EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000000742 (Gene tree)
Gene ID: 105990849
Gene Symbol: Cpsf4
Alias: 30kDa
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 7900 bases
Position: chrKN672414.1:6674044-6681943
Accession: 105990849
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000000692	zf-CCCH	PF00642.24	1.7e-19	1	2
ENSDORP00000000692	zf-CCCH	PF00642.24	1.7e-19	2	2
ENSDORP00000000692	zf-CCHC	PF00098.23	2.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000000741	-	1727	XM_013023366	ENSDORP00000000692	217 (aa)	XP_012878820	UPI000BAD09AA

Gene Model

Click here to download ENSDORG00000000742's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000000742's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000000742	Cpsf4	100	98.618	ENSG00000160917	CPSF4	100	99.107	Homo_sapiens
ENSDORG00000000742	Cpsf4	83	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSDORG00000000742	Cpsf4	100	99.539	ENSAMEG00000006252	CPSF4	81	99.539	Ailuropoda_melanoleuca
ENSDORG00000000742	Cpsf4	100	76.959	ENSACIG00000009248	cpsf4	78	74.654	Amphilophus_citrinellus
ENSDORG00000000742	Cpsf4	100	84.862	ENSAOCG00000019616	cpsf4	80	84.862	Amphiprion_ocellaris
ENSDORG00000000742	Cpsf4	100	84.862	ENSAPEG00000011679	cpsf4	80	84.862	Amphiprion_percula
ENSDORG00000000742	Cpsf4	100	83.636	ENSATEG00000007010	cpsf4	81	83.636	Anabas_testudineus
ENSDORG00000000742	Cpsf4	100	94.009	ENSACAG00000012941	CPSF4	72	94.009	Anolis_carolinensis
ENSDORG00000000742	Cpsf4	100	98.618	ENSANAG00000021360	CPSF4	81	98.618	Aotus_nancymaae
ENSDORG00000000742	Cpsf4	100	83.028	ENSACLG00000010374	cpsf4	80	83.028	Astatotilapia_calliptera
ENSDORG00000000742	Cpsf4	100	84.018	ENSAMXG00000031647	cpsf4	81	84.932	Astyanax_mexicanus
ENSDORG00000000742	Cpsf4	100	86.636	ENSBTAG00000002090	CPSF4	79	86.636	Bos_taurus
ENSDORG00000000742	Cpsf4	100	98.618	ENSCJAG00000015826	CPSF4	81	98.618	Callithrix_jacchus
ENSDORG00000000742	Cpsf4	100	99.078	ENSCAFG00000015036	CPSF4	81	99.078	Canis_familiaris
ENSDORG00000000742	Cpsf4	100	99.078	ENSCAFG00020014462	CPSF4	83	99.078	Canis_lupus_dingo
ENSDORG00000000742	Cpsf4	100	98.618	ENSCHIG00000014313	CPSF4	81	98.618	Capra_hircus
ENSDORG00000000742	Cpsf4	100	87.558	ENSTSYG00000005712	-	79	87.558	Carlito_syrichta
ENSDORG00000000742	Cpsf4	100	81.651	ENSTSYG00000008195	-	85	77.982	Carlito_syrichta
ENSDORG00000000742	Cpsf4	100	80.275	ENSTSYG00000014604	-	79	76.606	Carlito_syrichta
ENSDORG00000000742	Cpsf4	100	99.539	ENSCAPG00000013881	CPSF4	86	99.539	Cavia_aperea
ENSDORG00000000742	Cpsf4	100	88.018	ENSCPOG00000001783	CPSF4	79	88.018	Cavia_porcellus
ENSDORG00000000742	Cpsf4	100	98.618	ENSCCAG00000028291	CPSF4	81	98.618	Cebus_capucinus
ENSDORG00000000742	Cpsf4	100	98.618	ENSCATG00000038440	CPSF4	81	98.618	Cercocebus_atys
ENSDORG00000000742	Cpsf4	100	99.078	ENSCLAG00000007050	CPSF4	81	99.078	Chinchilla_lanigera
ENSDORG00000000742	Cpsf4	100	98.618	ENSCSAG00000017795	CPSF4	81	98.618	Chlorocebus_sabaeus
ENSDORG00000000742	Cpsf4	99	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSDORG00000000742	Cpsf4	52	88.393	ENSCPBG00000010269	-	68	87.611	Chrysemys_picta_bellii
ENSDORG00000000742	Cpsf4	95	54.106	ENSCING00000021080	-	76	54.106	Ciona_intestinalis
ENSDORG00000000742	Cpsf4	94	50.655	ENSCSAVG00000011469	-	78	50.220	Ciona_savignyi
ENSDORG00000000742	Cpsf4	100	98.618	ENSCANG00000019384	CPSF4	81	98.618	Colobus_angolensis_palliatus
ENSDORG00000000742	Cpsf4	100	88.018	ENSCGRG00001024184	Cpsf4	79	88.018	Cricetulus_griseus_chok1gshd
ENSDORG00000000742	Cpsf4	100	99.539	ENSCGRG00000013892	Cpsf4	81	99.539	Cricetulus_griseus_crigri
ENSDORG00000000742	Cpsf4	100	83.945	ENSCSEG00000019055	cpsf4	80	83.945	Cynoglossus_semilaevis
ENSDORG00000000742	Cpsf4	100	83.028	ENSCVAG00000016528	cpsf4	80	83.028	Cyprinodon_variegatus
ENSDORG00000000742	Cpsf4	100	84.018	ENSDARG00000020217	cpsf4	81	84.018	Danio_rerio
ENSDORG00000000742	Cpsf4	100	99.078	ENSDNOG00000006344	CPSF4	81	99.078	Dasypus_novemcinctus
ENSDORG00000000742	Cpsf4	99	56.780	FBgn0015621	Clp	80	55.932	Drosophila_melanogaster
ENSDORG00000000742	Cpsf4	62	100.000	ENSETEG00000002608	CPSF4	50	100.000	Echinops_telfairi
ENSDORG00000000742	Cpsf4	99	65.116	ENSEBUG00000012552	cpsf4	77	65.116	Eptatretus_burgeri
ENSDORG00000000742	Cpsf4	100	88.018	ENSEASG00005002487	CPSF4	79	88.018	Equus_asinus_asinus
ENSDORG00000000742	Cpsf4	100	99.539	ENSECAG00000007525	CPSF4	81	99.539	Equus_caballus
ENSDORG00000000742	Cpsf4	71	100.000	ENSEEUG00000002158	CPSF4	65	100.000	Erinaceus_europaeus
ENSDORG00000000742	Cpsf4	100	81.532	ENSELUG00000011481	cpsf4	81	78.829	Esox_lucius
ENSDORG00000000742	Cpsf4	100	99.539	ENSFCAG00000015070	CPSF4	81	99.539	Felis_catus
ENSDORG00000000742	Cpsf4	100	83.871	ENSFALG00000013799	CPSF4	79	82.028	Ficedula_albicollis
ENSDORG00000000742	Cpsf4	100	99.539	ENSFDAG00000014092	CPSF4	89	99.539	Fukomys_damarensis
ENSDORG00000000742	Cpsf4	100	82.569	ENSFHEG00000010880	cpsf4	80	82.569	Fundulus_heteroclitus
ENSDORG00000000742	Cpsf4	100	76.037	ENSGMOG00000002330	cpsf4	79	74.194	Gadus_morhua
ENSDORG00000000742	Cpsf4	84	38.421	ENSGALG00000004441	-	92	36.842	Gallus_gallus
ENSDORG00000000742	Cpsf4	100	83.410	ENSGALG00000004714	CPSF4	79	82.028	Gallus_gallus
ENSDORG00000000742	Cpsf4	100	83.028	ENSGAFG00000010580	cpsf4	80	83.028	Gambusia_affinis
ENSDORG00000000742	Cpsf4	100	77.419	ENSGACG00000007792	cpsf4	79	76.037	Gasterosteus_aculeatus
ENSDORG00000000742	Cpsf4	59	81.395	ENSGAGG00000020579	-	63	88.393	Gopherus_agassizii
ENSDORG00000000742	Cpsf4	100	95.392	ENSGAGG00000021835	CPSF4	81	95.392	Gopherus_agassizii
ENSDORG00000000742	Cpsf4	100	98.618	ENSGGOG00000015131	CPSF4	81	98.618	Gorilla_gorilla
ENSDORG00000000742	Cpsf4	100	83.028	ENSHBUG00000013699	cpsf4	80	83.028	Haplochromis_burtoni
ENSDORG00000000742	Cpsf4	100	97.260	ENSHGLG00000017150	CPSF4	81	97.260	Heterocephalus_glaber_female
ENSDORG00000000742	Cpsf4	72	52.564	ENSHGLG00100017302	-	69	43.981	Heterocephalus_glaber_male
ENSDORG00000000742	Cpsf4	100	96.347	ENSHGLG00100009215	-	94	96.347	Heterocephalus_glaber_male
ENSDORG00000000742	Cpsf4	100	79.817	ENSHCOG00000004397	cpsf4	80	76.606	Hippocampus_comes
ENSDORG00000000742	Cpsf4	100	83.105	ENSIPUG00000017147	cpsf4	81	84.545	Ictalurus_punctatus
ENSDORG00000000742	Cpsf4	100	99.539	ENSSTOG00000001688	CPSF4	81	99.539	Ictidomys_tridecemlineatus
ENSDORG00000000742	Cpsf4	100	99.078	ENSJJAG00000019426	Cpsf4	81	99.078	Jaculus_jaculus
ENSDORG00000000742	Cpsf4	100	82.569	ENSKMAG00000015642	cpsf4	80	82.569	Kryptolebias_marmoratus
ENSDORG00000000742	Cpsf4	99	59.908	ENSLACG00000018470	-	78	59.908	Latimeria_chalumnae
ENSDORG00000000742	Cpsf4	100	88.073	ENSLACG00000010938	CPSF4	81	88.073	Latimeria_chalumnae
ENSDORG00000000742	Cpsf4	100	88.479	ENSLOCG00000004814	cpsf4	81	88.479	Lepisosteus_oculatus
ENSDORG00000000742	Cpsf4	100	99.078	ENSLAFG00000000159	CPSF4	81	99.078	Loxodonta_africana
ENSDORG00000000742	Cpsf4	100	98.618	ENSMFAG00000001462	CPSF4	100	87.037	Macaca_fascicularis
ENSDORG00000000742	Cpsf4	100	98.618	ENSMMUG00000019191	CPSF4	81	98.618	Macaca_mulatta
ENSDORG00000000742	Cpsf4	100	98.618	ENSMNEG00000032306	CPSF4	81	98.618	Macaca_nemestrina
ENSDORG00000000742	Cpsf4	100	98.618	ENSMLEG00000034721	CPSF4	81	98.618	Mandrillus_leucophaeus
ENSDORG00000000742	Cpsf4	100	83.028	ENSMAMG00000006244	cpsf4	80	82.353	Mastacembelus_armatus
ENSDORG00000000742	Cpsf4	100	83.028	ENSMZEG00005007515	cpsf4	80	83.028	Maylandia_zebra
ENSDORG00000000742	Cpsf4	100	83.410	ENSMGAG00000004235	CPSF4	91	82.028	Meleagris_gallopavo
ENSDORG00000000742	Cpsf4	100	99.539	ENSMAUG00000021253	Cpsf4	81	99.539	Mesocricetus_auratus
ENSDORG00000000742	Cpsf4	100	98.618	ENSMICG00000017429	CPSF4	81	98.618	Microcebus_murinus
ENSDORG00000000742	Cpsf4	100	99.539	ENSMOCG00000014901	Cpsf4	81	99.539	Microtus_ochrogaster
ENSDORG00000000742	Cpsf4	100	83.486	ENSMMOG00000001813	cpsf4	67	97.345	Mola_mola
ENSDORG00000000742	Cpsf4	100	96.313	ENSMODG00000001367	CPSF4	81	96.313	Monodelphis_domestica
ENSDORG00000000742	Cpsf4	100	81.651	ENSMALG00000012611	cpsf4	85	81.651	Monopterus_albus
ENSDORG00000000742	Cpsf4	100	99.539	MGP_CAROLIEiJ_G0028012	Cpsf4	81	99.539	Mus_caroli
ENSDORG00000000742	Cpsf4	100	99.539	ENSMUSG00000029625	Cpsf4	81	99.539	Mus_musculus
ENSDORG00000000742	Cpsf4	100	99.539	MGP_PahariEiJ_G0024581	Cpsf4	81	99.539	Mus_pahari
ENSDORG00000000742	Cpsf4	100	99.078	MGP_SPRETEiJ_G0029013	Cpsf4	81	99.078	Mus_spretus
ENSDORG00000000742	Cpsf4	100	99.539	ENSMPUG00000016508	CPSF4	81	99.539	Mustela_putorius_furo
ENSDORG00000000742	Cpsf4	100	87.097	ENSMLUG00000010980	CPSF4	91	87.097	Myotis_lucifugus
ENSDORG00000000742	Cpsf4	100	99.078	ENSNGAG00000001567	Cpsf4	81	99.078	Nannospalax_galili
ENSDORG00000000742	Cpsf4	100	83.028	ENSNBRG00000003943	cpsf4	86	83.028	Neolamprologus_brichardi
ENSDORG00000000742	Cpsf4	100	94.931	ENSNLEG00000011074	CPSF4	80	94.931	Nomascus_leucogenys
ENSDORG00000000742	Cpsf4	100	96.313	ENSMEUG00000006955	CPSF4	81	96.313	Notamacropus_eugenii
ENSDORG00000000742	Cpsf4	100	99.078	ENSOPRG00000013663	CPSF4	81	99.078	Ochotona_princeps
ENSDORG00000000742	Cpsf4	100	99.539	ENSODEG00000011181	-	81	99.539	Octodon_degus
ENSDORG00000000742	Cpsf4	98	79.343	ENSODEG00000018283	-	75	76.526	Octodon_degus
ENSDORG00000000742	Cpsf4	100	73.733	ENSODEG00000009779	-	77	73.733	Octodon_degus
ENSDORG00000000742	Cpsf4	100	83.028	ENSONIG00000008495	cpsf4	80	83.028	Oreochromis_niloticus
ENSDORG00000000742	Cpsf4	100	55.556	ENSOANG00000009568	-	83	53.333	Ornithorhynchus_anatinus
ENSDORG00000000742	Cpsf4	100	94.931	ENSOANG00000007729	CPSF4	92	94.931	Ornithorhynchus_anatinus
ENSDORG00000000742	Cpsf4	100	98.618	ENSOCUG00000002437	CPSF4	57	98.618	Oryctolagus_cuniculus
ENSDORG00000000742	Cpsf4	100	82.488	ENSORLG00000022798	cpsf4	80	82.488	Oryzias_latipes
ENSDORG00000000742	Cpsf4	100	82.488	ENSORLG00020008548	cpsf4	80	82.488	Oryzias_latipes_hni
ENSDORG00000000742	Cpsf4	100	82.488	ENSORLG00015019575	cpsf4	80	82.488	Oryzias_latipes_hsok
ENSDORG00000000742	Cpsf4	100	81.106	ENSOMEG00000005176	cpsf4	80	81.106	Oryzias_melastigma
ENSDORG00000000742	Cpsf4	100	99.078	ENSOGAG00000010884	CPSF4	81	99.078	Otolemur_garnettii
ENSDORG00000000742	Cpsf4	98	87.037	ENSOARG00000018668	CPSF4	79	86.111	Ovis_aries
ENSDORG00000000742	Cpsf4	100	98.157	ENSPPAG00000043355	CPSF4	81	98.157	Pan_paniscus
ENSDORG00000000742	Cpsf4	100	99.539	ENSPPRG00000003134	CPSF4	81	99.539	Panthera_pardus
ENSDORG00000000742	Cpsf4	100	99.078	ENSPTIG00000005604	CPSF4	81	99.078	Panthera_tigris_altaica
ENSDORG00000000742	Cpsf4	100	98.157	ENSPTRG00000019453	CPSF4	81	98.157	Pan_troglodytes
ENSDORG00000000742	Cpsf4	100	98.618	ENSPANG00000023123	CPSF4	81	98.618	Papio_anubis
ENSDORG00000000742	Cpsf4	100	82.432	ENSPKIG00000014278	cpsf4	81	82.432	Paramormyrops_kingsleyae
ENSDORG00000000742	Cpsf4	99	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSDORG00000000742	Cpsf4	99	58.986	ENSPSIG00000018198	-	99	57.870	Pelodiscus_sinensis
ENSDORG00000000742	Cpsf4	100	75.576	ENSPMGG00000017735	cpsf4	81	74.194	Periophthalmus_magnuspinnatus
ENSDORG00000000742	Cpsf4	100	99.539	ENSPEMG00000004508	Cpsf4	81	99.539	Peromyscus_maniculatus_bairdii
ENSDORG00000000742	Cpsf4	100	96.313	ENSPCIG00000024776	CPSF4	81	96.313	Phascolarctos_cinereus
ENSDORG00000000742	Cpsf4	100	83.028	ENSPFOG00000014912	cpsf4	80	83.028	Poecilia_formosa
ENSDORG00000000742	Cpsf4	100	73.733	ENSPLAG00000009599	cpsf4	79	73.733	Poecilia_latipinna
ENSDORG00000000742	Cpsf4	100	83.028	ENSPMEG00000009790	cpsf4	80	83.028	Poecilia_mexicana
ENSDORG00000000742	Cpsf4	100	81.651	ENSPREG00000018166	cpsf4	80	78.440	Poecilia_reticulata
ENSDORG00000000742	Cpsf4	100	97.696	ENSPPYG00000017378	CPSF4	93	97.696	Pongo_abelii
ENSDORG00000000742	Cpsf4	100	99.078	ENSPCAG00000001892	CPSF4	81	99.078	Procavia_capensis
ENSDORG00000000742	Cpsf4	100	99.078	ENSPCOG00000012771	CPSF4	84	99.078	Propithecus_coquereli
ENSDORG00000000742	Cpsf4	100	99.539	ENSPVAG00000007531	CPSF4	81	99.539	Pteropus_vampyrus
ENSDORG00000000742	Cpsf4	100	83.028	ENSPNYG00000018559	cpsf4	80	83.028	Pundamilia_nyererei
ENSDORG00000000742	Cpsf4	100	84.475	ENSPNAG00000003736	cpsf4	81	85.388	Pygocentrus_nattereri
ENSDORG00000000742	Cpsf4	100	87.558	ENSRNOG00000000985	Cpsf4	79	87.558	Rattus_norvegicus
ENSDORG00000000742	Cpsf4	100	98.618	ENSRBIG00000033886	CPSF4	93	98.618	Rhinopithecus_bieti
ENSDORG00000000742	Cpsf4	100	87.097	ENSRROG00000040431	CPSF4	79	87.097	Rhinopithecus_roxellana
ENSDORG00000000742	Cpsf4	100	98.618	ENSSBOG00000020493	CPSF4	100	87.037	Saimiri_boliviensis_boliviensis
ENSDORG00000000742	Cpsf4	100	96.313	ENSSHAG00000011533	CPSF4	81	96.313	Sarcophilus_harrisii
ENSDORG00000000742	Cpsf4	100	83.482	ENSSFOG00015007883	cpsf4	81	84.375	Scleropages_formosus
ENSDORG00000000742	Cpsf4	100	77.419	ENSSMAG00000006374	cpsf4	79	75.576	Scophthalmus_maximus
ENSDORG00000000742	Cpsf4	100	83.028	ENSSDUG00000018887	cpsf4	80	83.028	Seriola_dumerili
ENSDORG00000000742	Cpsf4	100	83.028	ENSSLDG00000019078	cpsf4	80	83.028	Seriola_lalandi_dorsalis
ENSDORG00000000742	Cpsf4	100	99.078	ENSSARG00000012416	CPSF4	93	99.078	Sorex_araneus
ENSDORG00000000742	Cpsf4	100	94.009	ENSSPUG00000003549	CPSF4	81	94.009	Sphenodon_punctatus
ENSDORG00000000742	Cpsf4	94	56.098	ENSSPUG00000014803	-	73	57.073	Sphenodon_punctatus
ENSDORG00000000742	Cpsf4	100	78.341	ENSSPAG00000006174	cpsf4	78	74.654	Stegastes_partitus
ENSDORG00000000742	Cpsf4	100	87.558	ENSSSCG00000026896	CPSF4	79	87.558	Sus_scrofa
ENSDORG00000000742	Cpsf4	99	83.796	ENSTGUG00000007552	CPSF4	78	81.944	Taeniopygia_guttata
ENSDORG00000000742	Cpsf4	100	79.638	ENSTRUG00000024220	cpsf4	80	79.638	Takifugu_rubripes
ENSDORG00000000742	Cpsf4	100	78.440	ENSTNIG00000006265	cpsf4	80	80.275	Tetraodon_nigroviridis
ENSDORG00000000742	Cpsf4	100	88.479	ENSTBEG00000011406	CPSF4	93	88.479	Tupaia_belangeri
ENSDORG00000000742	Cpsf4	100	72.811	ENSTTRG00000003007	CPSF4	81	72.811	Tursiops_truncatus
ENSDORG00000000742	Cpsf4	90	86.154	ENSUAMG00000008051	CPSF4	65	86.154	Ursus_americanus
ENSDORG00000000742	Cpsf4	100	87.558	ENSUMAG00000009474	CPSF4	79	87.558	Ursus_maritimus
ENSDORG00000000742	Cpsf4	100	87.558	ENSVVUG00000008824	CPSF4	79	87.558	Vulpes_vulpes
ENSDORG00000000742	Cpsf4	100	87.665	ENSXETG00000009892	cpsf4	81	87.665	Xenopus_tropicalis
ENSDORG00000000742	Cpsf4	98	61.215	ENSXETG00000004641	cpsf4l	79	60.849	Xenopus_tropicalis
ENSDORG00000000742	Cpsf4	100	83.028	ENSXCOG00000016040	cpsf4	80	83.028	Xiphophorus_couchianus
ENSDORG00000000742	Cpsf4	100	83.028	ENSXMAG00000024670	cpsf4	80	83.028	Xiphophorus_maculatus