EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000004558 (Gene tree)
Gene ID: 106001276
Gene Symbol: Tnrc6c
Alias: 9930033H14Rik
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 58968 bases
Position: chrKN672353.1:2192611-2251578
Accession: 106001276
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000025417	Ago_hook	PF10427.9	7e-18	1	1
ENSDORP00000004267	Ago_hook	PF10427.9	1.1e-17	1	1
ENSDORP00000004267	RRM_1	PF00076.22	0.0001	1	1
ENSDORP00000025417	RRM_1	PF00076.22	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000026628	-	5532	XM_013036380	ENSDORP00000025417	1843 (aa)	XP_012891834	UPI000BACF008
ENSDORT00000004558	-	5052	-	ENSDORP00000004267	1683 (aa)	-	UPI000BAD0484

Gene Model

Click here to download ENSDORG00000004558's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000004558's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000004558	Tnrc6c	99	34.561	ENSDORG00000003386	Tnrc6b	64	38.124

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000004558	Tnrc6c	100	85.824	ENSG00000078687	TNRC6C	100	88.421	Homo_sapiens
ENSDORG00000004558	Tnrc6c	80	51.957	ENSAPOG00000019749	tnrc6c1	98	46.828	Acanthochromis_polyacanthus
ENSDORG00000004558	Tnrc6c	100	82.155	ENSAMEG00000013756	TNRC6C	99	81.281	Ailuropoda_melanoleuca
ENSDORG00000004558	Tnrc6c	88	48.654	ENSACIG00000008075	tnrc6c1	78	49.931	Amphilophus_citrinellus
ENSDORG00000004558	Tnrc6c	75	67.099	ENSAOCG00000023968	tnrc6c1	99	46.324	Amphiprion_ocellaris
ENSDORG00000004558	Tnrc6c	80	51.588	ENSAPEG00000009020	tnrc6c1	99	46.561	Amphiprion_percula
ENSDORG00000004558	Tnrc6c	100	79.053	ENSAPLG00000005456	TNRC6C	99	78.686	Anas_platyrhynchos
ENSDORG00000004558	Tnrc6c	100	80.000	ENSACAG00000016198	TNRC6C	98	79.197	Anolis_carolinensis
ENSDORG00000004558	Tnrc6c	100	85.227	ENSANAG00000021554	TNRC6C	100	85.697	Aotus_nancymaae
ENSDORG00000004558	Tnrc6c	95	49.211	ENSACLG00000000424	tnrc6c1	78	49.588	Astatotilapia_calliptera
ENSDORG00000004558	Tnrc6c	100	83.451	ENSBTAG00000018658	TNRC6C	100	84.158	Bos_taurus
ENSDORG00000004558	Tnrc6c	100	85.227	ENSCJAG00000019431	TNRC6C	100	85.697	Callithrix_jacchus
ENSDORG00000004558	Tnrc6c	100	84.141	ENSCAFG00000005224	TNRC6C	98	83.708	Canis_familiaris
ENSDORG00000004558	Tnrc6c	100	86.372	ENSCAFG00020006661	TNRC6C	100	84.956	Canis_lupus_dingo
ENSDORG00000004558	Tnrc6c	100	83.873	ENSCHIG00000026004	TNRC6C	100	84.226	Capra_hircus
ENSDORG00000004558	Tnrc6c	100	84.890	ENSTSYG00000005403	TNRC6C	100	85.121	Carlito_syrichta
ENSDORG00000004558	Tnrc6c	100	81.283	ENSCAPG00000007307	TNRC6C	99	81.057	Cavia_aperea
ENSDORG00000004558	Tnrc6c	100	85.723	ENSCPOG00000000467	TNRC6C	100	85.387	Cavia_porcellus
ENSDORG00000004558	Tnrc6c	100	85.933	ENSCCAG00000030524	TNRC6C	100	86.051	Cebus_capucinus
ENSDORG00000004558	Tnrc6c	100	85.933	ENSCATG00000033135	TNRC6C	100	86.051	Cercocebus_atys
ENSDORG00000004558	Tnrc6c	100	87.493	ENSCLAG00000011139	TNRC6C	98	86.354	Chinchilla_lanigera
ENSDORG00000004558	Tnrc6c	100	84.035	ENSCSAG00000005167	TNRC6C	99	83.664	Chlorocebus_sabaeus
ENSDORG00000004558	Tnrc6c	75	85.308	ENSCHOG00000000088	TNRC6C	75	84.874	Choloepus_hoffmanni
ENSDORG00000004558	Tnrc6c	100	82.145	ENSCPBG00000027960	TNRC6C	100	82.381	Chrysemys_picta_bellii
ENSDORG00000004558	Tnrc6c	100	85.344	ENSCANG00000041771	TNRC6C	100	85.580	Colobus_angolensis_palliatus
ENSDORG00000004558	Tnrc6c	100	87.064	ENSCGRG00001022686	Tnrc6c	100	86.119	Cricetulus_griseus_chok1gshd
ENSDORG00000004558	Tnrc6c	100	87.064	ENSCGRG00000018041	Tnrc6c	100	86.119	Cricetulus_griseus_crigri
ENSDORG00000004558	Tnrc6c	100	46.315	ENSCSEG00000012744	tnrc6c1	98	46.015	Cynoglossus_semilaevis
ENSDORG00000004558	Tnrc6c	100	51.862	ENSDARG00000076847	tnrc6c1	96	52.861	Danio_rerio
ENSDORG00000004558	Tnrc6c	100	83.247	ENSDNOG00000003247	TNRC6C	98	81.178	Dasypus_novemcinctus
ENSDORG00000004558	Tnrc6c	89	78.201	ENSETEG00000005527	TNRC6C	90	78.287	Echinops_telfairi
ENSDORG00000004558	Tnrc6c	100	85.310	ENSEASG00005004799	TNRC6C	100	85.841	Equus_asinus_asinus
ENSDORG00000004558	Tnrc6c	100	85.310	ENSECAG00000012486	TNRC6C	99	84.542	Equus_caballus
ENSDORG00000004558	Tnrc6c	96	83.978	ENSEEUG00000010008	TNRC6C	96	82.125	Erinaceus_europaeus
ENSDORG00000004558	Tnrc6c	100	84.118	ENSFCAG00000028358	TNRC6C	100	84.529	Felis_catus
ENSDORG00000004558	Tnrc6c	100	79.209	ENSFALG00000000848	TNRC6C	100	78.418	Ficedula_albicollis
ENSDORG00000004558	Tnrc6c	100	87.198	ENSFDAG00000010368	TNRC6C	100	86.705	Fukomys_damarensis
ENSDORG00000004558	Tnrc6c	94	44.316	ENSFHEG00000002936	tnrc6c1	99	44.651	Fundulus_heteroclitus
ENSDORG00000004558	Tnrc6c	100	82.409	ENSGALG00000001725	TNRC6C	100	82.586	Gallus_gallus
ENSDORG00000004558	Tnrc6c	100	46.821	ENSGAFG00000019019	tnrc6c1	99	45.785	Gambusia_affinis
ENSDORG00000004558	Tnrc6c	80	52.177	ENSGACG00000012320	tnrc6c1	97	46.891	Gasterosteus_aculeatus
ENSDORG00000004558	Tnrc6c	100	81.743	ENSGAGG00000022043	TNRC6C	99	81.254	Gopherus_agassizii
ENSDORG00000004558	Tnrc6c	100	85.176	ENSGGOG00000011304	TNRC6C	100	85.235	Gorilla_gorilla
ENSDORG00000004558	Tnrc6c	95	48.325	ENSHBUG00000010846	tnrc6c1	83	49.521	Haplochromis_burtoni
ENSDORG00000004558	Tnrc6c	100	87.493	ENSHGLG00000004809	TNRC6C	98	86.141	Heterocephalus_glaber_female
ENSDORG00000004558	Tnrc6c	100	87.375	ENSHGLG00100012597	TNRC6C	98	86.354	Heterocephalus_glaber_male
ENSDORG00000004558	Tnrc6c	99	49.696	ENSIPUG00000000818	tnrc6c1	98	50.358	Ictalurus_punctatus
ENSDORG00000004558	Tnrc6c	100	87.847	ENSSTOG00000009101	TNRC6C	100	86.819	Ictidomys_tridecemlineatus
ENSDORG00000004558	Tnrc6c	100	86.769	ENSJJAG00000017055	Tnrc6c	98	85.981	Jaculus_jaculus
ENSDORG00000004558	Tnrc6c	99	44.852	ENSKMAG00000021023	tnrc6c1	97	48.280	Kryptolebias_marmoratus
ENSDORG00000004558	Tnrc6c	100	71.612	ENSLACG00000015283	TNRC6C	100	71.283	Latimeria_chalumnae
ENSDORG00000004558	Tnrc6c	100	53.865	ENSLOCG00000013377	tnrc6c1	98	54.291	Lepisosteus_oculatus
ENSDORG00000004558	Tnrc6c	100	86.178	ENSLAFG00000011122	TNRC6C	99	85.059	Loxodonta_africana
ENSDORG00000004558	Tnrc6c	100	85.933	ENSMFAG00000043943	TNRC6C	100	86.051	Macaca_fascicularis
ENSDORG00000004558	Tnrc6c	100	85.933	ENSMMUG00000011924	TNRC6C	100	86.051	Macaca_mulatta
ENSDORG00000004558	Tnrc6c	100	85.874	ENSMNEG00000030405	TNRC6C	100	85.992	Macaca_nemestrina
ENSDORG00000004558	Tnrc6c	100	85.992	ENSMLEG00000033436	TNRC6C	100	86.109	Mandrillus_leucophaeus
ENSDORG00000004558	Tnrc6c	80	50.451	ENSMAMG00000023613	tnrc6c1	97	47.938	Mastacembelus_armatus
ENSDORG00000004558	Tnrc6c	95	49.211	ENSMZEG00005010920	tnrc6c1	78	49.588	Maylandia_zebra
ENSDORG00000004558	Tnrc6c	100	73.766	ENSMGAG00000003906	TNRC6C	99	73.662	Meleagris_gallopavo
ENSDORG00000004558	Tnrc6c	100	86.887	ENSMAUG00000021618	Tnrc6c	100	87.123	Mesocricetus_auratus
ENSDORG00000004558	Tnrc6c	100	86.808	ENSMICG00000003952	TNRC6C	100	86.808	Microcebus_murinus
ENSDORG00000004558	Tnrc6c	100	87.891	ENSMOCG00000015879	Tnrc6c	100	86.919	Microtus_ochrogaster
ENSDORG00000004558	Tnrc6c	78	53.048	ENSMMOG00000005203	tnrc6c1	97	48.893	Mola_mola
ENSDORG00000004558	Tnrc6c	100	82.734	ENSMODG00000001785	TNRC6C	98	81.203	Monodelphis_domestica
ENSDORG00000004558	Tnrc6c	100	87.832	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	87.034	Mus_caroli
ENSDORG00000004558	Tnrc6c	100	87.478	ENSMUSG00000025571	Tnrc6c	100	86.460	Mus_musculus
ENSDORG00000004558	Tnrc6c	100	87.773	MGP_PahariEiJ_G0018593	Tnrc6c	100	86.862	Mus_pahari
ENSDORG00000004558	Tnrc6c	100	87.596	MGP_SPRETEiJ_G0018309	Tnrc6c	100	86.575	Mus_spretus
ENSDORG00000004558	Tnrc6c	100	82.285	ENSMPUG00000013348	TNRC6C	97	81.923	Mustela_putorius_furo
ENSDORG00000004558	Tnrc6c	100	79.098	ENSMLUG00000014431	TNRC6C	97	78.175	Myotis_lucifugus
ENSDORG00000004558	Tnrc6c	100	87.766	ENSNGAG00000012203	Tnrc6c	98	87.026	Nannospalax_galili
ENSDORG00000004558	Tnrc6c	98	49.482	ENSNBRG00000005344	tnrc6c1	79	49.453	Neolamprologus_brichardi
ENSDORG00000004558	Tnrc6c	100	82.075	ENSNLEG00000000047	TNRC6C	99	81.880	Nomascus_leucogenys
ENSDORG00000004558	Tnrc6c	97	75.271	ENSMEUG00000005104	TNRC6C	100	75.059	Notamacropus_eugenii
ENSDORG00000004558	Tnrc6c	100	87.021	ENSODEG00000012499	TNRC6C	100	87.139	Octodon_degus
ENSDORG00000004558	Tnrc6c	93	50.863	ENSONIG00000002210	tnrc6c1	95	48.334	Oreochromis_niloticus
ENSDORG00000004558	Tnrc6c	99	61.232	ENSOANG00000009758	-	99	58.765	Ornithorhynchus_anatinus
ENSDORG00000004558	Tnrc6c	53	73.163	ENSOCUG00000006122	TNRC6C	94	69.463	Oryctolagus_cuniculus
ENSDORG00000004558	Tnrc6c	94	45.122	ENSORLG00000009837	tnrc6c1	100	67.286	Oryzias_latipes
ENSDORG00000004558	Tnrc6c	91	47.465	ENSORLG00020016510	tnrc6c1	97	46.202	Oryzias_latipes_hni
ENSDORG00000004558	Tnrc6c	76	39.948	ENSORLG00015000171	tnrc6c1	97	39.987	Oryzias_latipes_hsok
ENSDORG00000004558	Tnrc6c	94	45.200	ENSOMEG00000000357	tnrc6c1	99	45.603	Oryzias_melastigma
ENSDORG00000004558	Tnrc6c	100	85.063	ENSOGAG00000007197	TNRC6C	100	85.179	Otolemur_garnettii
ENSDORG00000004558	Tnrc6c	96	78.998	ENSOARG00000006041	TNRC6C	97	78.781	Ovis_aries
ENSDORG00000004558	Tnrc6c	100	85.933	ENSPPAG00000027160	TNRC6C	100	86.051	Pan_paniscus
ENSDORG00000004558	Tnrc6c	100	84.353	ENSPPRG00000018881	TNRC6C	100	84.765	Panthera_pardus
ENSDORG00000004558	Tnrc6c	90	82.533	ENSPTIG00000008791	TNRC6C	91	74.939	Panthera_tigris_altaica
ENSDORG00000004558	Tnrc6c	100	85.815	ENSPTRG00000009699	TNRC6C	100	85.933	Pan_troglodytes
ENSDORG00000004558	Tnrc6c	100	86.085	ENSPANG00000019994	TNRC6C	100	86.203	Papio_anubis
ENSDORG00000004558	Tnrc6c	92	59.679	ENSPKIG00000005428	tnrc6c1	98	49.153	Paramormyrops_kingsleyae
ENSDORG00000004558	Tnrc6c	100	80.506	ENSPSIG00000018069	TNRC6C	100	80.149	Pelodiscus_sinensis
ENSDORG00000004558	Tnrc6c	70	53.448	ENSPMGG00000022911	tnrc6c1	97	62.449	Periophthalmus_magnuspinnatus
ENSDORG00000004558	Tnrc6c	100	88.009	ENSPEMG00000009785	Tnrc6c	100	86.001	Peromyscus_maniculatus_bairdii
ENSDORG00000004558	Tnrc6c	57	77.618	ENSPCIG00000017421	-	99	77.515	Phascolarctos_cinereus
ENSDORG00000004558	Tnrc6c	100	46.796	ENSPFOG00000012560	tnrc6c1	97	51.512	Poecilia_formosa
ENSDORG00000004558	Tnrc6c	100	46.963	ENSPLAG00000021055	tnrc6c1	97	47.814	Poecilia_latipinna
ENSDORG00000004558	Tnrc6c	100	84.207	ENSPPYG00000008679	TNRC6C	97	83.977	Pongo_abelii
ENSDORG00000004558	Tnrc6c	90	91.943	ENSPCAG00000012510	TNRC6C	89	91.943	Procavia_capensis
ENSDORG00000004558	Tnrc6c	100	86.992	ENSPCOG00000021451	TNRC6C	100	87.110	Propithecus_coquereli
ENSDORG00000004558	Tnrc6c	96	88.983	ENSPVAG00000002008	TNRC6C	95	88.983	Pteropus_vampyrus
ENSDORG00000004558	Tnrc6c	95	48.623	ENSPNYG00000014477	tnrc6c1	84	49.352	Pundamilia_nyererei
ENSDORG00000004558	Tnrc6c	100	86.726	ENSRNOG00000022395	Tnrc6c	100	86.903	Rattus_norvegicus
ENSDORG00000004558	Tnrc6c	100	85.580	ENSRBIG00000027777	TNRC6C	100	85.756	Rhinopithecus_bieti
ENSDORG00000004558	Tnrc6c	100	85.639	ENSRROG00000042912	TNRC6C	100	85.815	Rhinopithecus_roxellana
ENSDORG00000004558	Tnrc6c	100	84.500	ENSSBOG00000023981	TNRC6C	100	83.862	Saimiri_boliviensis_boliviensis
ENSDORG00000004558	Tnrc6c	52	81.633	ENSSHAG00000018330	-	100	81.955	Sarcophilus_harrisii
ENSDORG00000004558	Tnrc6c	53	55.069	ENSSFOG00015004735	-	99	61.097	Scleropages_formosus
ENSDORG00000004558	Tnrc6c	78	56.132	ENSSFOG00015006475	tnrc6c1	99	50.025	Scleropages_formosus
ENSDORG00000004558	Tnrc6c	100	46.167	ENSSMAG00000012761	tnrc6c1	99	48.669	Scophthalmus_maximus
ENSDORG00000004558	Tnrc6c	94	49.272	ENSSDUG00000002366	tnrc6c1	99	47.686	Seriola_dumerili
ENSDORG00000004558	Tnrc6c	94	47.765	ENSSLDG00000025613	tnrc6c1	97	47.980	Seriola_lalandi_dorsalis
ENSDORG00000004558	Tnrc6c	91	89.655	ENSSARG00000006816	TNRC6C	91	89.427	Sorex_araneus
ENSDORG00000004558	Tnrc6c	82	79.013	ENSSPUG00000007341	TNRC6C	99	84.615	Sphenodon_punctatus
ENSDORG00000004558	Tnrc6c	78	50.530	ENSSPAG00000014977	tnrc6c1	97	45.377	Stegastes_partitus
ENSDORG00000004558	Tnrc6c	100	80.590	ENSSSCG00000034373	TNRC6C	100	81.711	Sus_scrofa
ENSDORG00000004558	Tnrc6c	100	81.979	ENSTGUG00000007733	TNRC6C	100	81.693	Taeniopygia_guttata
ENSDORG00000004558	Tnrc6c	80	51.002	ENSTRUG00000011685	tnrc6c1	100	47.004	Takifugu_rubripes
ENSDORG00000004558	Tnrc6c	88	51.913	ENSTNIG00000005273	tnrc6c1	100	57.573	Tetraodon_nigroviridis
ENSDORG00000004558	Tnrc6c	64	88.672	ENSTBEG00000005046	TNRC6C	95	88.672	Tupaia_belangeri
ENSDORG00000004558	Tnrc6c	100	85.580	ENSTTRG00000010828	TNRC6C	99	85.134	Tursiops_truncatus
ENSDORG00000004558	Tnrc6c	100	85.858	ENSUMAG00000013614	TNRC6C	99	85.064	Ursus_maritimus
ENSDORG00000004558	Tnrc6c	52	75.792	ENSVPAG00000006765	-	99	76.678	Vicugna_pacos
ENSDORG00000004558	Tnrc6c	100	86.077	ENSVVUG00000015268	TNRC6C	100	86.490	Vulpes_vulpes
ENSDORG00000004558	Tnrc6c	100	70.653	ENSXETG00000019470	tnrc6c	100	70.444	Xenopus_tropicalis
ENSDORG00000004558	Tnrc6c	100	47.913	ENSXMAG00000025971	tnrc6c1	99	47.151	Xiphophorus_maculatus