EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000005955 (Gene tree)
Gene ID: -
Gene Symbol: Snrpc
Alias: Snrp1c|U1-C
Full Name: U1 small nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 24956 bases
Position: chrKN672466.1:3707972-3732927
Accession: 109489
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000005577	zf-U1	PF06220.12	8.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000005955	-	693	-	ENSDORP00000005577	230 (aa)	-	UPI000BAD1315

Gene Model

Click here to download ENSDORG00000005955's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000005955's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000005955	Snrpc	66	64.535	ENSDORG00000023276	-	57	69.000
ENSDORG00000005955	Snrpc	62	76.224	ENSDORG00000029823	-	62	92.941

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000005955	Snrpc	75	76.536	ENSG00000124562	SNRPC	100	81.132	Homo_sapiens
ENSDORG00000005955	Snrpc	75	78.453	ENSAMEG00000000963	SNRPC	99	80.000	Ailuropoda_melanoleuca
ENSDORG00000005955	Snrpc	68	76.543	ENSACAG00000015721	SNRPC	88	79.874	Anolis_carolinensis
ENSDORG00000005955	Snrpc	66	82.119	ENSANAG00000019726	-	92	81.046	Aotus_nancymaae
ENSDORG00000005955	Snrpc	66	79.618	ENSANAG00000007843	-	100	80.503	Aotus_nancymaae
ENSDORG00000005955	Snrpc	66	75.155	ENSANAG00000020588	-	91	76.282	Aotus_nancymaae
ENSDORG00000005955	Snrpc	66	69.079	ENSANAG00000021444	-	54	77.907	Aotus_nancymaae
ENSDORG00000005955	Snrpc	66	73.684	ENSANAG00000021026	-	100	71.242	Aotus_nancymaae
ENSDORG00000005955	Snrpc	67	73.333	ENSANAG00000019157	-	100	76.730	Aotus_nancymaae
ENSDORG00000005955	Snrpc	75	78.889	ENSANAG00000019696	-	100	81.132	Aotus_nancymaae
ENSDORG00000005955	Snrpc	66	80.255	ENSBTAG00000024549	SNRPC	100	81.132	Bos_taurus
ENSDORG00000005955	Snrpc	75	77.654	ENSCJAG00000015321	-	100	81.132	Callithrix_jacchus
ENSDORG00000005955	Snrpc	66	77.707	ENSCJAG00000041822	-	100	78.616	Callithrix_jacchus
ENSDORG00000005955	Snrpc	66	78.981	ENSCJAG00000043055	-	100	79.874	Callithrix_jacchus
ENSDORG00000005955	Snrpc	66	74.522	ENSCAFG00000031775	-	53	94.118	Canis_familiaris
ENSDORG00000005955	Snrpc	66	68.790	ENSCAFG00000025525	-	100	67.296	Canis_familiaris
ENSDORG00000005955	Snrpc	66	80.380	ENSCAFG00000028988	-	100	79.375	Canis_familiaris
ENSDORG00000005955	Snrpc	67	76.730	ENSCAFG00020005758	-	100	78.616	Canis_lupus_dingo
ENSDORG00000005955	Snrpc	66	80.255	ENSCAFG00020005945	-	100	81.132	Canis_lupus_dingo
ENSDORG00000005955	Snrpc	66	74.522	ENSCAFG00020017383	-	53	94.118	Canis_lupus_dingo
ENSDORG00000005955	Snrpc	66	79.618	ENSCHIG00000012087	-	100	80.503	Capra_hircus
ENSDORG00000005955	Snrpc	66	68.874	ENSCHIG00000005039	-	100	65.625	Capra_hircus
ENSDORG00000005955	Snrpc	66	80.255	ENSTSYG00000011216	-	100	81.132	Carlito_syrichta
ENSDORG00000005955	Snrpc	66	63.694	ENSTSYG00000025721	-	100	58.824	Carlito_syrichta
ENSDORG00000005955	Snrpc	59	78.873	ENSCAPG00000005161	SNRPC	100	80.986	Cavia_aperea
ENSDORG00000005955	Snrpc	66	80.255	ENSCPOG00000008563	SNRPC	100	81.132	Cavia_porcellus
ENSDORG00000005955	Snrpc	65	60.897	ENSCCAG00000022209	-	99	57.542	Cebus_capucinus
ENSDORG00000005955	Snrpc	66	66.225	ENSCCAG00000028293	-	65	87.059	Cebus_capucinus
ENSDORG00000005955	Snrpc	69	73.780	ENSCCAG00000036059	-	89	76.730	Cebus_capucinus
ENSDORG00000005955	Snrpc	67	73.750	ENSCCAG00000022751	-	98	75.625	Cebus_capucinus
ENSDORG00000005955	Snrpc	75	75.281	ENSCATG00000035787	SNRPC	100	81.132	Cercocebus_atys
ENSDORG00000005955	Snrpc	66	80.255	ENSCLAG00000016920	SNRPC	100	81.132	Chinchilla_lanigera
ENSDORG00000005955	Snrpc	66	77.707	ENSCPBG00000027142	SNRPC	100	78.616	Chrysemys_picta_bellii
ENSDORG00000005955	Snrpc	66	80.255	ENSCANG00000028035	SNRPC	100	81.132	Colobus_angolensis_palliatus
ENSDORG00000005955	Snrpc	66	67.516	ENSCGRG00001021483	-	100	66.667	Cricetulus_griseus_chok1gshd
ENSDORG00000005955	Snrpc	66	79.618	ENSCGRG00001009011	-	100	80.503	Cricetulus_griseus_chok1gshd
ENSDORG00000005955	Snrpc	67	79.874	ENSCGRG00000005005	Snrpc	100	81.761	Cricetulus_griseus_crigri
ENSDORG00000005955	Snrpc	66	78.981	ENSDNOG00000034699	-	99	79.874	Dasypus_novemcinctus
ENSDORG00000005955	Snrpc	64	74.026	ENSETEG00000011265	-	54	89.412	Echinops_telfairi
ENSDORG00000005955	Snrpc	69	52.147	ENSEBUG00000011445	snrpc	52	61.364	Eptatretus_burgeri
ENSDORG00000005955	Snrpc	66	80.255	ENSEASG00005021007	SNRPC	100	81.132	Equus_asinus_asinus
ENSDORG00000005955	Snrpc	66	80.255	ENSECAG00000026848	SNRPC	100	81.132	Equus_caballus
ENSDORG00000005955	Snrpc	66	66.463	ENSELUG00000000815	SNRPC	52	91.358	Esox_lucius
ENSDORG00000005955	Snrpc	66	65.455	ENSELUG00000020489	snrpc	51	88.889	Esox_lucius
ENSDORG00000005955	Snrpc	75	78.771	ENSFCAG00000044077	-	100	81.132	Felis_catus
ENSDORG00000005955	Snrpc	66	78.981	ENSFALG00000003756	SNRPC	100	79.874	Ficedula_albicollis
ENSDORG00000005955	Snrpc	66	80.255	ENSFDAG00000018111	SNRPC	100	81.132	Fukomys_damarensis
ENSDORG00000005955	Snrpc	66	77.215	ENSGALG00000002773	SNRPC	100	78.125	Gallus_gallus
ENSDORG00000005955	Snrpc	66	77.707	ENSGAGG00000003063	SNRPC	100	78.616	Gopherus_agassizii
ENSDORG00000005955	Snrpc	66	80.255	ENSGGOG00000012499	SNRPC	100	81.132	Gorilla_gorilla
ENSDORG00000005955	Snrpc	66	80.255	ENSHGLG00000013981	SNRPC	99	82.692	Heterocephalus_glaber_female
ENSDORG00000005955	Snrpc	53	71.311	ENSHGLG00000005871	-	60	85.882	Heterocephalus_glaber_female
ENSDORG00000005955	Snrpc	66	68.421	ENSHGLG00000017741	-	100	67.296	Heterocephalus_glaber_female
ENSDORG00000005955	Snrpc	66	68.421	ENSHGLG00100010786	-	100	67.296	Heterocephalus_glaber_male
ENSDORG00000005955	Snrpc	66	77.070	ENSHGLG00100017764	-	100	77.358	Heterocephalus_glaber_male
ENSDORG00000005955	Snrpc	66	80.255	ENSHGLG00100009478	SNRPC	99	82.692	Heterocephalus_glaber_male
ENSDORG00000005955	Snrpc	66	80.255	ENSSTOG00000013786	SNRPC	100	81.132	Ictidomys_tridecemlineatus
ENSDORG00000005955	Snrpc	66	79.618	ENSJJAG00000021741	Snrpc	100	80.503	Jaculus_jaculus
ENSDORG00000005955	Snrpc	66	80.255	ENSLAFG00000013534	SNRPC	100	81.132	Loxodonta_africana
ENSDORG00000005955	Snrpc	66	80.255	ENSMFAG00000030525	-	100	81.132	Macaca_fascicularis
ENSDORG00000005955	Snrpc	66	80.255	ENSMFAG00000031764	-	100	81.132	Macaca_fascicularis
ENSDORG00000005955	Snrpc	66	84.211	ENSMMUG00000000869	-	100	83.117	Macaca_mulatta
ENSDORG00000005955	Snrpc	66	82.119	ENSMMUG00000039415	-	100	81.046	Macaca_mulatta
ENSDORG00000005955	Snrpc	66	70.701	ENSMMUG00000045425	-	53	89.286	Macaca_mulatta
ENSDORG00000005955	Snrpc	75	76.536	ENSMNEG00000032731	SNRPC	100	81.132	Macaca_nemestrina
ENSDORG00000005955	Snrpc	75	78.212	ENSMLEG00000033916	-	100	81.132	Mandrillus_leucophaeus
ENSDORG00000005955	Snrpc	71	71.598	ENSMLEG00000040224	-	55	82.105	Mandrillus_leucophaeus
ENSDORG00000005955	Snrpc	66	74.522	ENSMGAG00000006054	SNRPC	100	77.987	Meleagris_gallopavo
ENSDORG00000005955	Snrpc	66	79.618	ENSMICG00000032183	-	100	80.503	Microcebus_murinus
ENSDORG00000005955	Snrpc	70	74.390	ENSMICG00000036552	-	92	75.625	Microcebus_murinus
ENSDORG00000005955	Snrpc	75	77.528	ENSMICG00000007339	-	100	80.503	Microcebus_murinus
ENSDORG00000005955	Snrpc	66	82.119	ENSMICG00000009130	-	100	81.699	Microcebus_murinus
ENSDORG00000005955	Snrpc	66	79.618	ENSMOCG00000017609	Snrpc	100	80.503	Microtus_ochrogaster
ENSDORG00000005955	Snrpc	66	78.981	ENSMODG00000013904	-	100	79.874	Monodelphis_domestica
ENSDORG00000005955	Snrpc	66	66.225	ENSMALG00000001197	snrpc	100	69.281	Monopterus_albus
ENSDORG00000005955	Snrpc	66	79.618	MGP_CAROLIEiJ_G0021308	Snrpc	100	80.503	Mus_caroli
ENSDORG00000005955	Snrpc	66	79.618	ENSMUSG00000024217	Snrpc	100	80.503	Mus_musculus
ENSDORG00000005955	Snrpc	67	81.132	ENSMPUG00000003210	SNRPC	100	83.019	Mustela_putorius_furo
ENSDORG00000005955	Snrpc	67	81.132	ENSMLUG00000002488	SNRPC	100	83.019	Myotis_lucifugus
ENSDORG00000005955	Snrpc	66	79.618	ENSNGAG00000019686	Snrpc	100	80.503	Nannospalax_galili
ENSDORG00000005955	Snrpc	75	76.243	ENSNLEG00000034810	SNRPC	100	81.132	Nomascus_leucogenys
ENSDORG00000005955	Snrpc	59	78.169	ENSMEUG00000009300	SNRPC	100	80.282	Notamacropus_eugenii
ENSDORG00000005955	Snrpc	66	80.255	ENSODEG00000020370	-	100	81.132	Octodon_degus
ENSDORG00000005955	Snrpc	66	78.981	ENSODEG00000019633	-	100	79.874	Octodon_degus
ENSDORG00000005955	Snrpc	66	80.255	ENSODEG00000017080	-	100	81.132	Octodon_degus
ENSDORG00000005955	Snrpc	66	80.255	ENSODEG00000018985	-	100	81.132	Octodon_degus
ENSDORG00000005955	Snrpc	66	79.618	ENSODEG00000020201	-	100	80.503	Octodon_degus
ENSDORG00000005955	Snrpc	59	76.027	ENSOANG00000003405	SNRPC	99	78.082	Ornithorhynchus_anatinus
ENSDORG00000005955	Snrpc	66	80.255	ENSOCUG00000026668	-	100	81.132	Oryctolagus_cuniculus
ENSDORG00000005955	Snrpc	66	78.981	ENSOCUG00000026430	-	99	79.874	Oryctolagus_cuniculus
ENSDORG00000005955	Snrpc	66	79.618	ENSOGAG00000026269	-	100	80.503	Otolemur_garnettii
ENSDORG00000005955	Snrpc	64	67.949	ENSOGAG00000028405	-	53	73.494	Otolemur_garnettii
ENSDORG00000005955	Snrpc	75	77.095	ENSOGAG00000008755	-	100	79.888	Otolemur_garnettii
ENSDORG00000005955	Snrpc	66	80.255	ENSOARG00000010823	SNRPC	100	81.132	Ovis_aries
ENSDORG00000005955	Snrpc	66	80.255	ENSPPAG00000043871	SNRPC	100	81.132	Pan_paniscus
ENSDORG00000005955	Snrpc	75	77.654	ENSPPRG00000008647	-	100	81.132	Panthera_pardus
ENSDORG00000005955	Snrpc	75	77.654	ENSPTIG00000021867	-	100	81.132	Panthera_tigris_altaica
ENSDORG00000005955	Snrpc	64	61.905	ENSPTIG00000013329	-	55	77.647	Panthera_tigris_altaica
ENSDORG00000005955	Snrpc	66	80.255	ENSPTRG00000018070	SNRPC	100	81.132	Pan_troglodytes
ENSDORG00000005955	Snrpc	75	75.281	ENSPANG00000022802	-	100	81.132	Papio_anubis
ENSDORG00000005955	Snrpc	66	68.790	ENSPKIG00000001671	SNRPC	50	87.179	Paramormyrops_kingsleyae
ENSDORG00000005955	Snrpc	76	69.519	ENSPSIG00000004876	SNRPC	92	71.123	Pelodiscus_sinensis
ENSDORG00000005955	Snrpc	65	64.667	ENSPMGG00000022162	snrpc	100	68.000	Periophthalmus_magnuspinnatus
ENSDORG00000005955	Snrpc	66	79.605	ENSPEMG00000002763	-	100	75.163	Peromyscus_maniculatus_bairdii
ENSDORG00000005955	Snrpc	66	79.618	ENSPEMG00000010773	Snrpc	100	80.503	Peromyscus_maniculatus_bairdii
ENSDORG00000005955	Snrpc	65	62.914	ENSPMAG00000000602	snrpc	54	75.294	Petromyzon_marinus
ENSDORG00000005955	Snrpc	72	77.193	ENSPCAG00000016885	SNRPC	95	78.947	Procavia_capensis
ENSDORG00000005955	Snrpc	75	78.771	ENSPCOG00000004904	SNRPC	100	81.132	Propithecus_coquereli
ENSDORG00000005955	Snrpc	75	78.333	ENSPVAG00000015597	SNRPC	99	80.000	Pteropus_vampyrus
ENSDORG00000005955	Snrpc	66	79.618	ENSRNOG00000000493	Snrpc	100	80.503	Rattus_norvegicus
ENSDORG00000005955	Snrpc	66	80.255	ENSRBIG00000022998	-	100	81.132	Rhinopithecus_bieti
ENSDORG00000005955	Snrpc	66	80.255	ENSRBIG00000014819	-	100	81.132	Rhinopithecus_bieti
ENSDORG00000005955	Snrpc	75	77.095	ENSRBIG00000037567	-	100	81.132	Rhinopithecus_bieti
ENSDORG00000005955	Snrpc	75	77.095	ENSRROG00000041300	SNRPC	100	81.132	Rhinopithecus_roxellana
ENSDORG00000005955	Snrpc	75	76.536	ENSSBOG00000031528	-	100	81.132	Saimiri_boliviensis_boliviensis
ENSDORG00000005955	Snrpc	69	72.956	ENSSBOG00000032882	-	53	93.750	Saimiri_boliviensis_boliviensis
ENSDORG00000005955	Snrpc	68	62.805	ENSSBOG00000032361	-	57	77.647	Saimiri_boliviensis_boliviensis
ENSDORG00000005955	Snrpc	65	69.375	ENSSBOG00000023189	-	50	83.133	Saimiri_boliviensis_boliviensis
ENSDORG00000005955	Snrpc	66	80.255	ENSSHAG00000000945	-	87	82.166	Sarcophilus_harrisii
ENSDORG00000005955	Snrpc	71	74.419	ENSSARG00000008970	SNRPC	53	91.667	Sorex_araneus
ENSDORG00000005955	Snrpc	66	78.344	ENSSPUG00000002502	SNRPC	100	79.245	Sphenodon_punctatus
ENSDORG00000005955	Snrpc	66	80.255	ENSSSCG00000001531	SNRPC	100	81.132	Sus_scrofa
ENSDORG00000005955	Snrpc	66	79.618	ENSTGUG00000001773	SNRPC	100	80.503	Taeniopygia_guttata
ENSDORG00000005955	Snrpc	64	63.399	ENSTBEG00000015356	-	59	87.952	Tupaia_belangeri
ENSDORG00000005955	Snrpc	64	73.377	ENSTBEG00000013022	-	53	90.361	Tupaia_belangeri
ENSDORG00000005955	Snrpc	75	78.453	ENSTTRG00000007827	SNRPC	99	80.110	Tursiops_truncatus
ENSDORG00000005955	Snrpc	59	74.648	ENSVPAG00000003106	SNRPC	57	69.903	Vicugna_pacos
ENSDORG00000005955	Snrpc	64	81.169	ENSVVUG00000010467	-	92	77.711	Vulpes_vulpes
ENSDORG00000005955	Snrpc	66	78.981	ENSVVUG00000021947	-	100	79.874	Vulpes_vulpes
ENSDORG00000005955	Snrpc	66	72.152	ENSXETG00000024721	snrpc	52	90.361	Xenopus_tropicalis