EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSDORG00000004585 (Gene tree)
Gene ID
105999013
Gene Symbol
Puf60
Alias
2410104I19Rik|2810454F19Rik
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Dipodomys_ordii
Status
putative
Strand
Minus strand
Length
8173 bases
Position
chrKN672525.1:418415-426587
Accession
105999013
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDORP00000026920RRM_1PF00076.228.1e-4412
ENSDORP00000026920RRM_1PF00076.228.1e-4422
ENSDORP00000017246RRM_1PF00076.229.3e-4412
ENSDORP00000017246RRM_1PF00076.229.3e-4422
ENSDORP00000004294RRM_1PF00076.229.4e-4412
ENSDORP00000004294RRM_1PF00076.229.4e-4422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDORT00000004585-1674-ENSDORP00000004294557 (aa)-UPI000BACFBE8
ENSDORT00000025016-1771XM_013033883ENSDORP00000026920534 (aa)XP_012889337UPI000BAD1798
ENSDORT00000035569-1822XM_013033882ENSDORP00000017246551 (aa)XP_012889336UPI000BAD0CBB
Gene Model
Click here to download ENSDORG00000004585's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000004585's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDORG00000004585Puf605135.294ENSDORG00000003250U2af26537.255
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDORG00000004585Puf6010099.274ENSG00000179950PUF6010099.225Homo_sapiens
ENSDORG00000004585Puf609585.985ENSAPOG00000001713puf60b9985.985Acanthochromis_polyacanthus
ENSDORG00000004585Puf6010097.459ENSAMEG00000006406PUF609997.459Ailuropoda_melanoleuca
ENSDORG00000004585Puf609485.797ENSACIG00000021705puf60b10085.797Amphilophus_citrinellus
ENSDORG00000004585Puf609477.351ENSACIG00000003263-9977.778Amphilophus_citrinellus
ENSDORG00000004585Puf609581.369ENSAOCG00000015558-9981.939Amphiprion_ocellaris
ENSDORG00000004585Puf609585.958ENSAOCG00000005395puf60b10086.756Amphiprion_ocellaris
ENSDORG00000004585Puf609375.397ENSAPEG00000001836-9976.667Amphiprion_percula
ENSDORG00000004585Puf609583.170ENSAPEG00000011923puf60b9983.170Amphiprion_percula
ENSDORG00000004585Puf609581.143ENSATEG00000006303-9981.524Anabas_testudineus
ENSDORG00000004585Puf609585.795ENSATEG00000001730puf60b9985.795Anabas_testudineus
ENSDORG00000004585Puf609598.467ENSAPLG00000010150PUF6010098.467Anas_platyrhynchos
ENSDORG00000004585Puf609596.205ENSACAG00000001645PUF609796.205Anolis_carolinensis
ENSDORG00000004585Puf6010098.559ENSANAG00000018626PUF6010099.225Aotus_nancymaae
ENSDORG00000004585Puf609485.797ENSACLG00000004462puf60b10085.797Astatotilapia_calliptera
ENSDORG00000004585Puf609476.636ENSAMXG00000041030puf60b10074.906Astyanax_mexicanus
ENSDORG00000004585Puf609484.932ENSAMXG00000036570puf60a9784.736Astyanax_mexicanus
ENSDORG00000004585Puf6010098.917ENSBTAG00000037493PUF609999.425Bos_taurus
ENSDORG00000004585Puf607552.650WBGene00004389rnp-68353.497Caenorhabditis_elegans
ENSDORG00000004585Puf6010098.561ENSCJAG00000021485PUF609998.561Callithrix_jacchus
ENSDORG00000004585Puf6010099.439ENSCAFG00000001400PUF609999.439Canis_familiaris
ENSDORG00000004585Puf6010099.457ENSCAFG00020018754PUF609999.457Canis_lupus_dingo
ENSDORG00000004585Puf6010099.274ENSCHIG00000001618PUF609299.274Capra_hircus
ENSDORG00000004585Puf6010098.561ENSTSYG00000011912PUF6010099.612Carlito_syrichta
ENSDORG00000004585Puf6010093.357ENSCPOG00000014613PUF609993.537Cavia_porcellus
ENSDORG00000004585Puf6010098.559ENSCCAG00000007744PUF609998.559Cebus_capucinus
ENSDORG00000004585Puf6010099.274ENSCATG00000035405PUF609999.274Cercocebus_atys
ENSDORG00000004585Puf6010098.921ENSCLAG00000009154PUF609998.921Chinchilla_lanigera
ENSDORG00000004585Puf609499.225ENSCSAG00000008878PUF6010099.225Chlorocebus_sabaeus
ENSDORG00000004585Puf609598.467ENSCPBG00000005595PUF609898.467Chrysemys_picta_bellii
ENSDORG00000004585Puf609448.968ENSCING00000008436-9848.956Ciona_intestinalis
ENSDORG00000004585Puf605863.043ENSCING00000002156-8763.043Ciona_intestinalis
ENSDORG00000004585Puf609150.820ENSCSAVG00000004765-9750.412Ciona_savignyi
ENSDORG00000004585Puf609155.556ENSCSAVG00000001385-9955.192Ciona_savignyi
ENSDORG00000004585Puf608199.310ENSCANG00000041843PUF6010099.310Colobus_angolensis_palliatus
ENSDORG00000004585Puf6010098.561ENSCGRG00001017442Puf609998.561Cricetulus_griseus_chok1gshd
ENSDORG00000004585Puf6010098.022ENSCGRG00000003717Puf609998.022Cricetulus_griseus_crigri
ENSDORG00000004585Puf609585.199ENSCSEG00000019887puf60b9385.009Cynoglossus_semilaevis
ENSDORG00000004585Puf609375.099ENSCSEG00000014845-8977.273Cynoglossus_semilaevis
ENSDORG00000004585Puf608481.015ENSCVAG00000001560-9879.747Cyprinodon_variegatus
ENSDORG00000004585Puf609484.837ENSCVAG00000009386puf60b10085.988Cyprinodon_variegatus
ENSDORG00000004585Puf609479.135ENSDARG00000001241puf60b9996.825Danio_rerio
ENSDORG00000004585Puf609486.742ENSDARG00000032175puf60a9993.617Danio_rerio
ENSDORG00000004585Puf6010082.342ENSDNOG00000043278PUF609882.342Dasypus_novemcinctus
ENSDORG00000004585Puf609151.064FBgn0028577hfp9951.009Drosophila_melanogaster
ENSDORG00000004585Puf609562.651ENSEBUG00000014291puf60b8565.739Eptatretus_burgeri
ENSDORG00000004585Puf609172.634ENSEBUG00000005470-8872.222Eptatretus_burgeri
ENSDORG00000004585Puf6010099.457ENSEASG00005009695PUF609999.457Equus_asinus_asinus
ENSDORG00000004585Puf6010099.277ENSECAG00000024681PUF609999.277Equus_caballus
ENSDORG00000004585Puf609783.670ENSELUG00000018443-9985.799Esox_lucius
ENSDORG00000004585Puf609583.871ENSELUG00000006507puf60b9980.769Esox_lucius
ENSDORG00000004585Puf6010098.561ENSFCAG00000001045PUF6010099.419Felis_catus
ENSDORG00000004585Puf609585.824ENSFALG00000001136PUF609886.973Ficedula_albicollis
ENSDORG00000004585Puf6010098.561ENSFDAG00000017177PUF609998.561Fukomys_damarensis
ENSDORG00000004585Puf609584.440ENSFHEG00000020046puf60b10086.372Fundulus_heteroclitus
ENSDORG00000004585Puf609079.317ENSFHEG00000021687PUF6010080.164Fundulus_heteroclitus
ENSDORG00000004585Puf609572.180ENSGMOG00000006392puf60b10071.429Gadus_morhua
ENSDORG00000004585Puf606298.256ENSGALG00000039901PUF609498.256Gallus_gallus
ENSDORG00000004585Puf609479.344ENSGAFG00000004334-9978.842Gambusia_affinis
ENSDORG00000004585Puf609583.871ENSGAFG00000021040puf60b10085.797Gambusia_affinis
ENSDORG00000004585Puf609470.543ENSGACG00000001484-10069.423Gasterosteus_aculeatus
ENSDORG00000004585Puf609573.724ENSGACG00000004717puf60b9873.055Gasterosteus_aculeatus
ENSDORG00000004585Puf609498.462ENSGAGG00000013289PUF609298.467Gopherus_agassizii
ENSDORG00000004585Puf6010099.274ENSGGOG00000004646PUF609999.274Gorilla_gorilla
ENSDORG00000004585Puf609585.009ENSHBUG00000015118puf60b10085.797Haplochromis_burtoni
ENSDORG00000004585Puf609581.784ENSHBUG00000009634-10082.738Haplochromis_burtoni
ENSDORG00000004585Puf6010098.561ENSHGLG00000006111PUF609998.561Heterocephalus_glaber_female
ENSDORG00000004585Puf6010098.561ENSHGLG00100012362PUF609998.561Heterocephalus_glaber_male
ENSDORG00000004585Puf609266.798ENSHCOG00000000378-9965.038Hippocampus_comes
ENSDORG00000004585Puf609482.505ENSHCOG00000015541puf60b10082.103Hippocampus_comes
ENSDORG00000004585Puf609478.947ENSIPUG00000004660puf60b9978.719Ictalurus_punctatus
ENSDORG00000004585Puf609581.907ENSIPUG00000002453puf60a9982.609Ictalurus_punctatus
ENSDORG00000004585Puf6010099.637ENSSTOG00000025037PUF609999.637Ictidomys_tridecemlineatus
ENSDORG00000004585Puf6010099.278ENSJJAG00000001076Puf609999.278Jaculus_jaculus
ENSDORG00000004585Puf609478.450ENSKMAG00000010106-10075.933Kryptolebias_marmoratus
ENSDORG00000004585Puf609485.221ENSKMAG00000016745puf60b10086.372Kryptolebias_marmoratus
ENSDORG00000004585Puf609784.416ENSLBEG00000012505puf60b10084.416Labrus_bergylta
ENSDORG00000004585Puf606890.710ENSLACG00000005456PUF6010090.437Latimeria_chalumnae
ENSDORG00000004585Puf609689.642ENSLOCG00000010106puf60b9989.544Lepisosteus_oculatus
ENSDORG00000004585Puf6010097.459ENSLAFG00000022929PUF609997.459Loxodonta_africana
ENSDORG00000004585Puf6010099.274ENSMFAG00000043373PUF609999.274Macaca_fascicularis
ENSDORG00000004585Puf6010099.094ENSMMUG00000013558PUF609999.094Macaca_mulatta
ENSDORG00000004585Puf6010099.274ENSMNEG00000031099PUF609999.274Macaca_nemestrina
ENSDORG00000004585Puf609499.225ENSMLEG00000040009PUF6010099.225Mandrillus_leucophaeus
ENSDORG00000004585Puf609685.338ENSMAMG00000010394puf60b10084.112Mastacembelus_armatus
ENSDORG00000004585Puf609582.543ENSMAMG00000019476-9982.163Mastacembelus_armatus
ENSDORG00000004585Puf609485.797ENSMZEG00005018515puf60b10085.797Maylandia_zebra
ENSDORG00000004585Puf609581.973ENSMZEG00005019425-9981.973Maylandia_zebra
ENSDORG00000004585Puf609598.467ENSMGAG00000013070PUF609898.467Meleagris_gallopavo
ENSDORG00000004585Puf608983.402ENSMAUG00000018549-9583.644Mesocricetus_auratus
ENSDORG00000004585Puf607298.250ENSMAUG00000014267-9898.250Mesocricetus_auratus
ENSDORG00000004585Puf6010099.274ENSMICG00000012226PUF609999.617Microcebus_murinus
ENSDORG00000004585Puf6010098.741ENSMOCG00000018780Puf609998.741Microtus_ochrogaster
ENSDORG00000004585Puf609575.394ENSMMOG00000018059-9976.712Mola_mola
ENSDORG00000004585Puf609486.180ENSMMOG00000004217puf60b10086.180Mola_mola
ENSDORG00000004585Puf6010098.127ENSMODG00000009161PUF609998.127Monodelphis_domestica
ENSDORG00000004585Puf609578.220ENSMALG00000006797puf60b9978.220Monopterus_albus
ENSDORG00000004585Puf609580.645ENSMALG00000000200-9979.245Monopterus_albus
ENSDORG00000004585Puf6010098.561MGP_CAROLIEiJ_G0019910Puf609998.561Mus_caroli
ENSDORG00000004585Puf6010098.561ENSMUSG00000002524Puf609998.561Mus_musculus
ENSDORG00000004585Puf6010098.561MGP_PahariEiJ_G0019920Puf609998.561Mus_pahari
ENSDORG00000004585Puf6010098.561MGP_SPRETEiJ_G0020812Puf609998.561Mus_spretus
ENSDORG00000004585Puf6010099.093ENSMPUG00000008137PUF609799.093Mustela_putorius_furo
ENSDORG00000004585Puf609595.446ENSMLUG00000013032-9895.446Myotis_lucifugus
ENSDORG00000004585Puf6010098.730ENSMLUG00000000238-9998.018Myotis_lucifugus
ENSDORG00000004585Puf6010098.921ENSNGAG00000000712Puf6010099.806Nannospalax_galili
ENSDORG00000004585Puf607684.471ENSNBRG00000013047puf60b9784.471Neolamprologus_brichardi
ENSDORG00000004585Puf609582.163ENSNBRG00000017223-9982.129Neolamprologus_brichardi
ENSDORG00000004585Puf6010099.274ENSNLEG00000002156PUF609999.274Nomascus_leucogenys
ENSDORG00000004585Puf607099.317ENSOPRG00000002147PUF607599.317Ochotona_princeps
ENSDORG00000004585Puf609174.359ENSODEG00000015513-9971.563Octodon_degus
ENSDORG00000004585Puf6074100.000ENSODEG00000014024-98100.000Octodon_degus
ENSDORG00000004585Puf609585.038ENSONIG00000006247puf60b9985.038Oreochromis_niloticus
ENSDORG00000004585Puf609582.197ENSONIG00000014030-9982.197Oreochromis_niloticus
ENSDORG00000004585Puf609278.516ENSOANG00000006962PUF609978.516Ornithorhynchus_anatinus
ENSDORG00000004585Puf609378.788ENSORLG00000028655-9978.897Oryzias_latipes
ENSDORG00000004585Puf609585.009ENSORLG00000012279puf60b10085.221Oryzias_latipes
ENSDORG00000004585Puf609578.679ENSORLG00020018144-9878.788Oryzias_latipes_hni
ENSDORG00000004585Puf609585.009ENSORLG00020007333puf6010085.221Oryzias_latipes_hni
ENSDORG00000004585Puf609584.121ENSORLG00015007718puf60b10085.086Oryzias_latipes_hsok
ENSDORG00000004585Puf609478.937ENSORLG00015016833-9879.048Oryzias_latipes_hsok
ENSDORG00000004585Puf609579.843ENSOMEG00000022185-9879.696Oryzias_melastigma
ENSDORG00000004585Puf609582.528ENSOMEG00000001643puf60b10082.341Oryzias_melastigma
ENSDORG00000004585Puf6010099.819ENSOGAG00000006259PUF609999.819Otolemur_garnettii
ENSDORG00000004585Puf609596.941ENSOARG00000016235PUF609996.941Ovis_aries
ENSDORG00000004585Puf6010099.274ENSPPAG00000029933PUF609999.274Pan_paniscus
ENSDORG00000004585Puf6010098.561ENSPPRG00000003257PUF6010099.419Panthera_pardus
ENSDORG00000004585Puf6010099.064ENSPTIG00000009795PUF609997.126Panthera_tigris_altaica
ENSDORG00000004585Puf6010099.093ENSPTRG00000020670PUF609999.093Pan_troglodytes
ENSDORG00000004585Puf6010099.093ENSPTRG00000043963-9999.093Pan_troglodytes
ENSDORG00000004585Puf6010099.274ENSPANG00000021936PUF609999.274Papio_anubis
ENSDORG00000004585Puf609587.643ENSPKIG00000012204puf60b10088.462Paramormyrops_kingsleyae
ENSDORG00000004585Puf609983.955ENSPKIG00000004295puf60a9992.353Paramormyrops_kingsleyae
ENSDORG00000004585Puf609598.279ENSPSIG00000004679PUF609998.279Pelodiscus_sinensis
ENSDORG00000004585Puf609484.542ENSPMGG00000013444puf60b9984.542Periophthalmus_magnuspinnatus
ENSDORG00000004585Puf6010098.741ENSPEMG00000008820Puf609998.741Peromyscus_maniculatus_bairdii
ENSDORG00000004585Puf609996.533ENSPCIG00000020270PUF609999.616Phascolarctos_cinereus
ENSDORG00000004585Puf609480.732ENSPFOG00000011118-9781.081Poecilia_formosa
ENSDORG00000004585Puf609584.440ENSPFOG00000019217puf60b10085.019Poecilia_formosa
ENSDORG00000004585Puf609485.221ENSPLAG00000010754puf60b10086.372Poecilia_latipinna
ENSDORG00000004585Puf609977.355ENSPLAG00000017025-9080.695Poecilia_latipinna
ENSDORG00000004585Puf609584.440ENSPMEG00000000838puf60b10086.372Poecilia_mexicana
ENSDORG00000004585Puf609977.355ENSPMEG00000009767-9081.081Poecilia_mexicana
ENSDORG00000004585Puf609581.701ENSPREG00000005440puf60b10084.127Poecilia_reticulata
ENSDORG00000004585Puf607697.602ENSPPYG00000018951-9597.602Pongo_abelii
ENSDORG00000004585Puf607699.520ENSPCAG00000014837PUF6010099.520Procavia_capensis
ENSDORG00000004585Puf6010099.096ENSPCOG00000027981PUF609999.425Propithecus_coquereli
ENSDORG00000004585Puf609499.617ENSPVAG00000016167PUF608199.617Pteropus_vampyrus
ENSDORG00000004585Puf609485.797ENSPNYG00000002556puf60b10085.797Pundamilia_nyererei
ENSDORG00000004585Puf609581.973ENSPNYG00000004273-9981.973Pundamilia_nyererei
ENSDORG00000004585Puf609977.164ENSPNAG00000019415puf60b9176.893Pygocentrus_nattereri
ENSDORG00000004585Puf609484.961ENSPNAG00000019909puf60a9984.766Pygocentrus_nattereri
ENSDORG00000004585Puf6010098.516ENSRNOG00000009960Puf609998.559Rattus_norvegicus
ENSDORG00000004585Puf6010099.274ENSRBIG00000035274PUF609999.274Rhinopithecus_bieti
ENSDORG00000004585Puf6010099.274ENSRROG00000029360PUF609999.274Rhinopithecus_roxellana
ENSDORG00000004585Puf609796.822ENSSBOG00000027089PUF609898.084Saimiri_boliviensis_boliviensis
ENSDORG00000004585Puf609197.194ENSSHAG00000006668PUF609597.194Sarcophilus_harrisii
ENSDORG00000004585Puf609581.522ENSSFOG00015019371puf60a9887.525Scleropages_formosus
ENSDORG00000004585Puf609482.510ENSSFOG00015019619puf60b9986.437Scleropages_formosus
ENSDORG00000004585Puf606992.933ENSSMAG00000016381puf60b7392.933Scophthalmus_maximus
ENSDORG00000004585Puf609480.153ENSSDUG00000007048-9880.534Seriola_dumerili
ENSDORG00000004585Puf609583.829ENSSDUG00000009935puf60b9984.646Seriola_dumerili
ENSDORG00000004585Puf609585.932ENSSLDG00000024011puf60b10084.299Seriola_lalandi_dorsalis
ENSDORG00000004585Puf609480.455ENSSLDG00000007366-9980.835Seriola_lalandi_dorsalis
ENSDORG00000004585Puf606286.136ENSSPUG00000013518PUF609485.460Sphenodon_punctatus
ENSDORG00000004585Puf609482.061ENSSPAG00000020285-10082.634Stegastes_partitus
ENSDORG00000004585Puf609583.179ENSSPAG00000012144puf60b10084.486Stegastes_partitus
ENSDORG00000004585Puf6010098.911ENSSSCG00000038800PUF609899.010Sus_scrofa
ENSDORG00000004585Puf609595.211ENSTGUG00000012797-10095.211Taeniopygia_guttata
ENSDORG00000004585Puf609379.960ENSTRUG00000008843-10080.361Takifugu_rubripes
ENSDORG00000004585Puf609584.470ENSTRUG00000005420puf60b10082.991Takifugu_rubripes
ENSDORG00000004585Puf609578.011ENSTNIG00000003069-10078.011Tetraodon_nigroviridis
ENSDORG00000004585Puf609584.470ENSTNIG00000013675puf60b10084.280Tetraodon_nigroviridis
ENSDORG00000004585Puf605896.284ENSTBEG00000002751-9996.271Tupaia_belangeri
ENSDORG00000004585Puf607281.503ENSTBEG00000001899-10081.792Tupaia_belangeri
ENSDORG00000004585Puf609498.837ENSTTRG00000017088PUF6010098.837Tursiops_truncatus
ENSDORG00000004585Puf6010099.456ENSUAMG00000024917PUF609999.456Ursus_americanus
ENSDORG00000004585Puf609694.518ENSUMAG00000000272PUF609994.192Ursus_maritimus
ENSDORG00000004585Puf6010099.456ENSVVUG00000022527PUF6010099.612Vulpes_vulpes
ENSDORG00000004585Puf609594.466ENSXETG00000012469puf609994.841Xenopus_tropicalis
ENSDORG00000004585Puf609384.722ENSXCOG00000012355puf60b10085.913Xiphophorus_couchianus
ENSDORG00000004585Puf609580.315ENSXMAG00000010507-9979.528Xiphophorus_maculatus
ENSDORG00000004585Puf609584.440ENSXMAG00000001862puf60b10086.372Xiphophorus_maculatus

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