EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000002478 (Gene tree)
Gene ID: 105984499
Gene Symbol: Upf2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 101235 bases
Position: chrKN672370.1:17822158-17923392
Accession: 105984499
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000002327	Upf2	PF04050.14	7.6e-33	1	1
ENSDORP00000002327	MIF4G	PF02854.19	2.3e-76	1	3
ENSDORP00000002327	MIF4G	PF02854.19	2.3e-76	2	3
ENSDORP00000002327	MIF4G	PF02854.19	2.3e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000002478	-	5176	XM_013014705	ENSDORP00000002327	1270 (aa)	XP_012870159	A0A1S3F1X1

Gene Model

Click here to download ENSDORG00000002478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000002478's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000002478	Upf2	100	96.934	ENSG00000151461	UPF2	100	96.934	Homo_sapiens
ENSDORG00000002478	Upf2	99	78.448	ENSAPOG00000015837	UPF2	100	78.292	Acanthochromis_polyacanthus
ENSDORG00000002478	Upf2	100	97.640	ENSAMEG00000004586	UPF2	100	97.640	Ailuropoda_melanoleuca
ENSDORG00000002478	Upf2	99	82.656	ENSACIG00000018078	UPF2	100	82.500	Amphilophus_citrinellus
ENSDORG00000002478	Upf2	100	82.371	ENSAOCG00000016766	UPF2	100	82.449	Amphiprion_ocellaris
ENSDORG00000002478	Upf2	100	82.449	ENSAPEG00000019084	UPF2	100	82.527	Amphiprion_percula
ENSDORG00000002478	Upf2	100	82.504	ENSATEG00000021677	UPF2	99	82.399	Anabas_testudineus
ENSDORG00000002478	Upf2	100	86.703	ENSAPLG00000010287	UPF2	90	91.043	Anas_platyrhynchos
ENSDORG00000002478	Upf2	100	91.660	ENSACAG00000009259	UPF2	100	91.345	Anolis_carolinensis
ENSDORG00000002478	Upf2	99	86.792	ENSANAG00000028451	UPF2	99	85.377	Aotus_nancymaae
ENSDORG00000002478	Upf2	100	80.889	ENSACLG00000012696	UPF2	100	82.683	Astatotilapia_calliptera
ENSDORG00000002478	Upf2	99	83.555	ENSAMXG00000013700	UPF2	99	83.634	Astyanax_mexicanus
ENSDORG00000002478	Upf2	100	97.876	ENSBTAG00000000288	UPF2	100	97.876	Bos_taurus
ENSDORG00000002478	Upf2	100	96.855	ENSCJAG00000020685	UPF2	100	96.855	Callithrix_jacchus
ENSDORG00000002478	Upf2	100	97.954	ENSCAFG00000004839	UPF2	100	97.954	Canis_familiaris
ENSDORG00000002478	Upf2	99	95.662	ENSCAFG00020005882	UPF2	98	97.923	Canis_lupus_dingo
ENSDORG00000002478	Upf2	100	97.954	ENSCHIG00000020359	UPF2	100	97.954	Capra_hircus
ENSDORG00000002478	Upf2	100	96.774	ENSTSYG00000000935	UPF2	100	96.774	Carlito_syrichta
ENSDORG00000002478	Upf2	91	86.145	ENSCAPG00000016658	UPF2	95	86.231	Cavia_aperea
ENSDORG00000002478	Upf2	99	96.038	ENSCPOG00000008809	UPF2	100	96.038	Cavia_porcellus
ENSDORG00000002478	Upf2	100	90.480	ENSCCAG00000035991	UPF2	100	90.566	Cebus_capucinus
ENSDORG00000002478	Upf2	100	97.170	ENSCATG00000032679	UPF2	100	97.170	Cercocebus_atys
ENSDORG00000002478	Upf2	100	97.954	ENSCLAG00000011434	UPF2	100	97.954	Chinchilla_lanigera
ENSDORG00000002478	Upf2	100	97.170	ENSCSAG00000013372	UPF2	100	97.170	Chlorocebus_sabaeus
ENSDORG00000002478	Upf2	87	98.661	ENSCHOG00000000422	UPF2	89	98.661	Choloepus_hoffmanni
ENSDORG00000002478	Upf2	99	92.356	ENSCPBG00000027823	UPF2	100	92.041	Chrysemys_picta_bellii
ENSDORG00000002478	Upf2	79	48.974	ENSCSAVG00000007772	-	79	50.382	Ciona_savignyi
ENSDORG00000002478	Upf2	99	91.009	ENSCANG00000040396	UPF2	100	91.654	Colobus_angolensis_palliatus
ENSDORG00000002478	Upf2	100	98.110	ENSCGRG00001019347	Upf2	100	98.110	Cricetulus_griseus_chok1gshd
ENSDORG00000002478	Upf2	100	98.110	ENSCGRG00000017993	Upf2	100	98.110	Cricetulus_griseus_crigri
ENSDORG00000002478	Upf2	91	80.379	ENSCSEG00000003520	UPF2	80	79.861	Cynoglossus_semilaevis
ENSDORG00000002478	Upf2	99	82.168	ENSCVAG00000006167	UPF2	100	81.854	Cyprinodon_variegatus
ENSDORG00000002478	Upf2	100	97.482	ENSDNOG00000018160	UPF2	100	97.482	Dasypus_novemcinctus
ENSDORG00000002478	Upf2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSDORG00000002478	Upf2	64	73.333	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSDORG00000002478	Upf2	100	97.640	ENSEASG00005019274	UPF2	100	97.666	Equus_asinus_asinus
ENSDORG00000002478	Upf2	100	97.718	ENSECAG00000017022	UPF2	100	97.718	Equus_caballus
ENSDORG00000002478	Upf2	82	92.013	ENSEEUG00000007819	UPF2	82	91.693	Erinaceus_europaeus
ENSDORG00000002478	Upf2	99	81.314	ENSELUG00000012014	UPF2	100	81.882	Esox_lucius
ENSDORG00000002478	Upf2	100	97.790	ENSFCAG00000005785	UPF2	100	97.482	Felis_catus
ENSDORG00000002478	Upf2	100	92.368	ENSFALG00000001889	UPF2	98	92.840	Ficedula_albicollis
ENSDORG00000002478	Upf2	100	97.717	ENSFDAG00000014348	UPF2	100	97.717	Fukomys_damarensis
ENSDORG00000002478	Upf2	99	82.688	ENSFHEG00000009826	UPF2	99	82.502	Fundulus_heteroclitus
ENSDORG00000002478	Upf2	91	83.578	ENSGMOG00000005557	UPF2	100	77.952	Gadus_morhua
ENSDORG00000002478	Upf2	100	92.531	ENSGALG00000033772	UPF2	100	93.003	Gallus_gallus
ENSDORG00000002478	Upf2	100	79.407	ENSGAFG00000020867	UPF2	100	81.123	Gambusia_affinis
ENSDORG00000002478	Upf2	90	83.952	ENSGACG00000001080	UPF2	100	82.031	Gasterosteus_aculeatus
ENSDORG00000002478	Upf2	100	92.683	ENSGAGG00000002700	UPF2	100	92.526	Gopherus_agassizii
ENSDORG00000002478	Upf2	100	96.934	ENSGGOG00000001479	UPF2	100	96.934	Gorilla_gorilla
ENSDORG00000002478	Upf2	100	80.811	ENSHBUG00000004249	UPF2	100	82.734	Haplochromis_burtoni
ENSDORG00000002478	Upf2	99	86.772	ENSHGLG00000003822	-	99	84.634	Heterocephalus_glaber_female
ENSDORG00000002478	Upf2	100	97.797	ENSHGLG00000015176	-	100	97.797	Heterocephalus_glaber_female
ENSDORG00000002478	Upf2	99	94.795	ENSHGLG00100010036	UPF2	100	94.795	Heterocephalus_glaber_male
ENSDORG00000002478	Upf2	100	80.653	ENSHCOG00000004025	UPF2	99	80.342	Hippocampus_comes
ENSDORG00000002478	Upf2	100	82.514	ENSIPUG00000015524	UPF2	100	82.891	Ictalurus_punctatus
ENSDORG00000002478	Upf2	100	98.425	ENSSTOG00000013075	UPF2	100	98.425	Ictidomys_tridecemlineatus
ENSDORG00000002478	Upf2	100	96.929	ENSJJAG00000004913	Upf2	100	96.929	Jaculus_jaculus
ENSDORG00000002478	Upf2	99	82.530	ENSKMAG00000001071	UPF2	99	82.488	Kryptolebias_marmoratus
ENSDORG00000002478	Upf2	80	82.515	ENSLBEG00000000728	-	93	82.515	Labrus_bergylta
ENSDORG00000002478	Upf2	100	82.828	ENSLBEG00000016394	-	99	82.646	Labrus_bergylta
ENSDORG00000002478	Upf2	99	79.529	ENSLACG00000015945	UPF2	100	79.765	Latimeria_chalumnae
ENSDORG00000002478	Upf2	99	85.500	ENSLOCG00000015698	UPF2	100	85.894	Lepisosteus_oculatus
ENSDORG00000002478	Upf2	100	97.091	ENSMFAG00000043865	UPF2	100	97.091	Macaca_fascicularis
ENSDORG00000002478	Upf2	100	97.091	ENSMMUG00000008241	UPF2	100	97.091	Macaca_mulatta
ENSDORG00000002478	Upf2	81	96.780	ENSMNEG00000008062	UPF2	100	96.780	Macaca_nemestrina
ENSDORG00000002478	Upf2	99	94.053	ENSMLEG00000036120	UPF2	100	97.585	Mandrillus_leucophaeus
ENSDORG00000002478	Upf2	100	82.271	ENSMAMG00000018276	UPF2	100	82.321	Mastacembelus_armatus
ENSDORG00000002478	Upf2	100	80.889	ENSMZEG00005021595	UPF2	100	82.683	Maylandia_zebra
ENSDORG00000002478	Upf2	99	91.817	ENSMGAG00000004573	UPF2	99	92.290	Meleagris_gallopavo
ENSDORG00000002478	Upf2	100	95.827	ENSMAUG00000016512	Upf2	100	95.827	Mesocricetus_auratus
ENSDORG00000002478	Upf2	95	97.723	ENSMICG00000001716	UPF2	99	97.723	Microcebus_murinus
ENSDORG00000002478	Upf2	100	97.323	ENSMOCG00000008263	Upf2	100	97.323	Microtus_ochrogaster
ENSDORG00000002478	Upf2	99	80.375	ENSMMOG00000006528	UPF2	100	79.421	Mola_mola
ENSDORG00000002478	Upf2	100	94.493	ENSMODG00000016794	UPF2	100	94.965	Monodelphis_domestica
ENSDORG00000002478	Upf2	99	81.939	ENSMALG00000002663	UPF2	100	82.224	Monopterus_albus
ENSDORG00000002478	Upf2	100	97.638	MGP_CAROLIEiJ_G0023157	Upf2	100	98.077	Mus_caroli
ENSDORG00000002478	Upf2	100	97.480	ENSMUSG00000043241	Upf2	100	97.480	Mus_musculus
ENSDORG00000002478	Upf2	100	97.402	MGP_PahariEiJ_G0019217	Upf2	100	97.402	Mus_pahari
ENSDORG00000002478	Upf2	100	97.717	MGP_SPRETEiJ_G0024075	Upf2	100	97.717	Mus_spretus
ENSDORG00000002478	Upf2	100	97.482	ENSMPUG00000001064	UPF2	100	97.482	Mustela_putorius_furo
ENSDORG00000002478	Upf2	99	97.251	ENSMLUG00000000228	UPF2	100	97.251	Myotis_lucifugus
ENSDORG00000002478	Upf2	100	80.967	ENSNBRG00000013629	UPF2	100	82.761	Neolamprologus_brichardi
ENSDORG00000002478	Upf2	100	96.934	ENSNLEG00000012058	UPF2	100	96.934	Nomascus_leucogenys
ENSDORG00000002478	Upf2	52	96.923	ENSMEUG00000002180	-	59	96.923	Notamacropus_eugenii
ENSDORG00000002478	Upf2	82	99.296	ENSOPRG00000006801	-	82	99.296	Ochotona_princeps
ENSDORG00000002478	Upf2	100	97.718	ENSODEG00000001290	UPF2	100	97.718	Octodon_degus
ENSDORG00000002478	Upf2	100	80.889	ENSONIG00000017991	UPF2	100	82.683	Oreochromis_niloticus
ENSDORG00000002478	Upf2	99	96.787	ENSOCUG00000006230	UPF2	100	96.787	Oryctolagus_cuniculus
ENSDORG00000002478	Upf2	100	80.856	ENSORLG00000017189	UPF2	100	81.669	Oryzias_latipes
ENSDORG00000002478	Upf2	100	80.856	ENSORLG00020005969	UPF2	100	81.669	Oryzias_latipes_hni
ENSDORG00000002478	Upf2	100	80.856	ENSORLG00015005713	UPF2	100	81.669	Oryzias_latipes_hsok
ENSDORG00000002478	Upf2	99	77.535	ENSOMEG00000023420	UPF2	98	78.890	Oryzias_melastigma
ENSDORG00000002478	Upf2	100	97.325	ENSOGAG00000005796	UPF2	100	97.325	Otolemur_garnettii
ENSDORG00000002478	Upf2	100	97.800	ENSOARG00000014587	UPF2	100	97.800	Ovis_aries
ENSDORG00000002478	Upf2	99	93.192	ENSPPAG00000037953	UPF2	100	93.932	Pan_paniscus
ENSDORG00000002478	Upf2	100	97.482	ENSPPRG00000000690	UPF2	100	97.482	Panthera_pardus
ENSDORG00000002478	Upf2	100	97.482	ENSPTIG00000008867	UPF2	100	97.482	Panthera_tigris_altaica
ENSDORG00000002478	Upf2	100	96.934	ENSPTRG00000002291	UPF2	100	96.934	Pan_troglodytes
ENSDORG00000002478	Upf2	100	97.091	ENSPANG00000023399	UPF2	100	97.091	Papio_anubis
ENSDORG00000002478	Upf2	100	79.407	ENSPKIG00000025502	UPF2	100	80.577	Paramormyrops_kingsleyae
ENSDORG00000002478	Upf2	59	91.899	ENSPSIG00000015158	UPF2	95	91.899	Pelodiscus_sinensis
ENSDORG00000002478	Upf2	99	79.811	ENSPMGG00000005259	UPF2	100	80.754	Periophthalmus_magnuspinnatus
ENSDORG00000002478	Upf2	93	97.376	ENSPEMG00000015731	Upf2	99	97.376	Peromyscus_maniculatus_bairdii
ENSDORG00000002478	Upf2	100	94.020	ENSPCIG00000006656	UPF2	100	94.493	Phascolarctos_cinereus
ENSDORG00000002478	Upf2	100	79.485	ENSPFOG00000017118	UPF2	100	81.591	Poecilia_formosa
ENSDORG00000002478	Upf2	100	79.439	ENSPLAG00000005094	UPF2	100	81.591	Poecilia_latipinna
ENSDORG00000002478	Upf2	100	79.485	ENSPMEG00000017009	UPF2	100	81.591	Poecilia_mexicana
ENSDORG00000002478	Upf2	99	79.405	ENSPREG00000021880	UPF2	100	81.754	Poecilia_reticulata
ENSDORG00000002478	Upf2	66	98.086	ENSPPYG00000002089	-	100	98.086	Pongo_abelii
ENSDORG00000002478	Upf2	100	83.320	ENSPCAG00000000684	UPF2	100	83.084	Procavia_capensis
ENSDORG00000002478	Upf2	99	94.716	ENSPCOG00000021656	UPF2	100	94.795	Propithecus_coquereli
ENSDORG00000002478	Upf2	100	89.858	ENSPVAG00000017286	UPF2	100	89.701	Pteropus_vampyrus
ENSDORG00000002478	Upf2	99	78.516	ENSPNYG00000017096	UPF2	100	80.312	Pundamilia_nyererei
ENSDORG00000002478	Upf2	100	83.841	ENSPNAG00000009357	UPF2	100	84.153	Pygocentrus_nattereri
ENSDORG00000002478	Upf2	99	91.752	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSDORG00000002478	Upf2	99	96.215	ENSRBIG00000037780	UPF2	100	96.215	Rhinopithecus_bieti
ENSDORG00000002478	Upf2	100	97.168	ENSRROG00000043547	UPF2	100	97.168	Rhinopithecus_roxellana
ENSDORG00000002478	Upf2	100	96.853	ENSSBOG00000020012	UPF2	100	96.853	Saimiri_boliviensis_boliviensis
ENSDORG00000002478	Upf2	100	80.670	ENSSFOG00015023788	upf2	100	82.541	Scleropages_formosus
ENSDORG00000002478	Upf2	90	82.480	ENSSMAG00000007637	UPF2	100	78.837	Scophthalmus_maximus
ENSDORG00000002478	Upf2	100	82.683	ENSSDUG00000017244	UPF2	99	82.683	Seriola_dumerili
ENSDORG00000002478	Upf2	99	81.113	ENSSLDG00000016866	UPF2	82	84.366	Seriola_lalandi_dorsalis
ENSDORG00000002478	Upf2	100	95.358	ENSSARG00000008615	UPF2	100	95.043	Sorex_araneus
ENSDORG00000002478	Upf2	99	89.528	ENSSPUG00000014544	UPF2	99	89.134	Sphenodon_punctatus
ENSDORG00000002478	Upf2	68	97.929	ENSSSCG00000011117	-	100	97.929	Sus_scrofa
ENSDORG00000002478	Upf2	99	92.823	ENSTGUG00000002163	-	100	92.744	Taeniopygia_guttata
ENSDORG00000002478	Upf2	100	82.165	ENSTRUG00000007519	UPF2	99	82.137	Takifugu_rubripes
ENSDORG00000002478	Upf2	100	79.627	ENSTNIG00000004453	UPF2	100	79.283	Tetraodon_nigroviridis
ENSDORG00000002478	Upf2	93	90.508	ENSTBEG00000012679	UPF2	93	90.508	Tupaia_belangeri
ENSDORG00000002478	Upf2	100	97.561	ENSTTRG00000016388	UPF2	100	97.561	Tursiops_truncatus
ENSDORG00000002478	Upf2	95	99.306	ENSUAMG00000023560	UPF2	99	99.306	Ursus_americanus
ENSDORG00000002478	Upf2	100	97.797	ENSUMAG00000012953	UPF2	95	97.797	Ursus_maritimus
ENSDORG00000002478	Upf2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSDORG00000002478	Upf2	100	97.876	ENSVVUG00000006166	UPF2	100	97.876	Vulpes_vulpes
ENSDORG00000002478	Upf2	100	82.385	ENSXETG00000033103	UPF2	100	81.484	Xenopus_tropicalis
ENSDORG00000002478	Upf2	99	78.906	ENSXCOG00000011604	UPF2	100	81.250	Xiphophorus_couchianus
ENSDORG00000002478	Upf2	100	79.329	ENSXMAG00000017209	UPF2	100	81.279	Xiphophorus_maculatus