EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000005543 (Gene tree)
Gene ID: 105995530
Gene Symbol: Ssb
Alias: La protein|SS-B|autoantigen La
Full Name: Sjogren syndrome antigen B
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 13549 bases
Position: chrKN672351.1:20486445-20499993
Accession: 105995530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000005186	RRM_1	PF00076.22	1.1e-14	1	1
ENSDORP00000005186	RRM_3	PF08777.11	1.2e-30	1	1
ENSDORP00000005186	La	PF05383.17	4e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000005544	-	1194	XM_013029280	ENSDORP00000005186	397 (aa)	XP_012884734	UPI000BAD1D19

Gene Model

Click here to download ENSDORG00000005543's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000005543's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000005543	Ssb	100	84.783	ENSG00000138385	SSB	100	94.565	Homo_sapiens
ENSDORG00000005543	Ssb	98	53.000	ENSAPOG00000003448	ssb	100	53.218	Acanthochromis_polyacanthus
ENSDORG00000005543	Ssb	100	82.857	ENSAMEG00000010507	SSB	100	82.857	Ailuropoda_melanoleuca
ENSDORG00000005543	Ssb	93	55.376	ENSACIG00000001738	ssb	96	55.376	Amphilophus_citrinellus
ENSDORG00000005543	Ssb	98	53.250	ENSAOCG00000020398	ssb	100	53.465	Amphiprion_ocellaris
ENSDORG00000005543	Ssb	98	53.500	ENSAPEG00000020395	ssb	100	53.713	Amphiprion_percula
ENSDORG00000005543	Ssb	99	54.926	ENSATEG00000016884	ssb	100	54.926	Anabas_testudineus
ENSDORG00000005543	Ssb	100	65.094	ENSAPLG00000006109	SSB	100	65.094	Anas_platyrhynchos
ENSDORG00000005543	Ssb	100	61.538	ENSACAG00000017008	SSB	99	60.577	Anolis_carolinensis
ENSDORG00000005543	Ssb	100	75.426	ENSANAG00000027195	-	100	74.939	Aotus_nancymaae
ENSDORG00000005543	Ssb	99	51.597	ENSACLG00000010798	ssb	100	51.597	Astatotilapia_calliptera
ENSDORG00000005543	Ssb	98	51.707	ENSAMXG00000012606	ssb	100	51.691	Astyanax_mexicanus
ENSDORG00000005543	Ssb	100	83.698	ENSBTAG00000008716	SSB	100	83.698	Bos_taurus
ENSDORG00000005543	Ssb	73	35.644	WBGene00016653	C44E4.4	76	36.304	Caenorhabditis_elegans
ENSDORG00000005543	Ssb	100	85.645	ENSCJAG00000045073	SSB	100	85.645	Callithrix_jacchus
ENSDORG00000005543	Ssb	100	84.223	ENSCAFG00000012418	SSB	100	84.223	Canis_familiaris
ENSDORG00000005543	Ssb	100	84.223	ENSCAFG00020002900	SSB	100	84.223	Canis_lupus_dingo
ENSDORG00000005543	Ssb	100	83.698	ENSCHIG00000022624	-	100	83.698	Capra_hircus
ENSDORG00000005543	Ssb	100	79.167	ENSCHIG00000022196	-	100	79.167	Capra_hircus
ENSDORG00000005543	Ssb	100	85.608	ENSTSYG00000000097	SSB	100	85.608	Carlito_syrichta
ENSDORG00000005543	Ssb	100	88.161	ENSCPOG00000003338	SSB	100	88.161	Cavia_porcellus
ENSDORG00000005543	Ssb	100	85.888	ENSCCAG00000035147	SSB	100	85.888	Cebus_capucinus
ENSDORG00000005543	Ssb	100	63.504	ENSCATG00000036701	SSB	100	63.260	Cercocebus_atys
ENSDORG00000005543	Ssb	100	64.268	ENSCATG00000042909	-	100	64.268	Cercocebus_atys
ENSDORG00000005543	Ssb	100	84.672	ENSCLAG00000015617	-	100	84.672	Chinchilla_lanigera
ENSDORG00000005543	Ssb	98	77.612	ENSCSAG00000018390	-	100	77.612	Chlorocebus_sabaeus
ENSDORG00000005543	Ssb	100	84.915	ENSCSAG00000015200	SSB	89	84.915	Chlorocebus_sabaeus
ENSDORG00000005543	Ssb	100	84.672	ENSCHOG00000007763	SSB	100	84.672	Choloepus_hoffmanni
ENSDORG00000005543	Ssb	100	70.602	ENSCPBG00000006519	SSB	100	73.012	Chrysemys_picta_bellii
ENSDORG00000005543	Ssb	100	84.915	ENSCANG00000027695	SSB	100	84.915	Colobus_angolensis_palliatus
ENSDORG00000005543	Ssb	100	71.463	ENSCANG00000033240	-	100	71.463	Colobus_angolensis_palliatus
ENSDORG00000005543	Ssb	98	65.347	ENSCANG00000028838	-	95	65.347	Colobus_angolensis_palliatus
ENSDORG00000005543	Ssb	100	77.941	ENSCGRG00001024831	Ssb	100	79.902	Cricetulus_griseus_chok1gshd
ENSDORG00000005543	Ssb	100	77.941	ENSCGRG00000005387	Ssb	100	79.902	Cricetulus_griseus_crigri
ENSDORG00000005543	Ssb	98	53.865	ENSCSEG00000011599	ssb	99	53.865	Cynoglossus_semilaevis
ENSDORG00000005543	Ssb	99	52.956	ENSCVAG00000021558	ssb	100	52.956	Cyprinodon_variegatus
ENSDORG00000005543	Ssb	98	50.860	ENSDARG00000029252	ssb	99	51.345	Danio_rerio
ENSDORG00000005543	Ssb	100	83.698	ENSDNOG00000013450	SSB	100	83.698	Dasypus_novemcinctus
ENSDORG00000005543	Ssb	64	37.687	FBgn0011638	La	67	39.114	Drosophila_melanogaster
ENSDORG00000005543	Ssb	96	46.667	ENSEBUG00000001237	ssb	96	46.667	Eptatretus_burgeri
ENSDORG00000005543	Ssb	100	85.158	ENSEASG00005022835	SSB	100	85.158	Equus_asinus_asinus
ENSDORG00000005543	Ssb	100	85.401	ENSECAG00000018495	SSB	100	85.401	Equus_caballus
ENSDORG00000005543	Ssb	75	74.832	ENSEEUG00000008077	SSB	78	74.832	Erinaceus_europaeus
ENSDORG00000005543	Ssb	98	52.567	ENSELUG00000020929	ssb	100	53.771	Esox_lucius
ENSDORG00000005543	Ssb	100	84.466	ENSFCAG00000011601	SSB	100	84.466	Felis_catus
ENSDORG00000005543	Ssb	100	66.102	ENSFALG00000000930	SSB	100	68.281	Ficedula_albicollis
ENSDORG00000005543	Ssb	100	84.672	ENSFDAG00000000598	SSB	100	84.672	Fukomys_damarensis
ENSDORG00000005543	Ssb	73	50.658	ENSFHEG00000003268	ssb	93	50.489	Fundulus_heteroclitus
ENSDORG00000005543	Ssb	97	52.010	ENSGMOG00000002664	ssb	99	52.261	Gadus_morhua
ENSDORG00000005543	Ssb	100	68.599	ENSGALG00000009677	SSB	100	66.667	Gallus_gallus
ENSDORG00000005543	Ssb	99	50.976	ENSGAFG00000002749	ssb	100	51.220	Gambusia_affinis
ENSDORG00000005543	Ssb	99	50.735	ENSGACG00000005107	ssb	100	52.696	Gasterosteus_aculeatus
ENSDORG00000005543	Ssb	100	71.325	ENSGAGG00000007807	SSB	100	72.289	Gopherus_agassizii
ENSDORG00000005543	Ssb	62	76.190	ENSGGOG00000023471	-	100	75.758	Gorilla_gorilla
ENSDORG00000005543	Ssb	100	70.316	ENSGGOG00000024891	-	100	70.316	Gorilla_gorilla
ENSDORG00000005543	Ssb	99	51.351	ENSHBUG00000006584	ssb	100	51.351	Haplochromis_burtoni
ENSDORG00000005543	Ssb	100	84.951	ENSHGLG00000017580	-	100	84.951	Heterocephalus_glaber_female
ENSDORG00000005543	Ssb	100	77.696	ENSHGLG00000005832	-	100	77.696	Heterocephalus_glaber_female
ENSDORG00000005543	Ssb	100	76.998	ENSHGLG00000004478	-	100	76.998	Heterocephalus_glaber_female
ENSDORG00000005543	Ssb	100	74.321	ENSHGLG00100008767	-	100	74.321	Heterocephalus_glaber_male
ENSDORG00000005543	Ssb	100	84.951	ENSHGLG00100003084	-	100	84.951	Heterocephalus_glaber_male
ENSDORG00000005543	Ssb	97	52.120	ENSHCOG00000019011	ssb	99	51.870	Hippocampus_comes
ENSDORG00000005543	Ssb	98	51.816	ENSIPUG00000003681	SSB	100	52.518	Ictalurus_punctatus
ENSDORG00000005543	Ssb	100	84.672	ENSSTOG00000008416	SSB	100	84.672	Ictidomys_tridecemlineatus
ENSDORG00000005543	Ssb	100	80.723	ENSJJAG00000023158	-	100	80.723	Jaculus_jaculus
ENSDORG00000005543	Ssb	99	66.334	ENSJJAG00000016250	-	99	66.334	Jaculus_jaculus
ENSDORG00000005543	Ssb	99	54.074	ENSKMAG00000017317	ssb	100	54.074	Kryptolebias_marmoratus
ENSDORG00000005543	Ssb	98	51.750	ENSLBEG00000017345	ssb	100	51.980	Labrus_bergylta
ENSDORG00000005543	Ssb	99	62.077	ENSLACG00000014056	SSB	99	62.077	Latimeria_chalumnae
ENSDORG00000005543	Ssb	98	60.345	ENSLOCG00000007933	ssb	99	61.084	Lepisosteus_oculatus
ENSDORG00000005543	Ssb	100	70.073	ENSLAFG00000028909	-	100	69.830	Loxodonta_africana
ENSDORG00000005543	Ssb	100	79.621	ENSLAFG00000000867	-	100	80.332	Loxodonta_africana
ENSDORG00000005543	Ssb	74	63.696	ENSLAFG00000026721	-	99	63.696	Loxodonta_africana
ENSDORG00000005543	Ssb	89	76.620	ENSMFAG00000041478	-	100	76.620	Macaca_fascicularis
ENSDORG00000005543	Ssb	100	85.158	ENSMFAG00000039066	SSB	100	85.158	Macaca_fascicularis
ENSDORG00000005543	Ssb	100	85.158	ENSMMUG00000023051	SSB	100	85.158	Macaca_mulatta
ENSDORG00000005543	Ssb	100	73.892	ENSMMUG00000011724	-	97	73.892	Macaca_mulatta
ENSDORG00000005543	Ssb	99	60.599	ENSMMUG00000039889	-	100	60.848	Macaca_mulatta
ENSDORG00000005543	Ssb	100	75.245	ENSMNEG00000028321	SSB	85	97.391	Macaca_nemestrina
ENSDORG00000005543	Ssb	89	76.620	ENSMNEG00000034698	-	100	76.620	Macaca_nemestrina
ENSDORG00000005543	Ssb	100	85.158	ENSMLEG00000035717	SSB	88	97.391	Mandrillus_leucophaeus
ENSDORG00000005543	Ssb	100	62.935	ENSMLEG00000042644	-	100	62.935	Mandrillus_leucophaeus
ENSDORG00000005543	Ssb	99	55.309	ENSMAMG00000004800	ssb	100	55.309	Mastacembelus_armatus
ENSDORG00000005543	Ssb	99	51.597	ENSMZEG00005005749	ssb	100	51.597	Maylandia_zebra
ENSDORG00000005543	Ssb	100	67.874	ENSMGAG00000010328	SSB	99	75.610	Meleagris_gallopavo
ENSDORG00000005543	Ssb	98	78.841	ENSMICG00000033304	-	98	78.920	Microcebus_murinus
ENSDORG00000005543	Ssb	99	85.086	ENSMICG00000028252	-	99	85.086	Microcebus_murinus
ENSDORG00000005543	Ssb	100	75.062	ENSMODG00000008227	-	100	75.309	Monodelphis_domestica
ENSDORG00000005543	Ssb	100	62.283	ENSMODG00000007027	-	100	63.027	Monodelphis_domestica
ENSDORG00000005543	Ssb	100	66.005	ENSMODG00000019271	-	100	66.005	Monodelphis_domestica
ENSDORG00000005543	Ssb	91	57.025	ENSMALG00000008045	ssb	89	57.337	Monopterus_albus
ENSDORG00000005543	Ssb	100	77.831	MGP_CAROLIEiJ_G0023629	-	100	90.761	Mus_caroli
ENSDORG00000005543	Ssb	100	77.590	ENSMUSG00000068882	Ssb	100	91.304	Mus_musculus
ENSDORG00000005543	Ssb	100	77.590	MGP_PahariEiJ_G0025081	-	100	91.304	Mus_pahari
ENSDORG00000005543	Ssb	100	77.590	MGP_SPRETEiJ_G0024551	Ssb	100	91.304	Mus_spretus
ENSDORG00000005543	Ssb	100	84.915	ENSMPUG00000000785	SSB	100	84.915	Mustela_putorius_furo
ENSDORG00000005543	Ssb	100	84.173	ENSMLUG00000016316	SSB	100	84.173	Myotis_lucifugus
ENSDORG00000005543	Ssb	99	51.716	ENSNBRG00000012661	ssb	100	51.716	Neolamprologus_brichardi
ENSDORG00000005543	Ssb	100	85.401	ENSNLEG00000004958	SSB	100	85.401	Nomascus_leucogenys
ENSDORG00000005543	Ssb	100	64.851	ENSNLEG00000028754	-	100	64.851	Nomascus_leucogenys
ENSDORG00000005543	Ssb	60	81.048	ENSMEUG00000001650	-	100	81.048	Notamacropus_eugenii
ENSDORG00000005543	Ssb	52	81.290	ENSOPRG00000008475	-	100	59.532	Ochotona_princeps
ENSDORG00000005543	Ssb	93	81.217	ENSODEG00000004202	-	100	79.630	Octodon_degus
ENSDORG00000005543	Ssb	99	50.980	ENSONIG00000008776	ssb	100	50.980	Oreochromis_niloticus
ENSDORG00000005543	Ssb	100	76.642	ENSOANG00000008543	SSB	100	77.372	Ornithorhynchus_anatinus
ENSDORG00000005543	Ssb	100	84.672	ENSOCUG00000010396	SSB	100	84.672	Oryctolagus_cuniculus
ENSDORG00000005543	Ssb	99	54.054	ENSORLG00000017208	ssb	100	53.140	Oryzias_latipes
ENSDORG00000005543	Ssb	99	53.431	ENSORLG00020022574	ssb	100	53.012	Oryzias_latipes_hni
ENSDORG00000005543	Ssb	99	53.808	ENSORLG00015016592	ssb	100	52.899	Oryzias_latipes_hsok
ENSDORG00000005543	Ssb	98	52.475	ENSOMEG00000003193	ssb	100	52.941	Oryzias_melastigma
ENSDORG00000005543	Ssb	100	81.991	ENSOGAG00000029768	SSB	100	81.991	Otolemur_garnettii
ENSDORG00000005543	Ssb	100	83.455	ENSOARG00000002906	SSB	100	83.455	Ovis_aries
ENSDORG00000005543	Ssb	97	66.076	ENSPPAG00000006189	-	93	69.252	Pan_paniscus
ENSDORG00000005543	Ssb	100	69.830	ENSPPAG00000032427	-	100	84.496	Pan_paniscus
ENSDORG00000005543	Ssb	100	84.783	ENSPPAG00000042673	SSB	100	84.783	Pan_paniscus
ENSDORG00000005543	Ssb	100	84.466	ENSPPRG00000006599	SSB	100	84.466	Panthera_pardus
ENSDORG00000005543	Ssb	100	84.223	ENSPTIG00000011021	SSB	97	84.223	Panthera_tigris_altaica
ENSDORG00000005543	Ssb	100	69.479	ENSPTRG00000042880	-	100	69.479	Pan_troglodytes
ENSDORG00000005543	Ssb	100	84.783	ENSPTRG00000012620	SSB	100	84.783	Pan_troglodytes
ENSDORG00000005543	Ssb	100	85.158	ENSPANG00000007440	SSB	100	85.158	Papio_anubis
ENSDORG00000005543	Ssb	100	63.524	ENSPANG00000034126	-	100	62.035	Papio_anubis
ENSDORG00000005543	Ssb	98	60.859	ENSPANG00000031877	-	95	58.838	Papio_anubis
ENSDORG00000005543	Ssb	98	57.921	ENSPKIG00000019325	ssb	99	58.466	Paramormyrops_kingsleyae
ENSDORG00000005543	Ssb	100	67.229	ENSPSIG00000002265	SSB	93	69.880	Pelodiscus_sinensis
ENSDORG00000005543	Ssb	84	50.000	ENSPMGG00000020075	ssb	90	51.009	Periophthalmus_magnuspinnatus
ENSDORG00000005543	Ssb	81	49.231	ENSPMAG00000002982	ssb	88	47.326	Petromyzon_marinus
ENSDORG00000005543	Ssb	100	74.696	ENSPCIG00000028591	-	100	74.696	Phascolarctos_cinereus
ENSDORG00000005543	Ssb	99	52.580	ENSPFOG00000009650	ssb	100	52.580	Poecilia_formosa
ENSDORG00000005543	Ssb	99	52.334	ENSPLAG00000020498	ssb	100	52.580	Poecilia_latipinna
ENSDORG00000005543	Ssb	99	52.334	ENSPMEG00000001051	ssb	100	52.334	Poecilia_mexicana
ENSDORG00000005543	Ssb	92	53.316	ENSPREG00000003708	ssb	97	53.316	Poecilia_reticulata
ENSDORG00000005543	Ssb	100	85.401	ENSPPYG00000012919	SSB	100	85.401	Pongo_abelii
ENSDORG00000005543	Ssb	94	80.840	ENSPCAG00000010276	SSB	100	81.627	Procavia_capensis
ENSDORG00000005543	Ssb	100	73.723	ENSPCOG00000023189	-	100	73.723	Propithecus_coquereli
ENSDORG00000005543	Ssb	100	82.020	ENSPCOG00000015741	-	92	90.517	Propithecus_coquereli
ENSDORG00000005543	Ssb	87	85.028	ENSPVAG00000006615	SSB	98	82.486	Pteropus_vampyrus
ENSDORG00000005543	Ssb	99	51.597	ENSPNYG00000006444	ssb	100	51.597	Pundamilia_nyererei
ENSDORG00000005543	Ssb	98	51.214	ENSPNAG00000011708	ssb	100	52.038	Pygocentrus_nattereri
ENSDORG00000005543	Ssb	100	78.554	ENSRNOG00000007998	Ssb	100	78.554	Rattus_norvegicus
ENSDORG00000005543	Ssb	100	78.765	ENSRNOG00000011606	AABR07061825.1	100	78.765	Rattus_norvegicus
ENSDORG00000005543	Ssb	100	75.000	ENSRBIG00000041972	SSB	88	97.391	Rhinopithecus_bieti
ENSDORG00000005543	Ssb	100	60.827	ENSRBIG00000029918	-	100	60.827	Rhinopithecus_bieti
ENSDORG00000005543	Ssb	89	76.359	ENSRBIG00000041608	-	98	73.913	Rhinopithecus_bieti
ENSDORG00000005543	Ssb	93	70.052	ENSRBIG00000041232	-	98	70.052	Rhinopithecus_bieti
ENSDORG00000005543	Ssb	100	69.586	ENSRROG00000007149	-	100	69.586	Rhinopithecus_roxellana
ENSDORG00000005543	Ssb	100	84.915	ENSRROG00000040346	SSB	100	84.915	Rhinopithecus_roxellana
ENSDORG00000005543	Ssb	97	75.862	ENSRROG00000034102	-	98	75.743	Rhinopithecus_roxellana
ENSDORG00000005543	Ssb	98	71.072	ENSRROG00000031684	-	100	71.072	Rhinopithecus_roxellana
ENSDORG00000005543	Ssb	100	85.888	ENSSBOG00000027204	SSB	100	85.888	Saimiri_boliviensis_boliviensis
ENSDORG00000005543	Ssb	100	74.696	ENSSHAG00000018062	SSB	100	74.696	Sarcophilus_harrisii
ENSDORG00000005543	Ssb	99	59.268	ENSSFOG00015000550	ssb	100	60.145	Scleropages_formosus
ENSDORG00000005543	Ssb	98	52.685	ENSSMAG00000013885	ssb	100	53.671	Scophthalmus_maximus
ENSDORG00000005543	Ssb	99	54.074	ENSSDUG00000020117	ssb	100	54.074	Seriola_dumerili
ENSDORG00000005543	Ssb	99	54.545	ENSSLDG00000002525	ssb	100	54.408	Seriola_lalandi_dorsalis
ENSDORG00000005543	Ssb	94	75.321	ENSSARG00000007747	SSB	100	72.751	Sorex_araneus
ENSDORG00000005543	Ssb	100	67.312	ENSSPUG00000012112	SSB	100	69.976	Sphenodon_punctatus
ENSDORG00000005543	Ssb	98	53.250	ENSSPAG00000005696	ssb	100	53.465	Stegastes_partitus
ENSDORG00000005543	Ssb	99	69.830	ENSSSCG00000015938	SSB	98	70.936	Sus_scrofa
ENSDORG00000005543	Ssb	100	66.265	ENSTGUG00000007942	SSB	100	68.434	Taeniopygia_guttata
ENSDORG00000005543	Ssb	99	55.665	ENSTRUG00000017839	ssb	100	55.172	Takifugu_rubripes
ENSDORG00000005543	Ssb	92	55.615	ENSTNIG00000000915	ssb	100	54.545	Tetraodon_nigroviridis
ENSDORG00000005543	Ssb	82	97.391	ENSTBEG00000009056	SSB	82	97.391	Tupaia_belangeri
ENSDORG00000005543	Ssb	100	84.185	ENSTTRG00000002152	SSB	100	84.185	Tursiops_truncatus
ENSDORG00000005543	Ssb	92	87.200	ENSUAMG00000027833	SSB	97	87.200	Ursus_americanus
ENSDORG00000005543	Ssb	100	84.466	ENSUMAG00000013907	SSB	100	84.466	Ursus_maritimus
ENSDORG00000005543	Ssb	100	84.915	ENSVPAG00000007183	SSB	100	84.915	Vicugna_pacos
ENSDORG00000005543	Ssb	100	84.223	ENSVVUG00000016573	SSB	78	84.223	Vulpes_vulpes
ENSDORG00000005543	Ssb	100	53.687	ENSXETG00000025402	ssb	100	53.226	Xenopus_tropicalis
ENSDORG00000005543	Ssb	92	54.178	ENSXCOG00000019109	ssb	93	60.938	Xiphophorus_couchianus
ENSDORG00000005543	Ssb	99	51.707	ENSXMAG00000004888	ssb	100	51.707	Xiphophorus_maculatus