EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000003466 (Gene tree)
Gene ID: 105995675
Gene Symbol: Smarca5
Alias: 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 27499 bases
Position: chrKN672465.1:3302459-3329957
Accession: 105995675
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000017114	ResIII	PF04851.15	4.1e-11	1	1
ENSDORP00000003245	ResIII	PF04851.15	6.6e-11	1	1
ENSDORP00000027157	ResIII	PF04851.15	7e-11	1	1
ENSDORP00000027157	DEAD	PF00270.29	3.2e-06	1	1
ENSDORP00000017114	DEAD	PF00270.29	3.5e-06	1	1
ENSDORP00000003245	DEAD	PF00270.29	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000003467	-	2880	XM_013029500	ENSDORP00000003245	959 (aa)	XP_012884954	UPI000BAD226A
ENSDORT00000033665	-	2712	-	ENSDORP00000027157	903 (aa)	-	UPI000BAD0CEE
ENSDORT00000031557	-	2811	-	ENSDORP00000017114	936 (aa)	-	UPI000BAD1659

Gene Model

Click here to download ENSDORG00000003466's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000003466's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000003466	Smarca5	55	42.735	ENSDORG00000013555	Chd1l	65	35.714
ENSDORG00000003466	Smarca5	97	79.036	ENSDORG00000009270	Smarca1	89	79.763

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000003466	Smarca5	97	90.612	ENSG00000153147	SMARCA5	99	82.342	Homo_sapiens
ENSDORG00000003466	Smarca5	97	90.928	ENSAMEG00000009585	SMARCA5	90	90.928	Ailuropoda_melanoleuca
ENSDORG00000003466	Smarca5	97	88.843	ENSAPLG00000009206	SMARCA5	98	88.843	Anas_platyrhynchos
ENSDORG00000003466	Smarca5	97	88.830	ENSACAG00000003038	SMARCA5	92	88.830	Anolis_carolinensis
ENSDORG00000003466	Smarca5	97	90.612	ENSANAG00000019345	SMARCA5	95	90.612	Aotus_nancymaae
ENSDORG00000003466	Smarca5	97	90.928	ENSBTAG00000003399	SMARCA5	90	90.928	Bos_taurus
ENSDORG00000003466	Smarca5	97	90.717	ENSCJAG00000002735	SMARCA5	90	90.717	Callithrix_jacchus
ENSDORG00000003466	Smarca5	97	90.928	ENSCAFG00000007525	SMARCA5	90	90.928	Canis_familiaris
ENSDORG00000003466	Smarca5	97	90.776	ENSCAFG00020025641	SMARCA5	92	90.776	Canis_lupus_dingo
ENSDORG00000003466	Smarca5	97	90.928	ENSCHIG00000013730	-	90	90.928	Capra_hircus
ENSDORG00000003466	Smarca5	97	91.489	ENSCHIG00000016375	-	96	91.760	Capra_hircus
ENSDORG00000003466	Smarca5	97	90.823	ENSTSYG00000009954	SMARCA5	95	90.823	Carlito_syrichta
ENSDORG00000003466	Smarca5	98	89.408	ENSCAPG00000013747	SMARCA5	94	89.408	Cavia_aperea
ENSDORG00000003466	Smarca5	97	90.717	ENSCPOG00000002259	SMARCA5	90	90.717	Cavia_porcellus
ENSDORG00000003466	Smarca5	97	90.717	ENSCCAG00000027215	SMARCA5	95	90.717	Cebus_capucinus
ENSDORG00000003466	Smarca5	97	90.612	ENSCATG00000044917	SMARCA5	90	90.612	Cercocebus_atys
ENSDORG00000003466	Smarca5	97	90.823	ENSCLAG00000006153	SMARCA5	95	90.823	Chinchilla_lanigera
ENSDORG00000003466	Smarca5	97	90.612	ENSCSAG00000003448	SMARCA5	98	90.612	Chlorocebus_sabaeus
ENSDORG00000003466	Smarca5	86	96.154	ENSCHOG00000011724	SMARCA5	86	96.154	Choloepus_hoffmanni
ENSDORG00000003466	Smarca5	97	89.884	ENSCPBG00000027535	SMARCA5	91	89.884	Chrysemys_picta_bellii
ENSDORG00000003466	Smarca5	97	90.612	ENSCANG00000041629	SMARCA5	90	90.612	Colobus_angolensis_palliatus
ENSDORG00000003466	Smarca5	97	90.928	ENSCGRG00001012719	Smarca5	90	90.928	Cricetulus_griseus_chok1gshd
ENSDORG00000003466	Smarca5	97	90.928	ENSCGRG00000001417	Smarca5	94	90.928	Cricetulus_griseus_crigri
ENSDORG00000003466	Smarca5	97	87.869	ENSDNOG00000009158	SMARCA5	90	87.869	Dasypus_novemcinctus
ENSDORG00000003466	Smarca5	94	90.025	ENSEBUG00000014773	SMARCA5	88	89.639	Eptatretus_burgeri
ENSDORG00000003466	Smarca5	99	92.275	ENSEASG00005001866	SMARCA5	99	89.448	Equus_asinus_asinus
ENSDORG00000003466	Smarca5	97	90.928	ENSECAG00000002676	SMARCA5	90	90.928	Equus_caballus
ENSDORG00000003466	Smarca5	97	86.287	ENSEEUG00000013176	SMARCA5	95	86.287	Erinaceus_europaeus
ENSDORG00000003466	Smarca5	97	81.132	ENSELUG00000014653	SMARCA5	97	81.217	Esox_lucius
ENSDORG00000003466	Smarca5	97	90.928	ENSFCAG00000004544	SMARCA5	90	90.928	Felis_catus
ENSDORG00000003466	Smarca5	97	89.357	ENSFALG00000004987	SMARCA5	98	89.357	Ficedula_albicollis
ENSDORG00000003466	Smarca5	97	90.928	ENSFDAG00000021016	SMARCA5	95	90.928	Fukomys_damarensis
ENSDORG00000003466	Smarca5	97	81.770	ENSGMOG00000007519	SMARCA5	92	81.770	Gadus_morhua
ENSDORG00000003466	Smarca5	97	89.568	ENSGALG00000009913	SMARCA5	91	89.568	Gallus_gallus
ENSDORG00000003466	Smarca5	96	82.963	ENSGACG00000017238	SMARCA5	92	82.963	Gasterosteus_aculeatus
ENSDORG00000003466	Smarca5	97	89.989	ENSGAGG00000019882	SMARCA5	91	89.989	Gopherus_agassizii
ENSDORG00000003466	Smarca5	97	90.612	ENSGGOG00000012595	SMARCA5	95	90.612	Gorilla_gorilla
ENSDORG00000003466	Smarca5	97	90.823	ENSHGLG00000000816	-	90	90.823	Heterocephalus_glaber_female
ENSDORG00000003466	Smarca5	97	85.531	ENSHGLG00000000317	-	95	85.509	Heterocephalus_glaber_female
ENSDORG00000003466	Smarca5	97	90.823	ENSHGLG00100018421	-	95	90.823	Heterocephalus_glaber_male
ENSDORG00000003466	Smarca5	98	90.814	ENSSTOG00000010683	SMARCA5	91	90.814	Ictidomys_tridecemlineatus
ENSDORG00000003466	Smarca5	97	90.612	ENSJJAG00000014965	Smarca5	90	90.612	Jaculus_jaculus
ENSDORG00000003466	Smarca5	97	89.018	ENSLACG00000007091	SMARCA5	93	89.018	Latimeria_chalumnae
ENSDORG00000003466	Smarca5	97	85.005	ENSLOCG00000008966	SMARCA5	92	85.005	Lepisosteus_oculatus
ENSDORG00000003466	Smarca5	97	90.928	ENSLAFG00000007795	SMARCA5	90	90.928	Loxodonta_africana
ENSDORG00000003466	Smarca5	97	90.612	ENSMFAG00000043649	SMARCA5	90	90.612	Macaca_fascicularis
ENSDORG00000003466	Smarca5	98	90.407	ENSMMUG00000000829	SMARCA5	98	90.407	Macaca_mulatta
ENSDORG00000003466	Smarca5	97	90.612	ENSMNEG00000031916	SMARCA5	90	90.612	Macaca_nemestrina
ENSDORG00000003466	Smarca5	97	90.612	ENSMLEG00000042393	SMARCA5	90	90.612	Mandrillus_leucophaeus
ENSDORG00000003466	Smarca5	97	89.568	ENSMGAG00000003517	SMARCA5	97	96.845	Meleagris_gallopavo
ENSDORG00000003466	Smarca5	97	90.928	ENSMAUG00000015902	Smarca5	93	90.928	Mesocricetus_auratus
ENSDORG00000003466	Smarca5	97	90.823	ENSMICG00000003971	SMARCA5	95	89.203	Microcebus_murinus
ENSDORG00000003466	Smarca5	97	90.717	ENSMOCG00000016986	-	90	90.717	Microtus_ochrogaster
ENSDORG00000003466	Smarca5	97	90.506	ENSMODG00000000391	SMARCA5	90	90.506	Monodelphis_domestica
ENSDORG00000003466	Smarca5	97	90.823	ENSMUSG00000031715	Smarca5	90	90.823	Mus_musculus
ENSDORG00000003466	Smarca5	97	90.928	MGP_PahariEiJ_G0022862	Smarca5	90	90.928	Mus_pahari
ENSDORG00000003466	Smarca5	97	90.928	ENSMLUG00000000468	SMARCA5	90	90.928	Myotis_lucifugus
ENSDORG00000003466	Smarca5	97	90.928	ENSNGAG00000000441	Smarca5	90	90.928	Nannospalax_galili
ENSDORG00000003466	Smarca5	97	90.612	ENSNLEG00000005383	SMARCA5	90	90.612	Nomascus_leucogenys
ENSDORG00000003466	Smarca5	93	85.950	ENSMEUG00000001267	SMARCA5	94	85.950	Notamacropus_eugenii
ENSDORG00000003466	Smarca5	88	97.906	ENSOPRG00000014427	SMARCA5	86	97.906	Ochotona_princeps
ENSDORG00000003466	Smarca5	97	90.506	ENSOANG00000013921	SMARCA5	98	90.506	Ornithorhynchus_anatinus
ENSDORG00000003466	Smarca5	97	91.034	ENSOCUG00000013042	SMARCA5	98	91.034	Oryctolagus_cuniculus
ENSDORG00000003466	Smarca5	97	90.823	ENSOGAG00000009702	SMARCA5	90	90.823	Otolemur_garnettii
ENSDORG00000003466	Smarca5	97	90.928	ENSOARG00000010589	SMARCA5	90	90.928	Ovis_aries
ENSDORG00000003466	Smarca5	97	90.612	ENSPPAG00000028523	SMARCA5	95	90.612	Pan_paniscus
ENSDORG00000003466	Smarca5	96	87.328	ENSPPRG00000004925	SMARCA5	94	87.328	Panthera_pardus
ENSDORG00000003466	Smarca5	97	90.928	ENSPTIG00000020959	SMARCA5	91	90.928	Panthera_tigris_altaica
ENSDORG00000003466	Smarca5	97	90.612	ENSPTRG00000016472	SMARCA5	95	90.612	Pan_troglodytes
ENSDORG00000003466	Smarca5	97	90.612	ENSPANG00000001175	SMARCA5	90	90.612	Papio_anubis
ENSDORG00000003466	Smarca5	97	83.878	ENSPKIG00000015885	SMARCA5	98	83.878	Paramormyrops_kingsleyae
ENSDORG00000003466	Smarca5	97	83.562	ENSPKIG00000015699	SMARCA5	96	81.356	Paramormyrops_kingsleyae
ENSDORG00000003466	Smarca5	97	87.671	ENSPSIG00000004177	SMARCA5	95	87.671	Pelodiscus_sinensis
ENSDORG00000003466	Smarca5	96	82.581	ENSPMGG00000012316	SMARCA5	98	82.581	Periophthalmus_magnuspinnatus
ENSDORG00000003466	Smarca5	97	90.928	ENSPEMG00000008060	Smarca5	93	90.928	Peromyscus_maniculatus_bairdii
ENSDORG00000003466	Smarca5	96	64.632	ENSPMAG00000006011	SMARCA5	76	89.796	Petromyzon_marinus
ENSDORG00000003466	Smarca5	62	76.115	ENSPMAG00000008026	SMARCA5	87	87.850	Petromyzon_marinus
ENSDORG00000003466	Smarca5	97	90.506	ENSPCIG00000003926	SMARCA5	91	89.760	Phascolarctos_cinereus
ENSDORG00000003466	Smarca5	97	90.612	ENSPPYG00000015091	SMARCA5	90	90.612	Pongo_abelii
ENSDORG00000003466	Smarca5	85	82.000	ENSPCAG00000014230	SMARCA5	83	82.000	Procavia_capensis
ENSDORG00000003466	Smarca5	97	87.764	ENSPCOG00000026744	SMARCA5	95	87.158	Propithecus_coquereli
ENSDORG00000003466	Smarca5	97	90.823	ENSPVAG00000006482	SMARCA5	90	90.823	Pteropus_vampyrus
ENSDORG00000003466	Smarca5	97	83.246	ENSPNAG00000027824	SMARCA5	97	82.970	Pygocentrus_nattereri
ENSDORG00000003466	Smarca5	97	90.823	ENSRNOG00000018149	Smarca5	95	90.823	Rattus_norvegicus
ENSDORG00000003466	Smarca5	97	90.612	ENSRBIG00000044644	SMARCA5	90	90.612	Rhinopithecus_bieti
ENSDORG00000003466	Smarca5	98	90.481	ENSRROG00000029591	SMARCA5	95	90.612	Rhinopithecus_roxellana
ENSDORG00000003466	Smarca5	97	90.717	ENSSBOG00000036257	SMARCA5	90	90.717	Saimiri_boliviensis_boliviensis
ENSDORG00000003466	Smarca5	97	90.506	ENSSHAG00000008464	SMARCA5	95	90.506	Sarcophilus_harrisii
ENSDORG00000003466	Smarca5	97	83.983	ENSSFOG00015013252	SMARCA5	92	83.983	Scleropages_formosus
ENSDORG00000003466	Smarca5	97	87.987	ENSSPUG00000007604	SMARCA5	97	97.704	Sphenodon_punctatus
ENSDORG00000003466	Smarca5	97	90.928	ENSSSCG00000009047	SMARCA5	91	90.779	Sus_scrofa
ENSDORG00000003466	Smarca5	97	89.252	ENSTGUG00000002408	SMARCA5	94	89.252	Taeniopygia_guttata
ENSDORG00000003466	Smarca5	98	90.700	ENSUAMG00000023495	SMARCA5	91	90.700	Ursus_americanus
ENSDORG00000003466	Smarca5	97	90.928	ENSUMAG00000015324	SMARCA5	92	90.928	Ursus_maritimus
ENSDORG00000003466	Smarca5	97	90.612	ENSVPAG00000008982	SMARCA5	90	90.612	Vicugna_pacos
ENSDORG00000003466	Smarca5	97	90.928	ENSVVUG00000017473	SMARCA5	91	90.776	Vulpes_vulpes
ENSDORG00000003466	Smarca5	93	86.587	ENSXETG00000017566	smarca5	92	86.587	Xenopus_tropicalis