EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000001888 (Gene tree)
Gene ID: 105983147
Gene Symbol: Usb1
Alias: USB1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 9608 bases
Position: chrKN672364.1:230834-240441
Accession: 105983147
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000001771	HVSL	PF09749.9	4.5e-64	1	1
ENSDORP00000024821	HVSL	PF09749.9	5e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000001887	-	798	-	ENSDORP00000001771	265 (aa)	-	UPI000BACFF56
ENSDORT00000025628	-	2212	XM_013012950	ENSDORP00000024821	273 (aa)	XP_012868404	A0A1S3EWS7

Gene Model

Click here to download ENSDORG00000001888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000001888's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000001888	Usb1	100	83.019	ENSG00000103005	USB1	100	86.916	Homo_sapiens
ENSDORG00000001888	Usb1	98	48.399	ENSAPOG00000011942	usb1	99	47.143	Acanthochromis_polyacanthus
ENSDORG00000001888	Usb1	100	81.041	ENSAMEG00000017205	USB1	100	79.926	Ailuropoda_melanoleuca
ENSDORG00000001888	Usb1	87	53.043	ENSACIG00000012234	usb1	99	49.632	Amphilophus_citrinellus
ENSDORG00000001888	Usb1	98	49.648	ENSAOCG00000014831	usb1	99	48.239	Amphiprion_ocellaris
ENSDORG00000001888	Usb1	98	50.000	ENSAPEG00000000296	usb1	99	48.592	Amphiprion_percula
ENSDORG00000001888	Usb1	98	49.286	ENSATEG00000009348	usb1	84	51.695	Anabas_testudineus
ENSDORG00000001888	Usb1	85	69.604	ENSAPLG00000002756	USB1	100	70.044	Anas_platyrhynchos
ENSDORG00000001888	Usb1	86	62.445	ENSACAG00000015481	USB1	100	62.445	Anolis_carolinensis
ENSDORG00000001888	Usb1	100	82.264	ENSANAG00000035640	USB1	100	82.264	Aotus_nancymaae
ENSDORG00000001888	Usb1	85	53.571	ENSACLG00000020586	usb1	99	47.183	Astatotilapia_calliptera
ENSDORG00000001888	Usb1	84	51.570	ENSAMXG00000040146	usb1	74	51.570	Astyanax_mexicanus
ENSDORG00000001888	Usb1	100	81.132	ENSBTAG00000015758	USB1	100	81.132	Bos_taurus
ENSDORG00000001888	Usb1	100	82.264	ENSCJAG00000011733	USB1	100	82.264	Callithrix_jacchus
ENSDORG00000001888	Usb1	99	79.044	ENSCAFG00000008556	USB1	73	79.044	Canis_familiaris
ENSDORG00000001888	Usb1	99	79.623	ENSCAFG00020009263	USB1	99	76.923	Canis_lupus_dingo
ENSDORG00000001888	Usb1	100	78.868	ENSCHIG00000024290	USB1	100	78.868	Capra_hircus
ENSDORG00000001888	Usb1	100	81.132	ENSTSYG00000006997	USB1	100	81.132	Carlito_syrichta
ENSDORG00000001888	Usb1	87	67.965	ENSCAPG00000009057	USB1	99	67.965	Cavia_aperea
ENSDORG00000001888	Usb1	100	77.239	ENSCPOG00000014325	USB1	100	76.866	Cavia_porcellus
ENSDORG00000001888	Usb1	100	82.642	ENSCCAG00000022132	USB1	100	82.642	Cebus_capucinus
ENSDORG00000001888	Usb1	100	83.774	ENSCATG00000032174	USB1	100	83.774	Cercocebus_atys
ENSDORG00000001888	Usb1	66	85.227	ENSCLAG00000007363	USB1	100	85.227	Chinchilla_lanigera
ENSDORG00000001888	Usb1	100	83.396	ENSCSAG00000004783	USB1	100	83.396	Chlorocebus_sabaeus
ENSDORG00000001888	Usb1	91	64.876	ENSCPBG00000026943	USB1	100	60.432	Chrysemys_picta_bellii
ENSDORG00000001888	Usb1	83	33.766	ENSCING00000011490	-	85	33.766	Ciona_intestinalis
ENSDORG00000001888	Usb1	83	33.772	ENSCSAVG00000000894	-	92	32.463	Ciona_savignyi
ENSDORG00000001888	Usb1	100	81.887	ENSCANG00000037135	USB1	100	81.887	Colobus_angolensis_palliatus
ENSDORG00000001888	Usb1	100	84.701	ENSCGRG00001011243	USB1	100	83.582	Cricetulus_griseus_chok1gshd
ENSDORG00000001888	Usb1	100	84.701	ENSCGRG00000013252	USB1	100	83.582	Cricetulus_griseus_crigri
ENSDORG00000001888	Usb1	98	46.715	ENSCSEG00000013881	usb1	99	46.350	Cynoglossus_semilaevis
ENSDORG00000001888	Usb1	85	48.261	ENSCVAG00000009252	usb1	98	48.696	Cyprinodon_variegatus
ENSDORG00000001888	Usb1	90	49.372	ENSDARG00000003841	usb1	99	46.182	Danio_rerio
ENSDORG00000001888	Usb1	100	37.818	FBgn0037713	CG16790	100	37.818	Drosophila_melanogaster
ENSDORG00000001888	Usb1	100	65.918	ENSETEG00000019682	USB1	100	65.918	Echinops_telfairi
ENSDORG00000001888	Usb1	84	49.099	ENSEBUG00000005889	usb1	78	49.099	Eptatretus_burgeri
ENSDORG00000001888	Usb1	100	81.887	ENSEASG00005005484	USB1	100	81.887	Equus_asinus_asinus
ENSDORG00000001888	Usb1	100	82.264	ENSECAG00000019493	USB1	91	82.264	Equus_caballus
ENSDORG00000001888	Usb1	66	78.977	ENSEEUG00000000154	USB1	100	60.377	Erinaceus_europaeus
ENSDORG00000001888	Usb1	89	48.523	ENSELUG00000010974	usb1	87	48.523	Esox_lucius
ENSDORG00000001888	Usb1	100	80.150	ENSFCAG00000002693	USB1	100	80.150	Felis_catus
ENSDORG00000001888	Usb1	85	63.839	ENSFALG00000006876	USB1	99	59.398	Ficedula_albicollis
ENSDORG00000001888	Usb1	100	80.899	ENSFDAG00000010052	USB1	100	80.899	Fukomys_damarensis
ENSDORG00000001888	Usb1	86	48.163	ENSFHEG00000012334	usb1	96	47.131	Fundulus_heteroclitus
ENSDORG00000001888	Usb1	84	52.466	ENSGMOG00000004228	usb1	99	52.466	Gadus_morhua
ENSDORG00000001888	Usb1	84	65.625	ENSGALG00000035604	USB1	99	61.597	Gallus_gallus
ENSDORG00000001888	Usb1	98	48.913	ENSGAFG00000021890	usb1	99	47.464	Gambusia_affinis
ENSDORG00000001888	Usb1	85	50.893	ENSGACG00000003257	usb1	99	46.014	Gasterosteus_aculeatus
ENSDORG00000001888	Usb1	100	61.538	ENSGAGG00000022572	USB1	100	61.538	Gopherus_agassizii
ENSDORG00000001888	Usb1	100	83.396	ENSGGOG00000017147	USB1	100	83.396	Gorilla_gorilla
ENSDORG00000001888	Usb1	89	51.695	ENSHBUG00000009823	usb1	84	51.695	Haplochromis_burtoni
ENSDORG00000001888	Usb1	100	80.524	ENSHGLG00000016078	USB1	98	79.401	Heterocephalus_glaber_female
ENSDORG00000001888	Usb1	100	80.524	ENSHGLG00100005562	USB1	98	79.401	Heterocephalus_glaber_male
ENSDORG00000001888	Usb1	82	54.630	ENSHCOG00000015633	usb1	99	51.351	Hippocampus_comes
ENSDORG00000001888	Usb1	97	48.828	ENSIPUG00000008601	usb1	78	54.018	Ictalurus_punctatus
ENSDORG00000001888	Usb1	100	81.319	ENSSTOG00000007548	USB1	100	81.319	Ictidomys_tridecemlineatus
ENSDORG00000001888	Usb1	100	83.521	ENSJJAG00000021859	Usb1	100	83.521	Jaculus_jaculus
ENSDORG00000001888	Usb1	98	47.143	ENSKMAG00000007200	usb1	99	47.143	Kryptolebias_marmoratus
ENSDORG00000001888	Usb1	75	51.010	ENSLBEG00000008452	usb1	64	51.579	Labrus_bergylta
ENSDORG00000001888	Usb1	87	53.846	ENSLACG00000000105	USB1	91	52.963	Latimeria_chalumnae
ENSDORG00000001888	Usb1	95	53.755	ENSLOCG00000000465	usb1	82	56.957	Lepisosteus_oculatus
ENSDORG00000001888	Usb1	100	64.074	ENSLAFG00000002267	USB1	100	64.444	Loxodonta_africana
ENSDORG00000001888	Usb1	100	83.774	ENSMFAG00000003926	USB1	100	83.774	Macaca_fascicularis
ENSDORG00000001888	Usb1	100	83.774	ENSMMUG00000022669	USB1	100	83.774	Macaca_mulatta
ENSDORG00000001888	Usb1	100	83.396	ENSMNEG00000042487	USB1	100	83.396	Macaca_nemestrina
ENSDORG00000001888	Usb1	100	83.774	ENSMLEG00000028756	USB1	100	83.774	Mandrillus_leucophaeus
ENSDORG00000001888	Usb1	98	48.387	ENSMAMG00000015092	usb1	99	47.292	Mastacembelus_armatus
ENSDORG00000001888	Usb1	85	53.571	ENSMZEG00005010008	usb1	99	48.239	Maylandia_zebra
ENSDORG00000001888	Usb1	100	84.270	ENSMAUG00000007832	Usb1	100	84.270	Mesocricetus_auratus
ENSDORG00000001888	Usb1	100	82.264	ENSMICG00000004900	USB1	100	82.264	Microcebus_murinus
ENSDORG00000001888	Usb1	100	81.648	ENSMOCG00000022647	Usb1	100	81.648	Microtus_ochrogaster
ENSDORG00000001888	Usb1	98	50.000	ENSMMOG00000000490	usb1	99	50.385	Mola_mola
ENSDORG00000001888	Usb1	100	66.791	ENSMODG00000014067	USB1	100	64.925	Monodelphis_domestica
ENSDORG00000001888	Usb1	95	47.809	ENSMALG00000005930	usb1	83	49.153	Monopterus_albus
ENSDORG00000001888	Usb1	100	82.022	MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	Mus_caroli
ENSDORG00000001888	Usb1	100	82.022	ENSMUSG00000031792	Usb1	100	84.071	Mus_musculus
ENSDORG00000001888	Usb1	100	81.273	MGP_PahariEiJ_G0023019	Usb1	100	84.615	Mus_pahari
ENSDORG00000001888	Usb1	100	81.273	MGP_SPRETEiJ_G0032540	Usb1	100	81.273	Mus_spretus
ENSDORG00000001888	Usb1	100	78.439	ENSMPUG00000004684	USB1	96	77.323	Mustela_putorius_furo
ENSDORG00000001888	Usb1	87	82.251	ENSMLUG00000007400	USB1	100	82.251	Myotis_lucifugus
ENSDORG00000001888	Usb1	100	81.784	ENSNGAG00000009703	Usb1	100	82.528	Nannospalax_galili
ENSDORG00000001888	Usb1	88	50.215	ENSNBRG00000008747	usb1	99	53.271	Neolamprologus_brichardi
ENSDORG00000001888	Usb1	94	83.200	ENSNLEG00000003340	USB1	100	83.200	Nomascus_leucogenys
ENSDORG00000001888	Usb1	58	57.962	ENSMEUG00000003328	-	100	62.500	Notamacropus_eugenii
ENSDORG00000001888	Usb1	63	88.235	ENSOPRG00000011803	USB1	72	88.235	Ochotona_princeps
ENSDORG00000001888	Usb1	100	78.277	ENSODEG00000016214	USB1	100	78.277	Octodon_degus
ENSDORG00000001888	Usb1	98	50.896	ENSONIG00000011063	usb1	85	52.119	Oreochromis_niloticus
ENSDORG00000001888	Usb1	88	67.949	ENSOANG00000012118	USB1	97	67.949	Ornithorhynchus_anatinus
ENSDORG00000001888	Usb1	85	50.000	ENSORLG00000012479	usb1	99	45.387	Oryzias_latipes
ENSDORG00000001888	Usb1	85	50.000	ENSORLG00020018671	usb1	99	45.185	Oryzias_latipes_hni
ENSDORG00000001888	Usb1	85	50.000	ENSORLG00015009679	usb1	83	50.000	Oryzias_latipes_hsok
ENSDORG00000001888	Usb1	85	50.000	ENSOMEG00000012930	usb1	99	46.182	Oryzias_melastigma
ENSDORG00000001888	Usb1	100	76.226	ENSOGAG00000003273	USB1	100	76.226	Otolemur_garnettii
ENSDORG00000001888	Usb1	95	77.470	ENSOARG00000001107	USB1	93	80.165	Ovis_aries
ENSDORG00000001888	Usb1	100	83.774	ENSPPAG00000042137	USB1	100	83.774	Pan_paniscus
ENSDORG00000001888	Usb1	100	79.775	ENSPPRG00000024797	USB1	100	79.775	Panthera_pardus
ENSDORG00000001888	Usb1	100	79.775	ENSPTIG00000007506	USB1	100	79.775	Panthera_tigris_altaica
ENSDORG00000001888	Usb1	100	76.226	ENSPTRG00000008172	USB1	100	87.383	Pan_troglodytes
ENSDORG00000001888	Usb1	100	83.774	ENSPANG00000025138	USB1	100	83.774	Papio_anubis
ENSDORG00000001888	Usb1	96	49.804	ENSPKIG00000015109	usb1	99	46.780	Paramormyrops_kingsleyae
ENSDORG00000001888	Usb1	85	50.442	ENSPSIG00000004305	USB1	100	50.442	Pelodiscus_sinensis
ENSDORG00000001888	Usb1	84	52.018	ENSPMGG00000017725	usb1	85	52.018	Periophthalmus_magnuspinnatus
ENSDORG00000001888	Usb1	100	81.319	ENSPEMG00000016183	Usb1	100	81.319	Peromyscus_maniculatus_bairdii
ENSDORG00000001888	Usb1	85	50.442	ENSPMAG00000000462	usb1	95	50.442	Petromyzon_marinus
ENSDORG00000001888	Usb1	98	48.375	ENSPFOG00000011130	usb1	99	47.101	Poecilia_formosa
ENSDORG00000001888	Usb1	98	48.375	ENSPLAG00000009820	usb1	99	47.101	Poecilia_latipinna
ENSDORG00000001888	Usb1	98	48.375	ENSPMEG00000006402	usb1	99	46.739	Poecilia_mexicana
ENSDORG00000001888	Usb1	86	48.560	ENSPREG00000001047	usb1	98	47.934	Poecilia_reticulata
ENSDORG00000001888	Usb1	95	80.159	ENSPPYG00000007401	USB1	100	80.159	Pongo_abelii
ENSDORG00000001888	Usb1	100	82.264	ENSPCOG00000022612	USB1	100	82.264	Propithecus_coquereli
ENSDORG00000001888	Usb1	100	78.868	ENSPVAG00000004613	USB1	100	78.868	Pteropus_vampyrus
ENSDORG00000001888	Usb1	89	51.695	ENSPNYG00000022262	usb1	84	51.695	Pundamilia_nyererei
ENSDORG00000001888	Usb1	98	48.276	ENSPNAG00000011736	usb1	81	50.628	Pygocentrus_nattereri
ENSDORG00000001888	Usb1	100	82.022	ENSRNOG00000013216	Usb1	100	82.022	Rattus_norvegicus
ENSDORG00000001888	Usb1	100	76.604	ENSRBIG00000044466	USB1	100	87.383	Rhinopithecus_bieti
ENSDORG00000001888	Usb1	100	83.019	ENSRROG00000029211	USB1	100	83.019	Rhinopithecus_roxellana
ENSDORG00000001888	Usb1	100	81.509	ENSSBOG00000029362	USB1	100	81.509	Saimiri_boliviensis_boliviensis
ENSDORG00000001888	Usb1	83	69.863	ENSSHAG00000006993	USB1	94	68.201	Sarcophilus_harrisii
ENSDORG00000001888	Usb1	86	55.507	ENSSFOG00015023663	usb1	71	55.507	Scleropages_formosus
ENSDORG00000001888	Usb1	98	48.201	ENSSMAG00000015834	usb1	84	49.600	Scophthalmus_maximus
ENSDORG00000001888	Usb1	85	53.571	ENSSDUG00000002949	usb1	83	53.571	Seriola_dumerili
ENSDORG00000001888	Usb1	85	53.571	ENSSLDG00000014174	usb1	80	53.571	Seriola_lalandi_dorsalis
ENSDORG00000001888	Usb1	81	68.224	ENSSPUG00000006741	USB1	100	68.224	Sphenodon_punctatus
ENSDORG00000001888	Usb1	98	46.479	ENSSPAG00000007484	usb1	83	49.153	Stegastes_partitus
ENSDORG00000001888	Usb1	100	81.413	ENSSSCG00000002807	USB1	100	80.586	Sus_scrofa
ENSDORG00000001888	Usb1	80	67.453	ENSTGUG00000004792	USB1	87	66.216	Taeniopygia_guttata
ENSDORG00000001888	Usb1	98	48.134	ENSTRUG00000021069	usb1	99	47.761	Takifugu_rubripes
ENSDORG00000001888	Usb1	98	45.385	ENSTNIG00000000626	usb1	98	43.846	Tetraodon_nigroviridis
ENSDORG00000001888	Usb1	88	58.190	ENSTBEG00000001507	USB1	100	58.190	Tupaia_belangeri
ENSDORG00000001888	Usb1	100	80.669	ENSUAMG00000016823	USB1	100	79.554	Ursus_americanus
ENSDORG00000001888	Usb1	81	83.178	ENSUMAG00000021369	USB1	100	83.178	Ursus_maritimus
ENSDORG00000001888	Usb1	77	56.158	ENSVPAG00000009834	-	59	80.833	Vicugna_pacos
ENSDORG00000001888	Usb1	99	78.731	ENSVVUG00000023700	USB1	89	82.684	Vulpes_vulpes
ENSDORG00000001888	Usb1	98	51.724	ENSXETG00000013795	usb1	89	57.399	Xenopus_tropicalis
ENSDORG00000001888	Usb1	95	48.810	ENSXMAG00000024687	usb1	80	47.755	Xiphophorus_maculatus