EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSDORG00000001067 (Gene tree)
Gene ID
105981577
Gene Symbol
Pabpc1l
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1 like
Gene Type
protein_coding
Species
Dipodomys_ordii
Status
putative
Strand
Plus strand
Length
21351 bases
Position
chrKN672359.1:23243952-23265302
Accession
105981577
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDORP00000001003PABPPF00658.185.2e-2711
ENSDORP00000001003RRM_5PF13893.63e-1412
ENSDORP00000001003RRM_5PF13893.63e-1422
ENSDORP00000001003RRM_1PF00076.229.2e-9214
ENSDORP00000001003RRM_1PF00076.229.2e-9224
ENSDORP00000001003RRM_1PF00076.229.2e-9234
ENSDORP00000001003RRM_1PF00076.229.2e-9244
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDORT00000001068-2378XM_013010787ENSDORP00000001003613 (aa)XP_012866241A0A1S3EPD0
Gene Model
Click here to download ENSDORG00000001067's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000001067's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDORG00000001067Pabpc1l5436.047ENSDORG00000006455Celf26836.047
ENSDORG00000001067Pabpc1l6338.710ENSDORG00000008549Rbm197238.710
ENSDORG00000001067Pabpc1l6134.940ENSDORG00000010437Elavl28834.940
ENSDORG00000001067Pabpc1l5432.000ENSDORG00000013721Celf18432.000
ENSDORG00000001067Pabpc1l6132.632ENSDORG00000009158Elavl19832.632
ENSDORG00000001067Pabpc1l5932.222ENSDORG00000008601Tia18132.222
ENSDORG00000001067Pabpc1l6133.735ENSDORG00000012729Elavl48833.735
ENSDORG00000001067Pabpc1l10067.195ENSDORG00000013935Pabpc19967.195
ENSDORG00000001067Pabpc1l5630.323ENSDORG00000027821-5730.323
ENSDORG00000001067Pabpc1l6336.126ENSDORG00000016366Sf3b45436.126
ENSDORG00000001067Pabpc1l5941.250ENSDORG00000004926-6341.250
ENSDORG00000001067Pabpc1l6132.530ENSDORG00000002538Elavl39132.530
ENSDORG00000001067Pabpc1l9963.550ENSDORG00000011581Pabpc49863.067
ENSDORG00000001067Pabpc1l6068.528ENSDORG00000011362-9968.528
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDORG00000001067Pabpc1l9985.948ENSG00000101104PABPC1L9989.815Homo_sapiens
ENSDORG00000001067Pabpc1l9964.583ENSAPOG00000010842pabpc1l9964.744Acanthochromis_polyacanthus
ENSDORG00000001067Pabpc1l9975.274ENSAMEG00000004099PABPC1L10075.549Ailuropoda_melanoleuca
ENSDORG00000001067Pabpc1l9868.998ENSACIG00000021004-9968.998Amphilophus_citrinellus
ENSDORG00000001067Pabpc1l9964.603ENSAOCG00000006167-9964.603Amphiprion_ocellaris
ENSDORG00000001067Pabpc1l9966.019ENSAPEG00000010558-9778.218Amphiprion_percula
ENSDORG00000001067Pabpc1l9966.505ENSATEG00000007428pabpc1l9966.505Anabas_testudineus
ENSDORG00000001067Pabpc1l9871.753ENSAPLG00000008415PABPC1L9871.845Anas_platyrhynchos
ENSDORG00000001067Pabpc1l9971.429ENSACAG00000011841PABPC1L9871.429Anolis_carolinensis
ENSDORG00000001067Pabpc1l9984.477ENSANAG00000026826PABPC1L9984.477Aotus_nancymaae
ENSDORG00000001067Pabpc1l9965.120ENSACLG00000024791pabpc1l9965.120Astatotilapia_calliptera
ENSDORG00000001067Pabpc1l9967.891ENSAMXG00000013552pabpc1l9967.891Astyanax_mexicanus
ENSDORG00000001067Pabpc1l6769.281ENSBTAG00000016849PABPC1L9569.281Bos_taurus
ENSDORG00000001067Pabpc1l6094.643ENSBTAG00000055300-10094.643Bos_taurus
ENSDORG00000001067Pabpc1l6074.138ENSCJAG00000038506-10074.138Callithrix_jacchus
ENSDORG00000001067Pabpc1l9985.294ENSCJAG00000017628PABPC1L9985.294Callithrix_jacchus
ENSDORG00000001067Pabpc1l9972.910ENSCAFG00000009573PABPC1L10072.910Canis_familiaris
ENSDORG00000001067Pabpc1l9985.173ENSCAFG00020013828PABPC1L9985.173Canis_lupus_dingo
ENSDORG00000001067Pabpc1l9783.110ENSCHIG00000025759PABPC1L9183.110Capra_hircus
ENSDORG00000001067Pabpc1l9983.007ENSTSYG00000006645PABPC1L9983.007Carlito_syrichta
ENSDORG00000001067Pabpc1l9979.159ENSCAPG00000014519PABPC1L9979.159Cavia_aperea
ENSDORG00000001067Pabpc1l9983.657ENSCPOG00000013633PABPC1L9983.657Cavia_porcellus
ENSDORG00000001067Pabpc1l10084.528ENSCCAG00000023338PABPC1L10084.528Cebus_capucinus
ENSDORG00000001067Pabpc1l9986.438ENSCATG00000034065PABPC1L9986.438Cercocebus_atys
ENSDORG00000001067Pabpc1l9982.686ENSCLAG00000005298PABPC1L9983.819Chinchilla_lanigera
ENSDORG00000001067Pabpc1l9986.275ENSCSAG00000014242PABPC1L9986.275Chlorocebus_sabaeus
ENSDORG00000001067Pabpc1l5378.788ENSCPBG00000007810-8178.788Chrysemys_picta_bellii
ENSDORG00000001067Pabpc1l7279.412ENSCPBG00000017755-9979.412Chrysemys_picta_bellii
ENSDORG00000001067Pabpc1l9748.571ENSCING00000002796-9748.880Ciona_intestinalis
ENSDORG00000001067Pabpc1l8078.313ENSCSAVG00000004246-8378.313Ciona_savignyi
ENSDORG00000001067Pabpc1l9755.907ENSCSAVG00000003102-10080.822Ciona_savignyi
ENSDORG00000001067Pabpc1l9982.126ENSCANG00000037530PABPC1L9982.126Colobus_angolensis_palliatus
ENSDORG00000001067Pabpc1l10079.160ENSCGRG00001021938Pabpc1l10079.160Cricetulus_griseus_chok1gshd
ENSDORG00000001067Pabpc1l10079.160ENSCGRG00000007946Pabpc1l10079.160Cricetulus_griseus_crigri
ENSDORG00000001067Pabpc1l9962.687ENSCSEG00000021295pabpc1l9962.687Cynoglossus_semilaevis
ENSDORG00000001067Pabpc1l9966.343ENSCVAG00000015943-8683.969Cyprinodon_variegatus
ENSDORG00000001067Pabpc1l9967.200ENSDARG00000002597pabpc1l8884.615Danio_rerio
ENSDORG00000001067Pabpc1l9985.294ENSDNOG00000048450PABPC1L9985.294Dasypus_novemcinctus
ENSDORG00000001067Pabpc1l9588.618ENSETEG00000009969PABPC1L7288.618Echinops_telfairi
ENSDORG00000001067Pabpc1l6093.452ENSEASG00005023408-10093.452Equus_asinus_asinus
ENSDORG00000001067Pabpc1l5285.455ENSEASG00005023407-6785.455Equus_asinus_asinus
ENSDORG00000001067Pabpc1l6782.969ENSECAG00000040139-8182.969Equus_caballus
ENSDORG00000001067Pabpc1l9980.788ENSEEUG00000005978PABPC1L9980.788Erinaceus_europaeus
ENSDORG00000001067Pabpc1l9967.834ENSELUG00000001811pabpc1l9967.834Esox_lucius
ENSDORG00000001067Pabpc1l9985.738ENSFCAG00000011692PABPC1L9985.738Felis_catus
ENSDORG00000001067Pabpc1l8871.795ENSFALG00000005372PABPC1L9071.795Ficedula_albicollis
ENSDORG00000001067Pabpc1l10081.626ENSFDAG00000008291PABPC1L10081.626Fukomys_damarensis
ENSDORG00000001067Pabpc1l9966.452ENSFHEG00000003398pabpc1l9966.452Fundulus_heteroclitus
ENSDORG00000001067Pabpc1l9966.451ENSGMOG00000004437pabpc1l9866.451Gadus_morhua
ENSDORG00000001067Pabpc1l9868.503ENSGALG00000004123PABPC1L9981.055Gallus_gallus
ENSDORG00000001067Pabpc1l9962.558ENSGAFG00000021057pabpc1l9962.558Gambusia_affinis
ENSDORG00000001067Pabpc1l9964.172ENSGACG00000002792pabpc1l9964.172Gasterosteus_aculeatus
ENSDORG00000001067Pabpc1l9973.312ENSGAGG00000000589PABPC1L9081.840Gopherus_agassizii
ENSDORG00000001067Pabpc1l9986.111ENSGGOG00000004584PABPC1L9986.111Gorilla_gorilla
ENSDORG00000001067Pabpc1l9964.960ENSHBUG00000006134pabpc1l9964.960Haplochromis_burtoni
ENSDORG00000001067Pabpc1l9983.495ENSHGLG00000008434PABPC1L9983.495Heterocephalus_glaber_female
ENSDORG00000001067Pabpc1l5979.213ENSHGLG00100019506-10079.213Heterocephalus_glaber_male
ENSDORG00000001067Pabpc1l9983.495ENSHGLG00100012151PABPC1L9983.495Heterocephalus_glaber_male
ENSDORG00000001067Pabpc1l9964.086ENSHCOG00000009270pabpc1l9964.500Hippocampus_comes
ENSDORG00000001067Pabpc1l6060.345ENSIPUG00000006780-8560.345Ictalurus_punctatus
ENSDORG00000001067Pabpc1l6059.770ENSIPUG00000006760-8859.770Ictalurus_punctatus
ENSDORG00000001067Pabpc1l9968.051ENSIPUG00000012602pabpc1l9968.051Ictalurus_punctatus
ENSDORG00000001067Pabpc1l9987.092ENSSTOG00000003739PABPC1L9987.092Ictidomys_tridecemlineatus
ENSDORG00000001067Pabpc1l9970.182ENSJJAG00000022406Pabpc1l9967.208Jaculus_jaculus
ENSDORG00000001067Pabpc1l9966.450ENSKMAG00000016847pabpc1l9966.450Kryptolebias_marmoratus
ENSDORG00000001067Pabpc1l9964.610ENSLBEG00000010084pabpc1l9964.610Labrus_bergylta
ENSDORG00000001067Pabpc1l9967.717ENSLACG00000005762PABPC1L9969.653Latimeria_chalumnae
ENSDORG00000001067Pabpc1l9968.750ENSLOCG00000007519pabpc1l9868.750Lepisosteus_oculatus
ENSDORG00000001067Pabpc1l9981.571ENSLAFG00000003553PABPC1L10081.571Loxodonta_africana
ENSDORG00000001067Pabpc1l9986.275ENSMFAG00000040365PABPC1L9986.275Macaca_fascicularis
ENSDORG00000001067Pabpc1l9983.902ENSMNEG00000032298PABPC1L9983.902Macaca_nemestrina
ENSDORG00000001067Pabpc1l9986.438ENSMLEG00000043139PABPC1L9986.438Mandrillus_leucophaeus
ENSDORG00000001067Pabpc1l9765.189ENSMAMG00000011854pabpc1l9765.189Mastacembelus_armatus
ENSDORG00000001067Pabpc1l9965.120ENSMZEG00005023713pabpc1l9965.120Maylandia_zebra
ENSDORG00000001067Pabpc1l9972.464ENSMGAG00000003674PABPC1L9872.464Meleagris_gallopavo
ENSDORG00000001067Pabpc1l10076.575ENSMOCG00000013186Pabpc1l10076.575Microtus_ochrogaster
ENSDORG00000001067Pabpc1l9966.126ENSMMOG00000020574-9083.077Mola_mola
ENSDORG00000001067Pabpc1l9476.501ENSMODG00000016198PABPC1L9976.500Monodelphis_domestica
ENSDORG00000001067Pabpc1l9764.860ENSMALG00000021622pabpc1l10064.860Monopterus_albus
ENSDORG00000001067Pabpc1l9978.595MGP_CAROLIEiJ_G0024627Pabpc1l9978.595Mus_caroli
ENSDORG00000001067Pabpc1l9978.431ENSMUSG00000054582Pabpc1l9978.431Mus_musculus
ENSDORG00000001067Pabpc1l9978.140MGP_PahariEiJ_G0026071Pabpc1l9978.140Mus_pahari
ENSDORG00000001067Pabpc1l9978.595MGP_SPRETEiJ_G0025549Pabpc1l9978.595Mus_spretus
ENSDORG00000001067Pabpc1l9982.955ENSMPUG00000017646PABPC1L9982.955Mustela_putorius_furo
ENSDORG00000001067Pabpc1l9877.331ENSMLUG00000006324PABPC1L9877.331Myotis_lucifugus
ENSDORG00000001067Pabpc1l10080.614ENSNGAG00000010458Pabpc1l10080.614Nannospalax_galili
ENSDORG00000001067Pabpc1l9870.913ENSNBRG00000016633pabpc1l9970.913Neolamprologus_brichardi
ENSDORG00000001067Pabpc1l8970.803ENSMEUG00000007905-8970.803Notamacropus_eugenii
ENSDORG00000001067Pabpc1l10084.715ENSOPRG00000011846PABPC1L10084.715Ochotona_princeps
ENSDORG00000001067Pabpc1l10075.081ENSODEG00000015482PABPC1L10075.081Octodon_degus
ENSDORG00000001067Pabpc1l5776.471ENSODEG00000002920-9276.471Octodon_degus
ENSDORG00000001067Pabpc1l9965.280ENSONIG00000017314pabpc1l9965.280Oreochromis_niloticus
ENSDORG00000001067Pabpc1l8965.461ENSOANG00000015793-10065.461Ornithorhynchus_anatinus
ENSDORG00000001067Pabpc1l9977.812ENSOCUG00000003005PABPC1L9977.812Oryctolagus_cuniculus
ENSDORG00000001067Pabpc1l9770.913ENSORLG00000010322pabpc1l9970.913Oryzias_latipes
ENSDORG00000001067Pabpc1l9770.913ENSORLG00020021193pabpc1l9970.913Oryzias_latipes_hni
ENSDORG00000001067Pabpc1l9770.913ENSORLG00015017018pabpc1l9970.913Oryzias_latipes_hsok
ENSDORG00000001067Pabpc1l9962.348ENSOMEG00000010789pabpc1l9962.348Oryzias_melastigma
ENSDORG00000001067Pabpc1l9983.253ENSOGAG00000032999PABPC1L9983.253Otolemur_garnettii
ENSDORG00000001067Pabpc1l9982.871ENSOARG00000004578PABPC1L9982.871Ovis_aries
ENSDORG00000001067Pabpc1l9985.784ENSPPAG00000039677PABPC1L9985.784Pan_paniscus
ENSDORG00000001067Pabpc1l6379.012ENSPPRG00000019327-9879.012Panthera_pardus
ENSDORG00000001067Pabpc1l9986.093ENSPTIG00000006524PABPC1L9986.093Panthera_tigris_altaica
ENSDORG00000001067Pabpc1l6389.506ENSPTRG00000013531PABPC1L9989.506Pan_troglodytes
ENSDORG00000001067Pabpc1l9986.438ENSPANG00000018788PABPC1L9986.438Papio_anubis
ENSDORG00000001067Pabpc1l5379.389ENSPKIG00000016810-9379.389Paramormyrops_kingsleyae
ENSDORG00000001067Pabpc1l9968.910ENSPKIG00000007322pabpc1l9968.910Paramormyrops_kingsleyae
ENSDORG00000001067Pabpc1l6880.815ENSPSIG00000013289PABPC1L9980.815Pelodiscus_sinensis
ENSDORG00000001067Pabpc1l6381.818ENSPMGG00000023117pabpc1l9281.818Periophthalmus_magnuspinnatus
ENSDORG00000001067Pabpc1l7264.824ENSPMGG00000023121-9364.824Periophthalmus_magnuspinnatus
ENSDORG00000001067Pabpc1l9978.084ENSPEMG00000020671Pabpc1l9978.084Peromyscus_maniculatus_bairdii
ENSDORG00000001067Pabpc1l10066.186ENSPFOG00000013241pabpc1l9966.186Poecilia_formosa
ENSDORG00000001067Pabpc1l9965.909ENSPLAG00000017490-9965.909Poecilia_latipinna
ENSDORG00000001067Pabpc1l6383.846ENSPLAG00000023686-9283.846Poecilia_latipinna
ENSDORG00000001067Pabpc1l6383.846ENSPMEG00000009185-8883.846Poecilia_mexicana
ENSDORG00000001067Pabpc1l9965.545ENSPMEG00000007677pabpc1l9965.545Poecilia_mexicana
ENSDORG00000001067Pabpc1l6774.757ENSPREG00000015886pabpc1l9974.757Poecilia_reticulata
ENSDORG00000001067Pabpc1l10085.993ENSPPYG00000011042PABPC1L10085.993Pongo_abelii
ENSDORG00000001067Pabpc1l6287.500ENSPCAG00000011787-7587.500Procavia_capensis
ENSDORG00000001067Pabpc1l9983.415ENSPCOG00000020630PABPC1L9983.415Propithecus_coquereli
ENSDORG00000001067Pabpc1l9982.702ENSPVAG00000012663PABPC1L9982.702Pteropus_vampyrus
ENSDORG00000001067Pabpc1l9870.913ENSPNYG00000004101pabpc1l9970.913Pundamilia_nyererei
ENSDORG00000001067Pabpc1l9961.254ENSPNAG00000021248pabpc1l9961.254Pygocentrus_nattereri
ENSDORG00000001067Pabpc1l9978.120ENSRNOG00000012750Pabpc1l10078.120Rattus_norvegicus
ENSDORG00000001067Pabpc1l9986.111ENSRBIG00000035381PABPC1L9986.111Rhinopithecus_bieti
ENSDORG00000001067Pabpc1l9986.111ENSRROG00000044498PABPC1L10085.831Rhinopithecus_roxellana
ENSDORG00000001067Pabpc1l9984.967ENSSBOG00000009532-9984.967Saimiri_boliviensis_boliviensis
ENSDORG00000001067Pabpc1l9871.575ENSSHAG00000011446PABPC1L10071.575Sarcophilus_harrisii
ENSDORG00000001067Pabpc1l9970.096ENSSFOG00015017304pabpc1l9970.096Scleropages_formosus
ENSDORG00000001067Pabpc1l9964.687ENSSMAG00000010516pabpc1l9882.946Scophthalmus_maximus
ENSDORG00000001067Pabpc1l9965.224ENSSDUG00000014743pabpc1l9965.224Seriola_dumerili
ENSDORG00000001067Pabpc1l9871.635ENSSLDG00000006981pabpc1l9874.886Seriola_lalandi_dorsalis
ENSDORG00000001067Pabpc1l9970.626ENSSPUG00000004233PABPC1L9870.626Sphenodon_punctatus
ENSDORG00000001067Pabpc1l9963.907ENSSPAG00000017137pabpc1l9963.907Stegastes_partitus
ENSDORG00000001067Pabpc1l9982.867ENSSSCG00000007382PABPC1L9982.867Sus_scrofa
ENSDORG00000001067Pabpc1l9971.701ENSTGUG00000005114PABPC1L9971.701Taeniopygia_guttata
ENSDORG00000001067Pabpc1l9766.069ENSTRUG00000011085pabpc1l9766.069Takifugu_rubripes
ENSDORG00000001067Pabpc1l9963.535ENSTNIG00000017903pabpc1l9863.535Tetraodon_nigroviridis
ENSDORG00000001067Pabpc1l9790.411ENSTBEG00000002851PABPC1L8090.411Tupaia_belangeri
ENSDORG00000001067Pabpc1l9482.465ENSTTRG00000007618PABPC1L10082.601Tursiops_truncatus
ENSDORG00000001067Pabpc1l9982.372ENSUAMG00000017682PABPC1L9982.372Ursus_americanus
ENSDORG00000001067Pabpc1l6887.805ENSUMAG00000025436PABPC1L9487.805Ursus_maritimus
ENSDORG00000001067Pabpc1l9988.933ENSVVUG00000018939PABPC1L9988.933Vulpes_vulpes
ENSDORG00000001067Pabpc1l9967.255ENSXETG00000022831pabpc1l9867.255Xenopus_tropicalis
ENSDORG00000001067Pabpc1l9870.047ENSXCOG00000005459pabpc1l9979.433Xiphophorus_couchianus
ENSDORG00000001067Pabpc1l9965.964ENSXMAG00000017135pabpc1l9965.964Xiphophorus_maculatus

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