EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSDORG00000002950 (Gene tree)
Gene ID
105987375
Gene Symbol
Cpsf6
Alias
4733401N12Rik|CFIM68|HPBRII-4|HPBRII-7
Full Name
cleavage and polyadenylation specific factor 6
Gene Type
protein_coding
Species
Dipodomys_ordii
Status
putative
Strand
Plus strand
Length
9619 bases
Position
chrKN672349.1:10735008-10744626
Accession
105987375
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDORP00000016964RRM_1PF00076.227.2e-0711
ENSDORP00000002772RRM_1PF00076.227.7e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDORT00000033995-1632-ENSDORP00000016964543 (aa)-UPI000BACFA54
ENSDORT00000002950-1707XM_013018619ENSDORP00000002772568 (aa)XP_012874073UPI0001771DAF
Gene Model
Click here to download ENSDORG00000002950's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000002950's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDORG00000002950Cpsf67452.308ENSDORG00000000998-7359.429
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDORG00000002950Cpsf66757.246ENSG00000149532CPSF79057.471Homo_sapiens
ENSDORG00000002950Cpsf6100100.000ENSG00000111605CPSF697100.000Homo_sapiens
ENSDORG00000002950Cpsf610099.824ENSAMEG00000011781CPSF69799.824Ailuropoda_melanoleuca
ENSDORG00000002950Cpsf66140.212ENSAOCG00000012357CPSF76842.593Amphiprion_ocellaris
ENSDORG00000002950Cpsf65950.249ENSANAG00000024635CPSF76853.039Aotus_nancymaae
ENSDORG00000002950Cpsf6100100.000ENSANAG00000019240CPSF699100.000Aotus_nancymaae
ENSDORG00000002950Cpsf65990.419ENSAMXG00000016745CPSF67090.303Astyanax_mexicanus
ENSDORG00000002950Cpsf65955.385ENSBTAG00000015263CPSF76758.286Bos_taurus
ENSDORG00000002950Cpsf610099.824ENSBTAG00000007323CPSF69799.824Bos_taurus
ENSDORG00000002950Cpsf67448.901ENSCJAG00000019282CPSF77957.714Callithrix_jacchus
ENSDORG00000002950Cpsf610099.824ENSCJAG00000001798CPSF69799.824Callithrix_jacchus
ENSDORG00000002950Cpsf65955.385ENSCAFG00000016152CPSF76758.857Canis_familiaris
ENSDORG00000002950Cpsf6100100.000ENSCAFG00000000424CPSF699100.000Canis_familiaris
ENSDORG00000002950Cpsf6100100.000ENSCAFG00020016950CPSF697100.000Canis_lupus_dingo
ENSDORG00000002950Cpsf65955.385ENSCAFG00020012753CPSF76758.857Canis_lupus_dingo
ENSDORG00000002950Cpsf610099.824ENSCHIG00000010792CPSF69799.824Capra_hircus
ENSDORG00000002950Cpsf65955.385ENSCHIG00000014655CPSF76758.286Capra_hircus
ENSDORG00000002950Cpsf6100100.000ENSTSYG00000008591CPSF699100.000Carlito_syrichta
ENSDORG00000002950Cpsf65955.385ENSTSYG00000010138-6758.857Carlito_syrichta
ENSDORG00000002950Cpsf65955.385ENSCAPG00000006384CPSF77058.857Cavia_aperea
ENSDORG00000002950Cpsf65955.385ENSCPOG00000009980CPSF76758.857Cavia_porcellus
ENSDORG00000002950Cpsf610099.648ENSCPOG00000015201CPSF69799.648Cavia_porcellus
ENSDORG00000002950Cpsf610099.824ENSCCAG00000028149CPSF69799.824Cebus_capucinus
ENSDORG00000002950Cpsf65954.872ENSCCAG00000032367CPSF76758.286Cebus_capucinus
ENSDORG00000002950Cpsf66254.872ENSCATG00000042801CPSF77358.286Cercocebus_atys
ENSDORG00000002950Cpsf6100100.000ENSCATG00000039288CPSF697100.000Cercocebus_atys
ENSDORG00000002950Cpsf65955.385ENSCLAG00000003174CPSF76758.286Chinchilla_lanigera
ENSDORG00000002950Cpsf610099.648ENSCLAG00000010149CPSF610099.648Chinchilla_lanigera
ENSDORG00000002950Cpsf6100100.000ENSCSAG00000004232CPSF697100.000Chlorocebus_sabaeus
ENSDORG00000002950Cpsf66254.872ENSCSAG00000006414CPSF77358.286Chlorocebus_sabaeus
ENSDORG00000002950Cpsf69897.744ENSCPBG00000013322CPSF69697.744Chrysemys_picta_bellii
ENSDORG00000002950Cpsf65459.441ENSCSAVG00000000161-5263.780Ciona_savignyi
ENSDORG00000002950Cpsf6100100.000ENSCANG00000037294CPSF6100100.000Colobus_angolensis_palliatus
ENSDORG00000002950Cpsf6100100.000ENSCGRG00001018082Cpsf69899.439Cricetulus_griseus_chok1gshd
ENSDORG00000002950Cpsf65955.897ENSCGRG00001020382Cpsf76759.429Cricetulus_griseus_chok1gshd
ENSDORG00000002950Cpsf66951.152ENSCGRG00000017954Cpsf77359.429Cricetulus_griseus_crigri
ENSDORG00000002950Cpsf6100100.000ENSCGRG00000016909Cpsf6100100.000Cricetulus_griseus_crigri
ENSDORG00000002950Cpsf65243.299ENSCSEG00000001956CPSF75747.552Cynoglossus_semilaevis
ENSDORG00000002950Cpsf66436.842ENSCVAG00000007392CPSF76644.521Cyprinodon_variegatus
ENSDORG00000002950Cpsf69899.624ENSDNOG00000015292CPSF69699.624Dasypus_novemcinctus
ENSDORG00000002950Cpsf67449.451ENSDNOG00000018517CPSF77958.286Dasypus_novemcinctus
ENSDORG00000002950Cpsf66252.083ENSETEG00000003765CPSF76757.310Echinops_telfairi
ENSDORG00000002950Cpsf610092.606ENSETEG00000002097CPSF69792.606Echinops_telfairi
ENSDORG00000002950Cpsf65955.385ENSEASG00005008196CPSF76758.857Equus_asinus_asinus
ENSDORG00000002950Cpsf6100100.000ENSEASG00005008066CPSF697100.000Equus_asinus_asinus
ENSDORG00000002950Cpsf6100100.000ENSECAG00000015988CPSF697100.000Equus_caballus
ENSDORG00000002950Cpsf67449.451ENSECAG00000018521CPSF78658.286Equus_caballus
ENSDORG00000002950Cpsf610099.296ENSEEUG00000015039CPSF610099.296Erinaceus_europaeus
ENSDORG00000002950Cpsf610099.824ENSFCAG00000002855CPSF69799.824Felis_catus
ENSDORG00000002950Cpsf67449.451ENSFCAG00000013677CPSF78658.286Felis_catus
ENSDORG00000002950Cpsf66156.452ENSFALG00000011927CPSF77158.140Ficedula_albicollis
ENSDORG00000002950Cpsf69898.308ENSFALG00000010157CPSF69998.308Ficedula_albicollis
ENSDORG00000002950Cpsf69338.964ENSFDAG00000003919CPSF76756.000Fukomys_damarensis
ENSDORG00000002950Cpsf610099.472ENSFDAG00000002281CPSF69898.521Fukomys_damarensis
ENSDORG00000002950Cpsf65371.053ENSFHEG00000019693cpsf65070.548Fundulus_heteroclitus
ENSDORG00000002950Cpsf65091.736ENSGMOG00000012951cpsf65093.388Gadus_morhua
ENSDORG00000002950Cpsf65955.959ENSGALG00000040962CPSF75958.960Gallus_gallus
ENSDORG00000002950Cpsf69897.744ENSGAGG00000010228CPSF69697.744Gopherus_agassizii
ENSDORG00000002950Cpsf610099.824ENSGGOG00000008211CPSF69799.824Gorilla_gorilla
ENSDORG00000002950Cpsf66255.897ENSHGLG00000019090-7358.857Heterocephalus_glaber_female
ENSDORG00000002950Cpsf610099.472ENSHGLG00000000792CPSF69799.472Heterocephalus_glaber_female
ENSDORG00000002950Cpsf66552.308ENSHGLG00100013933-7456.000Heterocephalus_glaber_male
ENSDORG00000002950Cpsf610099.472ENSHGLG00100013861CPSF610099.624Heterocephalus_glaber_male
ENSDORG00000002950Cpsf65955.385ENSSTOG00000007708CPSF76758.857Ictidomys_tridecemlineatus
ENSDORG00000002950Cpsf6100100.000ENSSTOG00000014133CPSF610099.812Ictidomys_tridecemlineatus
ENSDORG00000002950Cpsf66255.385ENSJJAG00000019390Cpsf77358.857Jaculus_jaculus
ENSDORG00000002950Cpsf6100100.000ENSJJAG00000014647Cpsf6100100.000Jaculus_jaculus
ENSDORG00000002950Cpsf68040.331ENSLBEG00000000947CPSF78032.850Labrus_bergylta
ENSDORG00000002950Cpsf66543.030ENSLACG00000005542CPSF77143.030Latimeria_chalumnae
ENSDORG00000002950Cpsf66495.294ENSLOCG00000016190cpsf66395.294Lepisosteus_oculatus
ENSDORG00000002950Cpsf66252.308ENSLAFG00000032084CPSF76759.429Loxodonta_africana
ENSDORG00000002950Cpsf69899.812ENSLAFG00000030413CPSF69699.812Loxodonta_africana
ENSDORG00000002950Cpsf65954.872ENSMFAG00000001401CPSF76858.286Macaca_fascicularis
ENSDORG00000002950Cpsf610099.824ENSMFAG00000045318CPSF69799.824Macaca_fascicularis
ENSDORG00000002950Cpsf610099.824ENSMMUG00000002921CPSF69799.824Macaca_mulatta
ENSDORG00000002950Cpsf66254.872ENSMMUG00000015280CPSF77358.286Macaca_mulatta
ENSDORG00000002950Cpsf66254.872ENSMNEG00000029585CPSF77358.286Macaca_nemestrina
ENSDORG00000002950Cpsf610099.824ENSMNEG00000036311CPSF69799.824Macaca_nemestrina
ENSDORG00000002950Cpsf6100100.000ENSMLEG00000003957CPSF6100100.000Mandrillus_leucophaeus
ENSDORG00000002950Cpsf65954.872ENSMLEG00000031269CPSF76858.286Mandrillus_leucophaeus
ENSDORG00000002950Cpsf69541.123ENSMGAG00000004876CPSF75961.446Meleagris_gallopavo
ENSDORG00000002950Cpsf610093.761ENSMGAG00000010552CPSF69993.761Meleagris_gallopavo
ENSDORG00000002950Cpsf65955.385ENSMAUG00000013020Cpsf76758.857Mesocricetus_auratus
ENSDORG00000002950Cpsf6100100.000ENSMAUG00000013240Cpsf697100.000Mesocricetus_auratus
ENSDORG00000002950Cpsf65955.385ENSMICG00000013788CPSF76758.857Microcebus_murinus
ENSDORG00000002950Cpsf6100100.000ENSMICG00000007385-97100.000Microcebus_murinus
ENSDORG00000002950Cpsf6100100.000ENSMOCG00000013982Cpsf697100.000Microtus_ochrogaster
ENSDORG00000002950Cpsf65955.385ENSMOCG00000000072Cpsf76758.857Microtus_ochrogaster
ENSDORG00000002950Cpsf69899.060ENSMODG00000007123CPSF69699.060Monodelphis_domestica
ENSDORG00000002950Cpsf66252.792ENSMODG00000020364CPSF76857.386Monodelphis_domestica
ENSDORG00000002950Cpsf67289.175ENSMALG00000014908cpsf67491.525Monopterus_albus
ENSDORG00000002950Cpsf65955.385MGP_CAROLIEiJ_G0022690Cpsf76758.857Mus_caroli
ENSDORG00000002950Cpsf6100100.000MGP_CAROLIEiJ_G0015834Cpsf697100.000Mus_caroli
ENSDORG00000002950Cpsf65955.385ENSMUSG00000034820Cpsf76758.857Mus_musculus
ENSDORG00000002950Cpsf610099.648ENSMUSG00000055531Cpsf69799.648Mus_musculus
ENSDORG00000002950Cpsf68299.668MGP_PahariEiJ_G0031253Cpsf68399.289Mus_pahari
ENSDORG00000002950Cpsf65955.385MGP_PahariEiJ_G0014184Cpsf76758.857Mus_pahari
ENSDORG00000002950Cpsf610099.648MGP_SPRETEiJ_G0016657Cpsf69799.648Mus_spretus
ENSDORG00000002950Cpsf65955.385MGP_SPRETEiJ_G0023604Cpsf76758.857Mus_spretus
ENSDORG00000002950Cpsf69996.310ENSMPUG00000017502CPSF69996.310Mustela_putorius_furo
ENSDORG00000002950Cpsf65954.359ENSMPUG00000014163CPSF76757.714Mustela_putorius_furo
ENSDORG00000002950Cpsf69996.673ENSMLUG00000004172-9996.673Myotis_lucifugus
ENSDORG00000002950Cpsf66255.385ENSMLUG00000013278CPSF77358.857Myotis_lucifugus
ENSDORG00000002950Cpsf67694.928ENSMLUG00000028728-8894.898Myotis_lucifugus
ENSDORG00000002950Cpsf67084.783ENSMLUG00000023960-7684.324Myotis_lucifugus
ENSDORG00000002950Cpsf6100100.000ENSNGAG00000015901Cpsf697100.000Nannospalax_galili
ENSDORG00000002950Cpsf65955.385ENSNGAG00000005031Cpsf76758.857Nannospalax_galili
ENSDORG00000002950Cpsf65954.872ENSNLEG00000002529CPSF76158.286Nomascus_leucogenys
ENSDORG00000002950Cpsf610099.649ENSNLEG00000003798CPSF69799.649Nomascus_leucogenys
ENSDORG00000002950Cpsf66254.082ENSMEUG00000002261CPSF76758.721Notamacropus_eugenii
ENSDORG00000002950Cpsf610096.479ENSMEUG00000015041CPSF69696.479Notamacropus_eugenii
ENSDORG00000002950Cpsf610099.472ENSOPRG00000005199CPSF610099.472Ochotona_princeps
ENSDORG00000002950Cpsf69897.932ENSODEG00000018399-9697.932Octodon_degus
ENSDORG00000002950Cpsf67799.194ENSODEG00000004418-9098.795Octodon_degus
ENSDORG00000002950Cpsf67682.443ENSODEG00000007109-6680.576Octodon_degus
ENSDORG00000002950Cpsf65953.030ENSODEG00000002610CPSF76755.618Octodon_degus
ENSDORG00000002950Cpsf67484.231ENSONIG00000011702cpsf69180.716Oreochromis_niloticus
ENSDORG00000002950Cpsf69281.238ENSOANG00000005944CPSF65087.121Ornithorhynchus_anatinus
ENSDORG00000002950Cpsf6100100.000ENSOCUG00000013505CPSF697100.000Oryctolagus_cuniculus
ENSDORG00000002950Cpsf69739.746ENSOCUG00000024726CPSF76758.286Oryctolagus_cuniculus
ENSDORG00000002950Cpsf69282.016ENSORLG00000013893cpsf69171.947Oryzias_latipes
ENSDORG00000002950Cpsf67335.193ENSORLG00000006495CPSF75549.558Oryzias_latipes
ENSDORG00000002950Cpsf69282.016ENSORLG00020016593cpsf69171.947Oryzias_latipes_hni
ENSDORG00000002950Cpsf67235.345ENSORLG00020012657CPSF75549.558Oryzias_latipes_hni
ENSDORG00000002950Cpsf69282.016ENSORLG00015015558cpsf69171.947Oryzias_latipes_hsok
ENSDORG00000002950Cpsf67238.028ENSOMEG00000000539CPSF77037.267Oryzias_melastigma
ENSDORG00000002950Cpsf65955.385ENSOGAG00000027958CPSF76258.857Otolemur_garnettii
ENSDORG00000002950Cpsf69897.556ENSOGAG00000031988CPSF69997.556Otolemur_garnettii
ENSDORG00000002950Cpsf65955.385ENSOARG00000012937CPSF76158.286Ovis_aries
ENSDORG00000002950Cpsf610099.649ENSOARG00000020532CPSF610099.813Ovis_aries
ENSDORG00000002950Cpsf610097.188ENSPPAG00000005301CPSF69897.188Pan_paniscus
ENSDORG00000002950Cpsf65954.872ENSPPAG00000028232CPSF76958.286Pan_paniscus
ENSDORG00000002950Cpsf65955.385ENSPPRG00000008538CPSF76758.857Panthera_pardus
ENSDORG00000002950Cpsf610099.824ENSPPRG00000021620CPSF69799.824Panthera_pardus
ENSDORG00000002950Cpsf65955.385ENSPTIG00000021699CPSF76758.857Panthera_tigris_altaica
ENSDORG00000002950Cpsf69499.813ENSPTIG00000004079CPSF610099.813Panthera_tigris_altaica
ENSDORG00000002950Cpsf65954.872ENSPTRG00000003742CPSF76958.286Pan_troglodytes
ENSDORG00000002950Cpsf610099.824ENSPTRG00000005205CPSF69799.824Pan_troglodytes
ENSDORG00000002950Cpsf6100100.000ENSPANG00000011641CPSF697100.000Papio_anubis
ENSDORG00000002950Cpsf65954.872ENSPANG00000006037CPSF76858.286Papio_anubis
ENSDORG00000002950Cpsf65848.023ENSPKIG00000018054CPSF77544.681Paramormyrops_kingsleyae
ENSDORG00000002950Cpsf69281.511ENSPKIG00000003081-9181.474Paramormyrops_kingsleyae
ENSDORG00000002950Cpsf65894.512ENSPSIG00000016360CPSF67694.512Pelodiscus_sinensis
ENSDORG00000002950Cpsf66255.385ENSPEMG00000012648Cpsf77358.857Peromyscus_maniculatus_bairdii
ENSDORG00000002950Cpsf610099.824ENSPEMG00000007973Cpsf610099.824Peromyscus_maniculatus_bairdii
ENSDORG00000002950Cpsf610099.296ENSPCIG00000019063CPSF69799.296Phascolarctos_cinereus
ENSDORG00000002950Cpsf66252.736ENSPCIG00000002551CPSF77956.284Phascolarctos_cinereus
ENSDORG00000002950Cpsf68284.706ENSPFOG00000006990cpsf65381.853Poecilia_formosa
ENSDORG00000002950Cpsf65372.697ENSPMEG00000001353cpsf65069.333Poecilia_mexicana
ENSDORG00000002950Cpsf65954.872ENSPPYG00000003188CPSF76758.286Pongo_abelii
ENSDORG00000002950Cpsf69899.624ENSPPYG00000004756CPSF69699.624Pongo_abelii
ENSDORG00000002950Cpsf6100100.000ENSPCAG00000011574CPSF697100.000Procavia_capensis
ENSDORG00000002950Cpsf65955.385ENSPCOG00000011976CPSF76758.857Propithecus_coquereli
ENSDORG00000002950Cpsf610099.649ENSPCOG00000024384CPSF69799.649Propithecus_coquereli
ENSDORG00000002950Cpsf65955.385ENSPVAG00000010675CPSF76758.857Pteropus_vampyrus
ENSDORG00000002950Cpsf610099.472ENSPVAG00000015753CPSF69799.472Pteropus_vampyrus
ENSDORG00000002950Cpsf65546.497ENSPNAG00000015073CPSF76847.879Pygocentrus_nattereri
ENSDORG00000002950Cpsf68451.282ENSRNOG00000020668Cpsf77358.721Rattus_norvegicus
ENSDORG00000002950Cpsf69899.624ENSRNOG00000005927Cpsf69699.624Rattus_norvegicus
ENSDORG00000002950Cpsf67448.901ENSRBIG00000031429CPSF78657.714Rhinopithecus_bieti
ENSDORG00000002950Cpsf610099.649ENSRBIG00000042827CPSF69799.649Rhinopithecus_bieti
ENSDORG00000002950Cpsf65954.872ENSRROG00000045009CPSF76758.286Rhinopithecus_roxellana
ENSDORG00000002950Cpsf610099.824ENSRROG00000042758CPSF69799.824Rhinopithecus_roxellana
ENSDORG00000002950Cpsf65954.872ENSSBOG00000018431CPSF76758.286Saimiri_boliviensis_boliviensis
ENSDORG00000002950Cpsf610099.824ENSSBOG00000010652CPSF6100100.000Saimiri_boliviensis_boliviensis
ENSDORG00000002950Cpsf69395.266ENSSHAG00000006635CPSF69495.069Sarcophilus_harrisii
ENSDORG00000002950Cpsf66251.269ENSSHAG00000011964CPSF76759.302Sarcophilus_harrisii
ENSDORG00000002950Cpsf69278.968ENSSFOG00015001688CPSF67980.915Scleropages_formosus
ENSDORG00000002950Cpsf67141.176ENSSFOG00015010288cpsf77340.659Scleropages_formosus
ENSDORG00000002950Cpsf69282.937ENSSFOG00015015803CPSF69180.716Scleropages_formosus
ENSDORG00000002950Cpsf69299.526ENSSARG00000006743CPSF69192.737Sorex_araneus
ENSDORG00000002950Cpsf65956.250ENSSPUG00000019344CPSF76956.977Sphenodon_punctatus
ENSDORG00000002950Cpsf69291.353ENSSPUG00000001238CPSF69792.540Sphenodon_punctatus
ENSDORG00000002950Cpsf67449.451ENSSSCG00000013083CPSF77958.286Sus_scrofa
ENSDORG00000002950Cpsf6100100.000ENSSSCG00000038031CPSF6100100.000Sus_scrofa
ENSDORG00000002950Cpsf65954.444ENSTGUG00000006513CPSF76756.322Taeniopygia_guttata
ENSDORG00000002950Cpsf66251.282ENSTTRG00000011085CPSF77058.857Tursiops_truncatus
ENSDORG00000002950Cpsf65955.385ENSUAMG00000017809CPSF76758.857Ursus_americanus
ENSDORG00000002950Cpsf69299.800ENSUAMG00000023492CPSF610099.800Ursus_americanus
ENSDORG00000002950Cpsf694100.000ENSUMAG00000020779CPSF6100100.000Ursus_maritimus
ENSDORG00000002950Cpsf66255.385ENSUMAG00000011825CPSF77358.857Ursus_maritimus
ENSDORG00000002950Cpsf6100100.000ENSVPAG00000008469CPSF6100100.000Vicugna_pacos
ENSDORG00000002950Cpsf694100.000ENSVVUG00000010156-100100.000Vulpes_vulpes
ENSDORG00000002950Cpsf67449.451ENSVVUG00000004939CPSF77958.286Vulpes_vulpes
ENSDORG00000002950Cpsf69738.929ENSXETG00000006715cpsf76253.571Xenopus_tropicalis

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