EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000000740 (Gene tree)
Gene ID: 105990898
Gene Symbol: Ptcd1
Alias: 1110069M14Rik
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 10245 bases
Position: chrKN672414.1:6658838-6669082
Accession: 105990898
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000000691	PPR	PF01535.20	6.3e-18	1	3
ENSDORP00000000691	PPR	PF01535.20	6.3e-18	2	3
ENSDORP00000000691	PPR	PF01535.20	6.3e-18	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000023576	-	2392	-	ENSDORP00000019004	20 (aa)	-	UPI000BAD244E
ENSDORT00000000740	-	2070	XM_013023413	ENSDORP00000000691	690 (aa)	XP_012878867	UPI000BAD2097

Gene Model

Click here to download ENSDORG00000000740's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000000740's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000000740	Ptcd1	99	73.381	ENSG00000248919	ATP5MF-PTCD1	92	73.381	Homo_sapiens
ENSDORG00000000740	Ptcd1	99	73.381	ENSG00000106246	PTCD1	99	73.381	Homo_sapiens
ENSDORG00000000740	Ptcd1	82	46.783	ENSAPOG00000010679	ptcd1	87	46.783	Acanthochromis_polyacanthus
ENSDORG00000000740	Ptcd1	99	76.734	ENSAMEG00000006224	-	91	76.301	Ailuropoda_melanoleuca
ENSDORG00000000740	Ptcd1	90	49.038	ENSACIG00000017861	ptcd1	87	49.038	Amphilophus_citrinellus
ENSDORG00000000740	Ptcd1	83	46.897	ENSAOCG00000022617	ptcd1	81	47.865	Amphiprion_ocellaris
ENSDORG00000000740	Ptcd1	88	47.705	ENSAOCG00000020741	-	81	48.649	Amphiprion_ocellaris
ENSDORG00000000740	Ptcd1	88	47.541	ENSAPEG00000022632	ptcd1	81	48.480	Amphiprion_percula
ENSDORG00000000740	Ptcd1	91	47.634	ENSATEG00000007016	ptcd1	85	47.619	Anabas_testudineus
ENSDORG00000000740	Ptcd1	88	59.032	ENSAPLG00000006862	-	93	59.473	Anas_platyrhynchos
ENSDORG00000000740	Ptcd1	89	60.835	ENSACAG00000012871	-	80	61.401	Anolis_carolinensis
ENSDORG00000000740	Ptcd1	99	74.090	ENSANAG00000035790	-	100	74.090	Aotus_nancymaae
ENSDORG00000000740	Ptcd1	86	49.000	ENSACLG00000002824	ptcd1	80	49.239	Astatotilapia_calliptera
ENSDORG00000000740	Ptcd1	95	45.652	ENSAMXG00000037292	ptcd1	96	45.797	Astyanax_mexicanus
ENSDORG00000000740	Ptcd1	99	74.352	ENSBTAG00000020440	-	86	74.459	Bos_taurus
ENSDORG00000000740	Ptcd1	99	75.000	ENSCJAG00000015815	-	98	75.145	Callithrix_jacchus
ENSDORG00000000740	Ptcd1	99	75.434	ENSCAFG00000015055	-	92	75.000	Canis_familiaris
ENSDORG00000000740	Ptcd1	99	75.434	ENSCAFG00020014480	-	91	75.000	Canis_lupus_dingo
ENSDORG00000000740	Ptcd1	99	74.311	ENSCHIG00000027000	-	97	74.311	Capra_hircus
ENSDORG00000000740	Ptcd1	100	75.641	ENSTSYG00000029495	-	99	75.783	Carlito_syrichta
ENSDORG00000000740	Ptcd1	94	76.805	ENSCAPG00000014660	-	98	76.805	Cavia_aperea
ENSDORG00000000740	Ptcd1	100	76.143	ENSCPOG00000001780	-	99	76.143	Cavia_porcellus
ENSDORG00000000740	Ptcd1	99	74.026	ENSCCAG00000034025	-	99	74.170	Cebus_capucinus
ENSDORG00000000740	Ptcd1	99	73.957	ENSCATG00000040859	-	98	74.101	Cercocebus_atys
ENSDORG00000000740	Ptcd1	99	77.424	ENSCLAG00000006354	-	99	77.188	Chinchilla_lanigera
ENSDORG00000000740	Ptcd1	92	73.994	ENSCSAG00000017794	-	95	74.303	Chlorocebus_sabaeus
ENSDORG00000000740	Ptcd1	99	56.233	ENSCPBG00000020866	-	99	55.556	Chrysemys_picta_bellii
ENSDORG00000000740	Ptcd1	84	30.808	ENSCING00000007717	-	91	31.985	Ciona_intestinalis
ENSDORG00000000740	Ptcd1	99	73.737	ENSCANG00000023441	-	98	73.882	Colobus_angolensis_palliatus
ENSDORG00000000740	Ptcd1	100	74.678	ENSCGRG00001023686	Ptcd1	99	74.392	Cricetulus_griseus_chok1gshd
ENSDORG00000000740	Ptcd1	99	74.253	ENSCGRG00000015031	Ptcd1	99	73.969	Cricetulus_griseus_crigri
ENSDORG00000000740	Ptcd1	86	46.477	ENSCSEG00000002378	ptcd1	80	46.859	Cynoglossus_semilaevis
ENSDORG00000000740	Ptcd1	87	47.308	ENSCVAG00000015826	ptcd1	83	47.213	Cyprinodon_variegatus
ENSDORG00000000740	Ptcd1	87	47.300	ENSCVAG00000003621	ptcd1	88	47.204	Cyprinodon_variegatus
ENSDORG00000000740	Ptcd1	87	49.755	ENSDARG00000076176	ptcd1	86	49.751	Danio_rerio
ENSDORG00000000740	Ptcd1	99	73.143	ENSDNOG00000009957	-	99	73.429	Dasypus_novemcinctus
ENSDORG00000000740	Ptcd1	91	41.246	ENSEBUG00000014515	ptcd1	96	42.382	Eptatretus_burgeri
ENSDORG00000000740	Ptcd1	99	77.762	ENSEASG00005002480	-	98	77.762	Equus_asinus_asinus
ENSDORG00000000740	Ptcd1	99	78.049	ENSECAG00000016617	-	98	78.049	Equus_caballus
ENSDORG00000000740	Ptcd1	92	44.277	ENSELUG00000016517	ptcd1	82	46.278	Esox_lucius
ENSDORG00000000740	Ptcd1	99	76.445	ENSFCAG00000015069	-	98	76.445	Felis_catus
ENSDORG00000000740	Ptcd1	93	57.312	ENSFALG00000013803	-	85	60.577	Ficedula_albicollis
ENSDORG00000000740	Ptcd1	100	74.749	ENSFDAG00000006393	-	99	74.605	Fukomys_damarensis
ENSDORG00000000740	Ptcd1	76	47.180	ENSFHEG00000012491	ptcd1	88	47.180	Fundulus_heteroclitus
ENSDORG00000000740	Ptcd1	84	47.521	ENSGMOG00000007639	ptcd1	91	47.432	Gadus_morhua
ENSDORG00000000740	Ptcd1	88	58.962	ENSGALG00000004711	-	86	58.962	Gallus_gallus
ENSDORG00000000740	Ptcd1	85	46.269	ENSGAFG00000013175	ptcd1	82	45.833	Gambusia_affinis
ENSDORG00000000740	Ptcd1	87	47.240	ENSGACG00000016607	ptcd1	91	47.798	Gasterosteus_aculeatus
ENSDORG00000000740	Ptcd1	93	55.704	ENSGAGG00000021832	-	100	55.556	Gopherus_agassizii
ENSDORG00000000740	Ptcd1	99	73.669	ENSGGOG00000015123	-	99	73.707	Gorilla_gorilla
ENSDORG00000000740	Ptcd1	86	48.933	ENSHBUG00000018275	ptcd1	80	49.167	Haplochromis_burtoni
ENSDORG00000000740	Ptcd1	100	74.785	ENSHGLG00000017621	-	99	74.499	Heterocephalus_glaber_female
ENSDORG00000000740	Ptcd1	100	74.785	ENSHGLG00100007218	-	99	74.499	Heterocephalus_glaber_male
ENSDORG00000000740	Ptcd1	85	46.870	ENSHCOG00000010784	ptcd1	82	47.019	Hippocampus_comes
ENSDORG00000000740	Ptcd1	99	76.513	ENSSTOG00000001682	-	98	76.513	Ictidomys_tridecemlineatus
ENSDORG00000000740	Ptcd1	100	74.674	ENSJJAG00000000319	Ptcd1	99	74.530	Jaculus_jaculus
ENSDORG00000000740	Ptcd1	87	47.030	ENSKMAG00000008708	ptcd1	82	47.395	Kryptolebias_marmoratus
ENSDORG00000000740	Ptcd1	94	45.037	ENSLBEG00000008061	ptcd1	84	47.444	Labrus_bergylta
ENSDORG00000000740	Ptcd1	89	58.307	ENSLACG00000011172	ptcd1	84	58.882	Latimeria_chalumnae
ENSDORG00000000740	Ptcd1	96	50.994	ENSLOCG00000004833	ptcd1	97	52.389	Lepisosteus_oculatus
ENSDORG00000000740	Ptcd1	99	68.867	ENSLAFG00000002588	-	98	69.584	Loxodonta_africana
ENSDORG00000000740	Ptcd1	99	73.669	ENSMFAG00000041324	-	98	73.813	Macaca_fascicularis
ENSDORG00000000740	Ptcd1	99	73.669	ENSMMUG00000030408	-	98	73.813	Macaca_mulatta
ENSDORG00000000740	Ptcd1	99	73.669	ENSMNEG00000043786	-	98	73.813	Macaca_nemestrina
ENSDORG00000000740	Ptcd1	99	55.827	ENSMLEG00000031179	-	98	57.986	Mandrillus_leucophaeus
ENSDORG00000000740	Ptcd1	95	46.445	ENSMAMG00000007623	ptcd1	91	45.685	Mastacembelus_armatus
ENSDORG00000000740	Ptcd1	86	49.000	ENSMZEG00005012722	ptcd1	80	49.239	Maylandia_zebra
ENSDORG00000000740	Ptcd1	99	55.602	ENSMGAG00000004211	-	92	55.602	Meleagris_gallopavo
ENSDORG00000000740	Ptcd1	99	75.325	ENSMICG00000017428	-	98	75.325	Microcebus_murinus
ENSDORG00000000740	Ptcd1	88	46.314	ENSMMOG00000020243	ptcd1	88	46.912	Mola_mola
ENSDORG00000000740	Ptcd1	99	56.988	ENSMODG00000001350	-	99	56.716	Monodelphis_domestica
ENSDORG00000000740	Ptcd1	96	46.757	ENSMALG00000018442	ptcd1	80	49.576	Monopterus_albus
ENSDORG00000000740	Ptcd1	100	75.252	MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.108	Mus_caroli
ENSDORG00000000740	Ptcd1	100	74.820	ENSMUSG00000029624	Ptcd1	99	74.676	Mus_musculus
ENSDORG00000000740	Ptcd1	100	75.540	MGP_PahariEiJ_G0024580	Ptcd1	99	75.396	Mus_pahari
ENSDORG00000000740	Ptcd1	100	74.964	MGP_SPRETEiJ_G0029012	Ptcd1	99	74.964	Mus_spretus
ENSDORG00000000740	Ptcd1	99	76.190	ENSMPUG00000016518	-	98	76.335	Mustela_putorius_furo
ENSDORG00000000740	Ptcd1	99	78.192	ENSMLUG00000010994	-	92	78.192	Myotis_lucifugus
ENSDORG00000000740	Ptcd1	88	48.377	ENSNBRG00000010079	ptcd1	85	48.435	Neolamprologus_brichardi
ENSDORG00000000740	Ptcd1	78	77.222	ENSNLEG00000011060	-	91	77.222	Nomascus_leucogenys
ENSDORG00000000740	Ptcd1	99	59.972	ENSMEUG00000006930	-	99	59.829	Notamacropus_eugenii
ENSDORG00000000740	Ptcd1	89	73.798	ENSOPRG00000013647	-	88	73.798	Ochotona_princeps
ENSDORG00000000740	Ptcd1	85	47.804	ENSONIG00000003168	ptcd1	95	47.716	Oreochromis_niloticus
ENSDORG00000000740	Ptcd1	82	57.391	ENSOANG00000007728	-	84	53.636	Ornithorhynchus_anatinus
ENSDORG00000000740	Ptcd1	99	72.150	ENSOCUG00000010584	-	96	71.861	Oryctolagus_cuniculus
ENSDORG00000000740	Ptcd1	94	46.037	ENSORLG00000009275	ptcd1	86	47.712	Oryzias_latipes
ENSDORG00000000740	Ptcd1	94	45.646	ENSORLG00020000988	ptcd1	91	45.646	Oryzias_latipes_hni
ENSDORG00000000740	Ptcd1	94	45.427	ENSORLG00015010557	ptcd1	91	45.427	Oryzias_latipes_hsok
ENSDORG00000000740	Ptcd1	87	48.179	ENSOMEG00000020627	ptcd1	86	48.167	Oryzias_melastigma
ENSDORG00000000740	Ptcd1	99	73.121	ENSOGAG00000010877	-	99	73.121	Otolemur_garnettii
ENSDORG00000000740	Ptcd1	99	69.741	ENSOARG00000018676	-	98	69.741	Ovis_aries
ENSDORG00000000740	Ptcd1	99	73.237	ENSPPAG00000036024	-	99	73.237	Pan_paniscus
ENSDORG00000000740	Ptcd1	99	76.890	ENSPPRG00000003478	-	98	76.890	Panthera_pardus
ENSDORG00000000740	Ptcd1	99	72.950	ENSPTRG00000019452	-	99	72.950	Pan_troglodytes
ENSDORG00000000740	Ptcd1	99	73.813	ENSPANG00000016730	-	98	73.957	Papio_anubis
ENSDORG00000000740	Ptcd1	97	49.046	ENSPKIG00000014215	ptcd1	96	49.043	Paramormyrops_kingsleyae
ENSDORG00000000740	Ptcd1	86	58.512	ENSPSIG00000011184	-	99	58.717	Pelodiscus_sinensis
ENSDORG00000000740	Ptcd1	74	41.874	ENSPMAG00000009667	ptcd1	100	41.874	Petromyzon_marinus
ENSDORG00000000740	Ptcd1	89	64.706	ENSPCIG00000024778	-	98	58.436	Phascolarctos_cinereus
ENSDORG00000000740	Ptcd1	86	45.663	ENSPFOG00000004458	ptcd1	82	45.439	Poecilia_formosa
ENSDORG00000000740	Ptcd1	86	47.049	ENSPLAG00000011051	ptcd1	82	46.610	Poecilia_latipinna
ENSDORG00000000740	Ptcd1	86	45.827	ENSPMEG00000020547	ptcd1	82	45.605	Poecilia_mexicana
ENSDORG00000000740	Ptcd1	84	46.077	ENSPREG00000000059	ptcd1	83	45.605	Poecilia_reticulata
ENSDORG00000000740	Ptcd1	94	74.885	ENSPPYG00000017377	-	98	74.732	Pongo_abelii
ENSDORG00000000740	Ptcd1	81	72.143	ENSPCAG00000001852	-	86	72.143	Procavia_capensis
ENSDORG00000000740	Ptcd1	99	75.942	ENSPCOG00000018596	-	98	75.942	Propithecus_coquereli
ENSDORG00000000740	Ptcd1	67	80.000	ENSPVAG00000007529	-	72	80.000	Pteropus_vampyrus
ENSDORG00000000740	Ptcd1	86	48.833	ENSPNYG00000019993	ptcd1	80	49.069	Pundamilia_nyererei
ENSDORG00000000740	Ptcd1	96	47.202	ENSPNAG00000014931	ptcd1	98	46.915	Pygocentrus_nattereri
ENSDORG00000000740	Ptcd1	100	76.411	ENSRNOG00000000987	Ptcd1	99	76.266	Rattus_norvegicus
ENSDORG00000000740	Ptcd1	99	74.170	ENSRBIG00000043393	-	98	74.315	Rhinopithecus_bieti
ENSDORG00000000740	Ptcd1	99	74.026	ENSRROG00000036420	-	98	74.170	Rhinopithecus_roxellana
ENSDORG00000000740	Ptcd1	99	75.289	ENSSBOG00000024114	-	99	74.855	Saimiri_boliviensis_boliviensis
ENSDORG00000000740	Ptcd1	99	55.646	ENSSHAG00000011376	-	99	55.374	Sarcophilus_harrisii
ENSDORG00000000740	Ptcd1	89	52.765	ENSSFOG00015007909	ptcd1	84	52.997	Scleropages_formosus
ENSDORG00000000740	Ptcd1	89	46.042	ENSSMAG00000000218	ptcd1	94	46.179	Scophthalmus_maximus
ENSDORG00000000740	Ptcd1	96	45.643	ENSSDUG00000015671	ptcd1	96	45.643	Seriola_dumerili
ENSDORG00000000740	Ptcd1	96	45.347	ENSSLDG00000014261	ptcd1	95	44.756	Seriola_lalandi_dorsalis
ENSDORG00000000740	Ptcd1	92	57.164	ENSSPUG00000003540	-	83	59.709	Sphenodon_punctatus
ENSDORG00000000740	Ptcd1	89	47.327	ENSSPAG00000011049	ptcd1	83	48.019	Stegastes_partitus
ENSDORG00000000740	Ptcd1	92	78.076	ENSSSCG00000007622	-	97	77.090	Sus_scrofa
ENSDORG00000000740	Ptcd1	88	59.446	ENSTGUG00000007563	-	98	59.967	Taeniopygia_guttata
ENSDORG00000000740	Ptcd1	85	46.622	ENSTRUG00000013471	ptcd1	79	46.859	Takifugu_rubripes
ENSDORG00000000740	Ptcd1	91	45.283	ENSTNIG00000008271	ptcd1	88	45.039	Tetraodon_nigroviridis
ENSDORG00000000740	Ptcd1	99	74.601	ENSTBEG00000011021	-	98	74.601	Tupaia_belangeri
ENSDORG00000000740	Ptcd1	99	73.149	ENSTTRG00000003006	-	98	73.149	Tursiops_truncatus
ENSDORG00000000740	Ptcd1	99	77.168	ENSUAMG00000008049	-	98	76.734	Ursus_americanus
ENSDORG00000000740	Ptcd1	99	75.907	ENSVVUG00000008836	-	98	75.472	Vulpes_vulpes
ENSDORG00000000740	Ptcd1	96	51.786	ENSXETG00000009891	ptcd1	95	51.488	Xenopus_tropicalis
ENSDORG00000000740	Ptcd1	85	46.780	ENSXMAG00000015540	ptcd1	82	46.769	Xiphophorus_maculatus