EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000002399 (Gene tree)
Gene ID: 105983692
Gene Symbol: Sf3b1
Alias: 2810001M05Rik|Prp10|SAP155|SF3b155|Targ4
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 30640 bases
Position: chrKN672347.1:34887563-34918202
Accession: 105983692
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000002254	SF3b1	PF08920.10	3.2e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000002399	-	4106	XM_013013707	ENSDORP00000002254	1260 (aa)	XP_012869161	UPI000BAD17AC

Gene Model

Click here to download ENSDORG00000002399's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000002399's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000002399	Sf3b1	100	97.297	ENSG00000115524	SF3B1	99	97.297	Homo_sapiens
ENSDORG00000002399	Sf3b1	100	91.660	ENSAPOG00000011894	sf3b1	99	91.737	Acanthochromis_polyacanthus
ENSDORG00000002399	Sf3b1	100	97.222	ENSAMEG00000013809	SF3B1	99	97.222	Ailuropoda_melanoleuca
ENSDORG00000002399	Sf3b1	100	91.091	ENSACIG00000020910	sf3b1	96	91.091	Amphilophus_citrinellus
ENSDORG00000002399	Sf3b1	100	91.660	ENSAOCG00000004478	sf3b1	99	91.737	Amphiprion_ocellaris
ENSDORG00000002399	Sf3b1	100	91.660	ENSAPEG00000012937	sf3b1	99	91.737	Amphiprion_percula
ENSDORG00000002399	Sf3b1	100	91.730	ENSATEG00000020435	sf3b1	99	91.865	Anabas_testudineus
ENSDORG00000002399	Sf3b1	100	96.909	ENSAPLG00000003993	SF3B1	99	96.909	Anas_platyrhynchos
ENSDORG00000002399	Sf3b1	100	96.368	ENSACAG00000009612	SF3B1	99	96.368	Anolis_carolinensis
ENSDORG00000002399	Sf3b1	100	97.297	ENSANAG00000021577	SF3B1	100	100.000	Aotus_nancymaae
ENSDORG00000002399	Sf3b1	100	90.735	ENSACLG00000023470	sf3b1	99	90.735	Astatotilapia_calliptera
ENSDORG00000002399	Sf3b1	100	92.113	ENSAMXG00000002219	sf3b1	99	92.113	Astyanax_mexicanus
ENSDORG00000002399	Sf3b1	100	97.220	ENSBTAG00000008915	SF3B1	99	97.220	Bos_taurus
ENSDORG00000002399	Sf3b1	97	68.735	WBGene00011605	sftb-1	93	68.815	Caenorhabditis_elegans
ENSDORG00000002399	Sf3b1	100	97.297	ENSCJAG00000003902	SF3B1	99	97.297	Callithrix_jacchus
ENSDORG00000002399	Sf3b1	100	97.297	ENSCAFG00000010826	SF3B1	99	97.297	Canis_familiaris
ENSDORG00000002399	Sf3b1	100	97.297	ENSCAFG00020004750	SF3B1	99	97.297	Canis_lupus_dingo
ENSDORG00000002399	Sf3b1	100	97.220	ENSCHIG00000015226	SF3B1	99	97.220	Capra_hircus
ENSDORG00000002399	Sf3b1	100	97.220	ENSTSYG00000009214	SF3B1	99	97.220	Carlito_syrichta
ENSDORG00000002399	Sf3b1	100	97.297	ENSCAPG00000006547	SF3B1	99	97.297	Cavia_aperea
ENSDORG00000002399	Sf3b1	100	97.297	ENSCPOG00000009353	SF3B1	100	97.295	Cavia_porcellus
ENSDORG00000002399	Sf3b1	100	97.297	ENSCCAG00000020506	SF3B1	99	97.297	Cebus_capucinus
ENSDORG00000002399	Sf3b1	100	97.297	ENSCATG00000035735	SF3B1	99	97.297	Cercocebus_atys
ENSDORG00000002399	Sf3b1	100	97.297	ENSCLAG00000014767	SF3B1	99	97.297	Chinchilla_lanigera
ENSDORG00000002399	Sf3b1	100	97.297	ENSCSAG00000011505	SF3B1	99	97.297	Chlorocebus_sabaeus
ENSDORG00000002399	Sf3b1	78	98.214	ENSCHOG00000009860	SF3B1	75	98.214	Choloepus_hoffmanni
ENSDORG00000002399	Sf3b1	100	96.677	ENSCPBG00000021902	SF3B1	99	99.406	Chrysemys_picta_bellii
ENSDORG00000002399	Sf3b1	68	79.128	ENSCING00000002558	-	96	79.128	Ciona_intestinalis
ENSDORG00000002399	Sf3b1	100	78.582	ENSCSAVG00000002559	-	99	78.582	Ciona_savignyi
ENSDORG00000002399	Sf3b1	100	97.297	ENSCANG00000029415	SF3B1	99	97.297	Colobus_angolensis_palliatus
ENSDORG00000002399	Sf3b1	100	97.297	ENSCGRG00001016990	Sf3b1	99	97.297	Cricetulus_griseus_chok1gshd
ENSDORG00000002399	Sf3b1	100	97.297	ENSCGRG00000005301	Sf3b1	99	97.297	Cricetulus_griseus_crigri
ENSDORG00000002399	Sf3b1	100	88.172	ENSCSEG00000003860	sf3b1	99	88.172	Cynoglossus_semilaevis
ENSDORG00000002399	Sf3b1	96	91.713	ENSCVAG00000003680	sf3b1	99	91.793	Cyprinodon_variegatus
ENSDORG00000002399	Sf3b1	100	91.507	ENSDARG00000056138	sf3b1	99	91.584	Danio_rerio
ENSDORG00000002399	Sf3b1	100	97.222	ENSDNOG00000011754	SF3B1	99	97.222	Dasypus_novemcinctus
ENSDORG00000002399	Sf3b1	100	76.074	FBgn0031266	Sf3b1	99	76.074	Drosophila_melanogaster
ENSDORG00000002399	Sf3b1	83	96.104	ENSETEG00000009188	SF3B1	100	96.104	Echinops_telfairi
ENSDORG00000002399	Sf3b1	100	85.813	ENSEBUG00000004325	sf3b1	100	90.191	Eptatretus_burgeri
ENSDORG00000002399	Sf3b1	100	97.220	ENSEASG00005020159	SF3B1	97	97.220	Equus_asinus_asinus
ENSDORG00000002399	Sf3b1	100	97.220	ENSECAG00000021657	SF3B1	97	97.220	Equus_caballus
ENSDORG00000002399	Sf3b1	86	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSDORG00000002399	Sf3b1	100	90.722	ENSELUG00000005977	sf3b1	97	91.027	Esox_lucius
ENSDORG00000002399	Sf3b1	100	97.297	ENSFCAG00000005038	SF3B1	99	97.297	Felis_catus
ENSDORG00000002399	Sf3b1	100	96.986	ENSFALG00000004281	SF3B1	99	96.986	Ficedula_albicollis
ENSDORG00000002399	Sf3b1	100	97.297	ENSFDAG00000017510	SF3B1	99	97.297	Fukomys_damarensis
ENSDORG00000002399	Sf3b1	100	91.278	ENSFHEG00000014333	sf3b1	99	91.354	Fundulus_heteroclitus
ENSDORG00000002399	Sf3b1	100	91.264	ENSGMOG00000006773	sf3b1	99	91.341	Gadus_morhua
ENSDORG00000002399	Sf3b1	100	96.909	ENSGALG00000008038	SF3B1	99	96.909	Gallus_gallus
ENSDORG00000002399	Sf3b1	99	91.429	ENSGAFG00000000704	sf3b1	99	91.506	Gambusia_affinis
ENSDORG00000002399	Sf3b1	100	91.404	ENSGACG00000008839	sf3b1	99	91.481	Gasterosteus_aculeatus
ENSDORG00000002399	Sf3b1	100	96.677	ENSGAGG00000017478	SF3B1	99	96.677	Gopherus_agassizii
ENSDORG00000002399	Sf3b1	100	90.483	ENSGGOG00000009264	SF3B1	99	91.538	Gorilla_gorilla
ENSDORG00000002399	Sf3b1	99	90.798	ENSHBUG00000007705	sf3b1	99	90.798	Haplochromis_burtoni
ENSDORG00000002399	Sf3b1	100	97.297	ENSHGLG00000008285	-	99	97.297	Heterocephalus_glaber_female
ENSDORG00000002399	Sf3b1	100	95.290	ENSHGLG00100005535	-	99	95.290	Heterocephalus_glaber_male
ENSDORG00000002399	Sf3b1	100	91.020	ENSHCOG00000016775	sf3b1	99	91.172	Hippocampus_comes
ENSDORG00000002399	Sf3b1	100	91.960	ENSIPUG00000013171	sf3b1	99	91.960	Ictalurus_punctatus
ENSDORG00000002399	Sf3b1	100	99.921	ENSSTOG00000011034	SF3B1	99	99.921	Ictidomys_tridecemlineatus
ENSDORG00000002399	Sf3b1	99	97.209	ENSJJAG00000010903	Sf3b1	99	97.209	Jaculus_jaculus
ENSDORG00000002399	Sf3b1	100	90.992	ENSKMAG00000004009	sf3b1	99	91.069	Kryptolebias_marmoratus
ENSDORG00000002399	Sf3b1	100	91.615	ENSLBEG00000022208	sf3b1	99	91.615	Labrus_bergylta
ENSDORG00000002399	Sf3b1	99	90.345	ENSLACG00000014832	SF3B1	99	90.345	Latimeria_chalumnae
ENSDORG00000002399	Sf3b1	100	92.508	ENSLOCG00000003899	sf3b1	99	92.661	Lepisosteus_oculatus
ENSDORG00000002399	Sf3b1	100	97.297	ENSLAFG00000001956	SF3B1	99	97.297	Loxodonta_africana
ENSDORG00000002399	Sf3b1	100	97.297	ENSMMUG00000022430	SF3B1	99	97.297	Macaca_mulatta
ENSDORG00000002399	Sf3b1	100	97.297	ENSMNEG00000042333	SF3B1	100	100.000	Macaca_nemestrina
ENSDORG00000002399	Sf3b1	96	93.218	ENSMLEG00000026141	SF3B1	96	93.781	Mandrillus_leucophaeus
ENSDORG00000002399	Sf3b1	100	91.577	ENSMAMG00000010241	sf3b1	99	91.654	Mastacembelus_armatus
ENSDORG00000002399	Sf3b1	100	90.735	ENSMZEG00005021254	sf3b1	99	90.735	Maylandia_zebra
ENSDORG00000002399	Sf3b1	100	96.291	ENSMGAG00000007017	SF3B1	99	96.291	Meleagris_gallopavo
ENSDORG00000002399	Sf3b1	100	92.973	ENSMAUG00000009071	Sf3b1	99	93.050	Mesocricetus_auratus
ENSDORG00000002399	Sf3b1	100	97.220	ENSMICG00000013879	SF3B1	99	97.220	Microcebus_murinus
ENSDORG00000002399	Sf3b1	100	92.896	ENSMOCG00000000455	Sf3b1	99	92.896	Microtus_ochrogaster
ENSDORG00000002399	Sf3b1	83	90.599	ENSMMOG00000000475	sf3b1	99	90.691	Mola_mola
ENSDORG00000002399	Sf3b1	100	96.911	ENSMODG00000012275	SF3B1	99	96.911	Monodelphis_domestica
ENSDORG00000002399	Sf3b1	100	91.501	ENSMALG00000017211	sf3b1	99	91.577	Monopterus_albus
ENSDORG00000002399	Sf3b1	100	97.297	MGP_CAROLIEiJ_G0014141	Sf3b1	99	97.297	Mus_caroli
ENSDORG00000002399	Sf3b1	100	97.297	ENSMUSG00000025982	Sf3b1	99	97.297	Mus_musculus
ENSDORG00000002399	Sf3b1	100	97.297	MGP_SPRETEiJ_G0014947	Sf3b1	99	97.297	Mus_spretus
ENSDORG00000002399	Sf3b1	100	97.297	ENSMPUG00000007799	SF3B1	99	97.297	Mustela_putorius_furo
ENSDORG00000002399	Sf3b1	100	96.062	ENSMLUG00000000840	SF3B1	99	96.062	Myotis_lucifugus
ENSDORG00000002399	Sf3b1	99	97.295	ENSNGAG00000021884	-	99	97.295	Nannospalax_galili
ENSDORG00000002399	Sf3b1	100	90.195	ENSNBRG00000015816	sf3b1	99	90.195	Neolamprologus_brichardi
ENSDORG00000002399	Sf3b1	100	97.297	ENSNLEG00000006861	SF3B1	99	97.297	Nomascus_leucogenys
ENSDORG00000002399	Sf3b1	71	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSDORG00000002399	Sf3b1	100	88.031	ENSOPRG00000008596	SF3B1	99	88.031	Ochotona_princeps
ENSDORG00000002399	Sf3b1	100	97.297	ENSODEG00000011153	-	99	97.297	Octodon_degus
ENSDORG00000002399	Sf3b1	100	90.735	ENSONIG00000013758	sf3b1	99	90.735	Oreochromis_niloticus
ENSDORG00000002399	Sf3b1	86	98.985	ENSOCUG00000012722	-	96	98.985	Oryctolagus_cuniculus
ENSDORG00000002399	Sf3b1	100	91.424	ENSORLG00000020219	sf3b1	99	91.501	Oryzias_latipes
ENSDORG00000002399	Sf3b1	100	91.424	ENSORLG00020001746	sf3b1	99	91.501	Oryzias_latipes_hni
ENSDORG00000002399	Sf3b1	63	87.831	ENSORLG00015001759	sf3b1	97	87.952	Oryzias_latipes_hsok
ENSDORG00000002399	Sf3b1	100	91.431	ENSOMEG00000019231	sf3b1	99	91.584	Oryzias_melastigma
ENSDORG00000002399	Sf3b1	100	97.220	ENSOARG00000015374	SF3B1	99	97.220	Ovis_aries
ENSDORG00000002399	Sf3b1	100	97.297	ENSPPAG00000035007	SF3B1	99	97.297	Pan_paniscus
ENSDORG00000002399	Sf3b1	100	97.297	ENSPPRG00000009090	SF3B1	99	97.297	Panthera_pardus
ENSDORG00000002399	Sf3b1	100	97.297	ENSPTIG00000021557	SF3B1	99	97.297	Panthera_tigris_altaica
ENSDORG00000002399	Sf3b1	100	88.684	ENSPTRG00000012771	SF3B1	99	88.761	Pan_troglodytes
ENSDORG00000002399	Sf3b1	100	97.297	ENSPANG00000013417	SF3B1	99	97.297	Papio_anubis
ENSDORG00000002399	Sf3b1	100	92.868	ENSPKIG00000000784	sf3b1	99	92.945	Paramormyrops_kingsleyae
ENSDORG00000002399	Sf3b1	99	95.437	ENSPSIG00000017222	SF3B1	98	95.437	Pelodiscus_sinensis
ENSDORG00000002399	Sf3b1	90	92.014	ENSPMGG00000004330	sf3b1	98	92.014	Periophthalmus_magnuspinnatus
ENSDORG00000002399	Sf3b1	100	97.297	ENSPEMG00000010699	Sf3b1	100	97.297	Peromyscus_maniculatus_bairdii
ENSDORG00000002399	Sf3b1	100	88.600	ENSPMAG00000001311	sf3b1	99	88.906	Petromyzon_marinus
ENSDORG00000002399	Sf3b1	100	96.834	ENSPCIG00000010642	SF3B1	99	96.834	Phascolarctos_cinereus
ENSDORG00000002399	Sf3b1	100	91.208	ENSPFOG00000000073	sf3b1	99	91.361	Poecilia_formosa
ENSDORG00000002399	Sf3b1	100	91.354	ENSPLAG00000002293	sf3b1	99	91.431	Poecilia_latipinna
ENSDORG00000002399	Sf3b1	100	91.354	ENSPMEG00000000446	sf3b1	97	91.431	Poecilia_mexicana
ENSDORG00000002399	Sf3b1	100	91.431	ENSPREG00000019652	sf3b1	99	91.507	Poecilia_reticulata
ENSDORG00000002399	Sf3b1	87	98.814	ENSPPYG00000013044	SF3B1	96	98.814	Pongo_abelii
ENSDORG00000002399	Sf3b1	100	97.143	ENSPCAG00000009292	SF3B1	99	97.143	Procavia_capensis
ENSDORG00000002399	Sf3b1	100	97.220	ENSPCOG00000024074	SF3B1	99	97.220	Propithecus_coquereli
ENSDORG00000002399	Sf3b1	100	97.297	ENSPVAG00000008302	SF3B1	99	97.297	Pteropus_vampyrus
ENSDORG00000002399	Sf3b1	100	90.735	ENSPNYG00000014939	sf3b1	99	90.735	Pundamilia_nyererei
ENSDORG00000002399	Sf3b1	100	91.807	ENSPNAG00000008288	sf3b1	99	91.960	Pygocentrus_nattereri
ENSDORG00000002399	Sf3b1	100	97.297	ENSRNOG00000013516	Sf3b1	99	97.297	Rattus_norvegicus
ENSDORG00000002399	Sf3b1	100	93.745	ENSRBIG00000026096	SF3B1	99	93.745	Rhinopithecus_bieti
ENSDORG00000002399	Sf3b1	100	97.297	ENSRROG00000031308	SF3B1	99	97.297	Rhinopithecus_roxellana
ENSDORG00000002399	Sf3b1	100	97.297	ENSSBOG00000020080	SF3B1	99	97.297	Saimiri_boliviensis_boliviensis
ENSDORG00000002399	Sf3b1	100	96.911	ENSSHAG00000017564	SF3B1	99	96.911	Sarcophilus_harrisii
ENSDORG00000002399	Sf3b1	100	92.655	ENSSFOG00015021535	sf3b1	99	92.731	Scleropages_formosus
ENSDORG00000002399	Sf3b1	99	90.840	ENSSMAG00000013977	sf3b1	98	90.916	Scophthalmus_maximus
ENSDORG00000002399	Sf3b1	100	91.348	ENSSDUG00000017422	sf3b1	99	91.424	Seriola_dumerili
ENSDORG00000002399	Sf3b1	100	91.271	ENSSLDG00000019495	sf3b1	99	91.348	Seriola_lalandi_dorsalis
ENSDORG00000002399	Sf3b1	76	100.000	ENSSARG00000007016	SF3B1	73	100.000	Sorex_araneus
ENSDORG00000002399	Sf3b1	100	96.522	ENSSPUG00000000410	SF3B1	99	96.522	Sphenodon_punctatus
ENSDORG00000002399	Sf3b1	100	91.654	ENSSPAG00000010451	sf3b1	98	91.730	Stegastes_partitus
ENSDORG00000002399	Sf3b1	92	100.000	ENSSSCG00000016075	SF3B1	100	100.000	Sus_scrofa
ENSDORG00000002399	Sf3b1	100	96.832	ENSTGUG00000010553	SF3B1	99	96.832	Taeniopygia_guttata
ENSDORG00000002399	Sf3b1	100	91.348	ENSTRUG00000015534	sf3b1	99	91.348	Takifugu_rubripes
ENSDORG00000002399	Sf3b1	87	99.793	ENSTBEG00000008714	SF3B1	92	99.793	Tupaia_belangeri
ENSDORG00000002399	Sf3b1	92	94.185	ENSTTRG00000003414	SF3B1	92	94.185	Tursiops_truncatus
ENSDORG00000002399	Sf3b1	94	89.867	ENSUAMG00000018506	SF3B1	99	99.190	Ursus_americanus
ENSDORG00000002399	Sf3b1	100	97.297	ENSUMAG00000020945	SF3B1	99	97.297	Ursus_maritimus
ENSDORG00000002399	Sf3b1	100	89.112	ENSVPAG00000005798	SF3B1	99	89.112	Vicugna_pacos
ENSDORG00000002399	Sf3b1	100	97.297	ENSVVUG00000025948	SF3B1	94	97.297	Vulpes_vulpes
ENSDORG00000002399	Sf3b1	100	94.664	ENSXETG00000013339	sf3b1	99	94.664	Xenopus_tropicalis
ENSDORG00000002399	Sf3b1	100	87.827	ENSXCOG00000018086	sf3b1	99	87.797	Xiphophorus_couchianus
ENSDORG00000002399	Sf3b1	100	91.354	ENSXMAG00000007369	sf3b1	99	91.705	Xiphophorus_maculatus