd1	98	83.333	Takifugu_rubripes
ENSDORG00000000336	Snd1	100	83.004	ENSTNIG00000011019	snd1	95	87.047	Tetraodon_nigroviridis
ENSDORG00000000336	Snd1	93	93.278	ENSTBEG00000003999	SND1	100	93.278	Tupaia_belangeri
ENSDORG00000000336	Snd1	100	94.176	ENSTTRG00000006059	SND1	100	94.176	Tursiops_truncatus
ENSDORG00000000336	Snd1	71	89.870	ENSUAMG00000002820	-	86	89.785	Ursus_americanus
ENSDORG00000000336	Snd1	91	98.479	ENSUAMG00000005604	-	93	98.479	Ursus_americanus
ENSDORG00000000336	Snd1	100	98.462	ENSUMAG00000005960	SND1	100	98.462	Ursus_maritimus
ENSDORG00000000336	Snd1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSDORG00000000336	Snd1	100	98.462	ENSVVUG00000007226	SND1	100	98.462	Vulpes_vulpes
ENSDORG00000000336	Snd1	97	84.407	ENSXETG00000023043	snd1	100	84.325	Xenopus_tropicalis
ENSDORG00000000336	Snd1	92	81.354	ENSXCOG00000013629	snd1	99	81.354	Xiphophorus_couchianus
ENSDORG00000000336	Snd1	100	84.101	ENSXMAG00000011469	snd1	99	84.983	Xiphophorus_maculatus