EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000001875 (Gene tree)
Gene ID: 105999361
Gene Symbol: Pum1
Alias: Pumm
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 91149 bases
Position: chrKN672352.1:8859961-8951109
Accession: 105999361
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000001759	PUF	PF00806.19	2e-70	1	8
ENSDORP00000001759	PUF	PF00806.19	2e-70	2	8
ENSDORP00000001759	PUF	PF00806.19	2e-70	3	8
ENSDORP00000001759	PUF	PF00806.19	2e-70	4	8
ENSDORP00000001759	PUF	PF00806.19	2e-70	5	8
ENSDORP00000001759	PUF	PF00806.19	2e-70	6	8
ENSDORP00000001759	PUF	PF00806.19	2e-70	7	8
ENSDORP00000001759	PUF	PF00806.19	2e-70	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000001875	-	2955	XM_013034339	ENSDORP00000001759	984 (aa)	XP_012889793	UPI000BACFF32

Gene Model

Click here to download ENSDORG00000001875's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000001875's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000001875	Pum1	99	57.288	ENSDORG00000011453	Pum2	93	88.164

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000001875	Pum1	100	99.515	ENSG00000134644	PUM1	94	99.034	Homo_sapiens
ENSDORG00000001875	Pum1	100	71.071	ENSAPOG00000021632	pum1	100	75.624	Acanthochromis_polyacanthus
ENSDORG00000001875	Pum1	100	98.792	ENSAMEG00000017656	PUM1	81	98.792	Ailuropoda_melanoleuca
ENSDORG00000001875	Pum1	100	76.076	ENSAOCG00000003944	pum1	100	78.921	Amphiprion_ocellaris
ENSDORG00000001875	Pum1	100	76.076	ENSAPEG00000014550	pum1	100	78.921	Amphiprion_percula
ENSDORG00000001875	Pum1	100	76.877	ENSATEG00000016004	pum1	100	78.821	Anabas_testudineus
ENSDORG00000001875	Pum1	100	97.826	ENSAPLG00000009351	PUM1	85	97.826	Anas_platyrhynchos
ENSDORG00000001875	Pum1	100	97.826	ENSACAG00000000682	PUM1	82	97.826	Anolis_carolinensis
ENSDORG00000001875	Pum1	100	99.272	ENSANAG00000027865	PUM1	89	98.381	Aotus_nancymaae
ENSDORG00000001875	Pum1	100	99.272	ENSBTAG00000018979	PUM1	89	98.081	Bos_taurus
ENSDORG00000001875	Pum1	100	99.034	ENSCJAG00000006035	PUM1	89	98.381	Callithrix_jacchus
ENSDORG00000001875	Pum1	100	98.792	ENSCAFG00000011205	PUM1	85	98.792	Canis_familiaris
ENSDORG00000001875	Pum1	100	98.792	ENSCAFG00020024616	PUM1	97	98.482	Canis_lupus_dingo
ENSDORG00000001875	Pum1	100	99.272	ENSCHIG00000012952	PUM1	89	98.279	Capra_hircus
ENSDORG00000001875	Pum1	100	99.034	ENSTSYG00000008868	PUM1	85	99.034	Carlito_syrichta
ENSDORG00000001875	Pum1	100	99.517	ENSCPOG00000031613	PUM1	85	99.517	Cavia_porcellus
ENSDORG00000001875	Pum1	100	99.034	ENSCATG00000017991	PUM1	89	96.150	Cercocebus_atys
ENSDORG00000001875	Pum1	100	99.517	ENSCLAG00000007662	PUM1	89	98.684	Chinchilla_lanigera
ENSDORG00000001875	Pum1	100	99.034	ENSCSAG00000001028	PUM1	85	99.034	Chlorocebus_sabaeus
ENSDORG00000001875	Pum1	99	94.097	ENSCHOG00000010245	PUM1	82	94.097	Choloepus_hoffmanni
ENSDORG00000001875	Pum1	100	97.585	ENSCPBG00000009288	PUM1	94	97.585	Chrysemys_picta_bellii
ENSDORG00000001875	Pum1	100	99.034	ENSCANG00000042606	PUM1	89	98.583	Colobus_angolensis_palliatus
ENSDORG00000001875	Pum1	100	99.515	ENSCGRG00001024949	Pum1	85	99.515	Cricetulus_griseus_chok1gshd
ENSDORG00000001875	Pum1	100	99.515	ENSCGRG00000014197	Pum1	85	99.515	Cricetulus_griseus_crigri
ENSDORG00000001875	Pum1	100	61.460	ENSDARG00000099256	pum1	86	92.512	Danio_rerio
ENSDORG00000001875	Pum1	100	98.309	ENSDNOG00000010939	PUM1	85	98.309	Dasypus_novemcinctus
ENSDORG00000001875	Pum1	98	93.212	ENSETEG00000004355	PUM1	82	93.155	Echinops_telfairi
ENSDORG00000001875	Pum1	100	98.309	ENSEASG00005010813	PUM1	85	98.309	Equus_asinus_asinus
ENSDORG00000001875	Pum1	100	98.309	ENSECAG00000021369	PUM1	85	98.309	Equus_caballus
ENSDORG00000001875	Pum1	76	99.415	ENSEEUG00000003871	PUM1	61	99.415	Erinaceus_europaeus
ENSDORG00000001875	Pum1	100	59.310	ENSELUG00000002409	pum1	87	92.995	Esox_lucius
ENSDORG00000001875	Pum1	100	98.792	ENSFCAG00000010374	PUM1	89	98.485	Felis_catus
ENSDORG00000001875	Pum1	100	97.826	ENSFALG00000001214	PUM1	82	97.826	Ficedula_albicollis
ENSDORG00000001875	Pum1	100	99.513	ENSFDAG00000011319	PUM1	85	99.517	Fukomys_damarensis
ENSDORG00000001875	Pum1	90	90.843	ENSGMOG00000010491	pum1	85	90.361	Gadus_morhua
ENSDORG00000001875	Pum1	100	97.826	ENSGALG00000042598	PUM1	85	97.826	Gallus_gallus
ENSDORG00000001875	Pum1	100	76.229	ENSGAFG00000015617	pum1	100	78.579	Gambusia_affinis
ENSDORG00000001875	Pum1	100	97.585	ENSGAGG00000001290	PUM1	94	97.585	Gopherus_agassizii
ENSDORG00000001875	Pum1	100	99.034	ENSGGOG00000011983	PUM1	89	98.583	Gorilla_gorilla
ENSDORG00000001875	Pum1	100	99.270	ENSHGLG00000013819	Pum1	85	99.275	Heterocephalus_glaber_female
ENSDORG00000001875	Pum1	100	99.270	ENSHGLG00100008621	Pum1	85	99.275	Heterocephalus_glaber_male
ENSDORG00000001875	Pum1	100	91.787	ENSIPUG00000020421	pum1	84	91.787	Ictalurus_punctatus
ENSDORG00000001875	Pum1	100	99.517	ENSSTOG00000010757	PUM1	85	99.517	Ictidomys_tridecemlineatus
ENSDORG00000001875	Pum1	100	99.275	ENSJJAG00000000530	Pum1	85	99.275	Jaculus_jaculus
ENSDORG00000001875	Pum1	100	91.325	ENSLBEG00000002527	pum1	85	90.843	Labrus_bergylta
ENSDORG00000001875	Pum1	100	87.050	ENSLACG00000017188	PUM1	85	87.050	Latimeria_chalumnae
ENSDORG00000001875	Pum1	100	95.894	ENSLOCG00000005210	pum1	85	95.894	Lepisosteus_oculatus
ENSDORG00000001875	Pum1	100	98.068	ENSLAFG00000003178	PUM1	85	95.169	Loxodonta_africana
ENSDORG00000001875	Pum1	100	99.034	ENSMFAG00000010291	PUM1	89	98.283	Macaca_fascicularis
ENSDORG00000001875	Pum1	100	99.034	ENSMMUG00000013520	PUM1	89	98.583	Macaca_mulatta
ENSDORG00000001875	Pum1	100	99.034	ENSMNEG00000034639	PUM1	89	98.583	Macaca_nemestrina
ENSDORG00000001875	Pum1	100	99.034	ENSMLEG00000038743	PUM1	89	98.583	Mandrillus_leucophaeus
ENSDORG00000001875	Pum1	100	97.826	ENSMGAG00000000724	PUM1	85	97.826	Meleagris_gallopavo
ENSDORG00000001875	Pum1	100	99.517	ENSMAUG00000022090	Pum1	85	99.517	Mesocricetus_auratus
ENSDORG00000001875	Pum1	100	98.792	ENSMICG00000007713	-	89	98.381	Microcebus_murinus
ENSDORG00000001875	Pum1	100	95.874	ENSMICG00000012213	-	89	95.648	Microcebus_murinus
ENSDORG00000001875	Pum1	100	99.275	ENSMOCG00000015463	Pum1	85	99.275	Microtus_ochrogaster
ENSDORG00000001875	Pum1	100	73.795	ENSMMOG00000019817	pum1	100	75.752	Mola_mola
ENSDORG00000001875	Pum1	100	97.101	ENSMODG00000017067	PUM1	85	97.101	Monodelphis_domestica
ENSDORG00000001875	Pum1	100	77.455	ENSMALG00000016399	pum1	100	79.200	Monopterus_albus
ENSDORG00000001875	Pum1	100	99.757	MGP_CAROLIEiJ_G0026549	Pum1	90	99.757	Mus_caroli
ENSDORG00000001875	Pum1	100	100.000	ENSMUSG00000028580	Pum1	90	100.000	Mus_musculus
ENSDORG00000001875	Pum1	100	100.000	MGP_PahariEiJ_G0028881	Pum1	90	100.000	Mus_pahari
ENSDORG00000001875	Pum1	100	100.000	MGP_SPRETEiJ_G0027529	Pum1	90	100.000	Mus_spretus
ENSDORG00000001875	Pum1	100	98.068	ENSMPUG00000015454	PUM1	85	98.068	Mustela_putorius_furo
ENSDORG00000001875	Pum1	100	99.272	ENSMLUG00000006490	PUM1	85	99.272	Myotis_lucifugus
ENSDORG00000001875	Pum1	100	99.517	ENSNGAG00000002378	Pum1	85	99.517	Nannospalax_galili
ENSDORG00000001875	Pum1	100	97.065	ENSNLEG00000001151	PUM1	89	97.065	Nomascus_leucogenys
ENSDORG00000001875	Pum1	70	100.000	ENSMEUG00000000976	-	60	98.246	Notamacropus_eugenii
ENSDORG00000001875	Pum1	81	100.000	ENSOPRG00000001776	PUM1	55	100.000	Ochotona_princeps
ENSDORG00000001875	Pum1	100	99.517	ENSODEG00000003465	PUM1	85	99.517	Octodon_degus
ENSDORG00000001875	Pum1	90	81.679	ENSOANG00000004902	-	92	80.075	Ornithorhynchus_anatinus
ENSDORG00000001875	Pum1	100	99.029	ENSOCUG00000008641	PUM1	85	99.029	Oryctolagus_cuniculus
ENSDORG00000001875	Pum1	77	92.771	ENSORLG00000011482	pum1	86	90.361	Oryzias_latipes
ENSDORG00000001875	Pum1	100	75.848	ENSOMEG00000009312	pum1	100	76.494	Oryzias_melastigma
ENSDORG00000001875	Pum1	100	93.874	ENSOGAG00000011063	PUM1	85	93.823	Otolemur_garnettii
ENSDORG00000001875	Pum1	100	98.792	ENSOARG00000001899	PUM1	89	98.381	Ovis_aries
ENSDORG00000001875	Pum1	100	99.034	ENSPPAG00000044003	PUM1	89	98.583	Pan_paniscus
ENSDORG00000001875	Pum1	100	98.792	ENSPPRG00000001370	PUM1	82	98.792	Panthera_pardus
ENSDORG00000001875	Pum1	100	98.792	ENSPTIG00000010798	PUM1	82	98.792	Panthera_tigris_altaica
ENSDORG00000001875	Pum1	100	99.034	ENSPTRG00000000453	PUM1	89	98.583	Pan_troglodytes
ENSDORG00000001875	Pum1	100	99.034	ENSPANG00000016338	PUM1	89	98.283	Papio_anubis
ENSDORG00000001875	Pum1	100	79.742	ENSPKIG00000010578	pum1	84	92.995	Paramormyrops_kingsleyae
ENSDORG00000001875	Pum1	100	97.585	ENSPSIG00000014118	PUM1	85	97.585	Pelodiscus_sinensis
ENSDORG00000001875	Pum1	100	99.517	ENSPEMG00000010009	Pum1	85	99.517	Peromyscus_maniculatus_bairdii
ENSDORG00000001875	Pum1	100	97.101	ENSPCIG00000014151	PUM1	89	96.872	Phascolarctos_cinereus
ENSDORG00000001875	Pum1	100	90.602	ENSPFOG00000007289	pum1	90	90.120	Poecilia_formosa
ENSDORG00000001875	Pum1	100	90.602	ENSPLAG00000007256	pum1	86	90.120	Poecilia_latipinna
ENSDORG00000001875	Pum1	100	99.034	ENSPPYG00000001621	PUM1	85	99.034	Pongo_abelii
ENSDORG00000001875	Pum1	81	98.148	ENSPCAG00000001979	PUM1	64	98.148	Procavia_capensis
ENSDORG00000001875	Pum1	100	98.792	ENSPCOG00000004398	PUM1	89	98.381	Propithecus_coquereli
ENSDORG00000001875	Pum1	100	93.543	ENSPVAG00000005207	PUM1	82	93.489	Pteropus_vampyrus
ENSDORG00000001875	Pum1	100	72.172	ENSPNYG00000009518	pum1	85	90.361	Pundamilia_nyererei
ENSDORG00000001875	Pum1	100	100.000	ENSRNOG00000011709	Pum1	85	100.000	Rattus_norvegicus
ENSDORG00000001875	Pum1	100	99.034	ENSRBIG00000042521	PUM1	89	98.283	Rhinopithecus_bieti
ENSDORG00000001875	Pum1	100	99.515	ENSRROG00000020156	PUM1	89	98.583	Rhinopithecus_roxellana
ENSDORG00000001875	Pum1	100	99.034	ENSSBOG00000032037	PUM1	89	98.482	Saimiri_boliviensis_boliviensis
ENSDORG00000001875	Pum1	100	97.101	ENSSHAG00000010918	PUM1	85	97.101	Sarcophilus_harrisii
ENSDORG00000001875	Pum1	100	76.076	ENSSMAG00000010918	pum1	100	77.922	Scophthalmus_maximus
ENSDORG00000001875	Pum1	93	99.034	ENSSARG00000003055	PUM1	77	99.034	Sorex_araneus
ENSDORG00000001875	Pum1	100	97.826	ENSSPUG00000006267	PUM1	85	97.826	Sphenodon_punctatus
ENSDORG00000001875	Pum1	100	76.076	ENSSPAG00000016636	pum1	100	78.921	Stegastes_partitus
ENSDORG00000001875	Pum1	100	98.792	ENSSSCG00000003591	PUM1	89	98.283	Sus_scrofa
ENSDORG00000001875	Pum1	84	96.341	ENSTBEG00000013810	PUM1	71	96.341	Tupaia_belangeri
ENSDORG00000001875	Pum1	100	98.309	ENSTTRG00000007436	PUM1	82	98.309	Tursiops_truncatus
ENSDORG00000001875	Pum1	98	98.377	ENSUAMG00000018262	-	83	98.377	Ursus_americanus
ENSDORG00000001875	Pum1	100	98.182	ENSUMAG00000009211	PUM1	89	98.182	Ursus_maritimus
ENSDORG00000001875	Pum1	91	98.830	ENSVPAG00000005902	PUM1	77	98.830	Vicugna_pacos
ENSDORG00000001875	Pum1	100	99.272	ENSVVUG00000014631	PUM1	89	98.283	Vulpes_vulpes
ENSDORG00000001875	Pum1	100	88.406	ENSXETG00000012904	pum1	84	88.406	Xenopus_tropicalis