EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000006278 (Gene tree)
Gene ID: 105998997
Gene Symbol: Cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 8248 bases
Position: chrKN672525.1:937746-945993
Accession: 105998997
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000020310	CPSF_A	PF03178.15	4.6e-92	1	1
ENSDORP00000005876	CPSF_A	PF03178.15	4.7e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000006278	-	4218	-	ENSDORP00000005876	1405 (aa)	-	UPI000BACFB45
ENSDORT00000036114	-	4307	XM_013033855	ENSDORP00000020310	1404 (aa)	XP_012889309	UPI000BACF8D8

Gene Model

Click here to download ENSDORG00000006278's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000006278's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000006278	Cpsf1	99	95.989	ENSG00000071894	CPSF1	97	95.989	Homo_sapiens
ENSDORG00000006278	Cpsf1	99	78.097	ENSAPOG00000019621	cpsf1	99	77.933	Acanthochromis_polyacanthus
ENSDORG00000006278	Cpsf1	99	94.349	ENSAMEG00000005557	CPSF1	99	94.349	Ailuropoda_melanoleuca
ENSDORG00000006278	Cpsf1	99	78.623	ENSACIG00000006112	cpsf1	97	78.838	Amphilophus_citrinellus
ENSDORG00000006278	Cpsf1	99	79.601	ENSAOCG00000007120	cpsf1	97	79.601	Amphiprion_ocellaris
ENSDORG00000006278	Cpsf1	99	79.929	ENSAPEG00000005755	cpsf1	97	79.872	Amphiprion_percula
ENSDORG00000006278	Cpsf1	98	78.193	ENSATEG00000011097	cpsf1	99	77.940	Anabas_testudineus
ENSDORG00000006278	Cpsf1	92	81.361	ENSACAG00000009655	CPSF1	96	81.361	Anolis_carolinensis
ENSDORG00000006278	Cpsf1	99	96.129	ENSANAG00000036514	CPSF1	97	96.129	Aotus_nancymaae
ENSDORG00000006278	Cpsf1	99	78.154	ENSACLG00000012231	cpsf1	99	78.167	Astatotilapia_calliptera
ENSDORG00000006278	Cpsf1	99	73.957	ENSAMXG00000008485	cpsf1	96	73.094	Astyanax_mexicanus
ENSDORG00000006278	Cpsf1	99	94.080	ENSBTAG00000008355	CPSF1	100	94.452	Bos_taurus
ENSDORG00000006278	Cpsf1	99	32.249	WBGene00022301	cpsf-1	100	39.718	Caenorhabditis_elegans
ENSDORG00000006278	Cpsf1	99	95.699	ENSCJAG00000021421	CPSF1	97	95.699	Callithrix_jacchus
ENSDORG00000006278	Cpsf1	99	95.991	ENSCAFG00000001600	CPSF1	100	96.116	Canis_familiaris
ENSDORG00000006278	Cpsf1	99	96.195	ENSCAFG00020020821	CPSF1	96	96.195	Canis_lupus_dingo
ENSDORG00000006278	Cpsf1	99	90.555	ENSCHIG00000015833	CPSF1	96	90.555	Capra_hircus
ENSDORG00000006278	Cpsf1	99	96.487	ENSTSYG00000028560	CPSF1	97	96.487	Carlito_syrichta
ENSDORG00000006278	Cpsf1	99	95.484	ENSCAPG00000014921	CPSF1	99	95.481	Cavia_aperea
ENSDORG00000006278	Cpsf1	99	94.839	ENSCPOG00000011448	CPSF1	97	94.839	Cavia_porcellus
ENSDORG00000006278	Cpsf1	99	95.914	ENSCCAG00000037658	CPSF1	97	95.914	Cebus_capucinus
ENSDORG00000006278	Cpsf1	99	95.842	ENSCATG00000037234	CPSF1	97	95.842	Cercocebus_atys
ENSDORG00000006278	Cpsf1	99	96.987	ENSCLAG00000012166	CPSF1	97	96.987	Chinchilla_lanigera
ENSDORG00000006278	Cpsf1	99	95.914	ENSCSAG00000008502	CPSF1	97	95.914	Chlorocebus_sabaeus
ENSDORG00000006278	Cpsf1	98	87.808	ENSCPBG00000018910	CPSF1	93	87.808	Chrysemys_picta_bellii
ENSDORG00000006278	Cpsf1	95	48.366	ENSCING00000000514	-	97	48.217	Ciona_intestinalis
ENSDORG00000006278	Cpsf1	99	48.014	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSDORG00000006278	Cpsf1	99	92.324	ENSCANG00000032760	CPSF1	97	92.324	Colobus_angolensis_palliatus
ENSDORG00000006278	Cpsf1	99	96.821	ENSCGRG00001016344	Cpsf1	97	96.628	Cricetulus_griseus_chok1gshd
ENSDORG00000006278	Cpsf1	99	94.220	ENSCGRG00000003118	Cpsf1	97	94.046	Cricetulus_griseus_crigri
ENSDORG00000006278	Cpsf1	99	77.834	ENSCSEG00000013464	cpsf1	99	77.326	Cynoglossus_semilaevis
ENSDORG00000006278	Cpsf1	87	76.693	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSDORG00000006278	Cpsf1	99	79.799	ENSDARG00000034178	cpsf1	97	79.686	Danio_rerio
ENSDORG00000006278	Cpsf1	67	96.812	ENSDNOG00000043654	CPSF1	88	96.812	Dasypus_novemcinctus
ENSDORG00000006278	Cpsf1	98	45.327	FBgn0024698	Cpsf160	96	44.958	Drosophila_melanogaster
ENSDORG00000006278	Cpsf1	79	97.987	ENSETEG00000006022	CPSF1	79	97.987	Echinops_telfairi
ENSDORG00000006278	Cpsf1	99	96.756	ENSEASG00005010774	CPSF1	97	96.557	Equus_asinus_asinus
ENSDORG00000006278	Cpsf1	99	96.828	ENSECAG00000022209	CPSF1	97	96.557	Equus_caballus
ENSDORG00000006278	Cpsf1	98	95.372	ENSEEUG00000000471	CPSF1	96	95.372	Erinaceus_europaeus
ENSDORG00000006278	Cpsf1	99	78.282	ENSELUG00000012271	cpsf1	100	78.016	Esox_lucius
ENSDORG00000006278	Cpsf1	99	96.965	ENSFDAG00000016060	CPSF1	97	96.628	Fukomys_damarensis
ENSDORG00000006278	Cpsf1	99	77.603	ENSFHEG00000016801	cpsf1	97	77.461	Fundulus_heteroclitus
ENSDORG00000006278	Cpsf1	99	77.683	ENSGMOG00000000796	cpsf1	97	77.976	Gadus_morhua
ENSDORG00000006278	Cpsf1	94	85.714	ENSGAFG00000018890	cpsf1	96	85.714	Gambusia_affinis
ENSDORG00000006278	Cpsf1	99	78.384	ENSGACG00000008703	cpsf1	97	78.465	Gasterosteus_aculeatus
ENSDORG00000006278	Cpsf1	99	83.931	ENSGAGG00000004276	CPSF1	98	87.657	Gopherus_agassizii
ENSDORG00000006278	Cpsf1	99	96.055	ENSGGOG00000016185	CPSF1	97	96.055	Gorilla_gorilla
ENSDORG00000006278	Cpsf1	99	79.770	ENSHBUG00000018900	cpsf1	96	79.914	Haplochromis_burtoni
ENSDORG00000006278	Cpsf1	99	96.911	ENSHGLG00000016139	CPSF1	97	96.911	Heterocephalus_glaber_female
ENSDORG00000006278	Cpsf1	99	96.839	ENSHGLG00100009750	CPSF1	97	96.839	Heterocephalus_glaber_male
ENSDORG00000006278	Cpsf1	99	77.481	ENSHCOG00000018509	cpsf1	97	77.481	Hippocampus_comes
ENSDORG00000006278	Cpsf1	99	76.681	ENSIPUG00000011259	cpsf1	97	76.600	Ictalurus_punctatus
ENSDORG00000006278	Cpsf1	99	96.214	ENSSTOG00000009957	CPSF1	99	96.214	Ictidomys_tridecemlineatus
ENSDORG00000006278	Cpsf1	99	96.467	ENSJJAG00000023002	Cpsf1	97	96.467	Jaculus_jaculus
ENSDORG00000006278	Cpsf1	90	85.580	ENSKMAG00000001940	cpsf1	96	85.580	Kryptolebias_marmoratus
ENSDORG00000006278	Cpsf1	99	77.563	ENSLBEG00000003601	cpsf1	97	77.817	Labrus_bergylta
ENSDORG00000006278	Cpsf1	83	81.490	ENSLACG00000000233	CPSF1	88	81.490	Latimeria_chalumnae
ENSDORG00000006278	Cpsf1	99	78.183	ENSLOCG00000008484	cpsf1	97	78.326	Lepisosteus_oculatus
ENSDORG00000006278	Cpsf1	99	95.204	ENSLAFG00000022601	CPSF1	100	95.204	Loxodonta_africana
ENSDORG00000006278	Cpsf1	99	95.842	ENSMFAG00000037013	CPSF1	97	95.842	Macaca_fascicularis
ENSDORG00000006278	Cpsf1	99	95.914	ENSMMUG00000007380	CPSF1	97	95.914	Macaca_mulatta
ENSDORG00000006278	Cpsf1	99	96.123	ENSMNEG00000043564	CPSF1	99	96.123	Macaca_nemestrina
ENSDORG00000006278	Cpsf1	99	95.842	ENSMLEG00000043010	CPSF1	97	95.842	Mandrillus_leucophaeus
ENSDORG00000006278	Cpsf1	99	78.179	ENSMAMG00000003803	cpsf1	99	78.352	Mastacembelus_armatus
ENSDORG00000006278	Cpsf1	99	78.298	ENSMZEG00005001168	cpsf1	97	78.443	Maylandia_zebra
ENSDORG00000006278	Cpsf1	99	96.821	ENSMAUG00000003601	Cpsf1	97	96.628	Mesocricetus_auratus
ENSDORG00000006278	Cpsf1	99	96.628	ENSMICG00000015767	CPSF1	97	96.628	Microcebus_murinus
ENSDORG00000006278	Cpsf1	99	96.772	ENSMOCG00000022758	Cpsf1	97	96.772	Microtus_ochrogaster
ENSDORG00000006278	Cpsf1	99	79.325	ENSMMOG00000021245	cpsf1	96	79.325	Mola_mola
ENSDORG00000006278	Cpsf1	99	92.995	ENSMODG00000010755	CPSF1	97	92.995	Monodelphis_domestica
ENSDORG00000006278	Cpsf1	99	77.926	ENSMALG00000020545	cpsf1	97	77.856	Monopterus_albus
ENSDORG00000006278	Cpsf1	99	97.202	MGP_CAROLIEiJ_G0019936	Cpsf1	97	97.202	Mus_caroli
ENSDORG00000006278	Cpsf1	99	97.059	ENSMUSG00000034022	Cpsf1	97	97.059	Mus_musculus
ENSDORG00000006278	Cpsf1	99	97.202	MGP_PahariEiJ_G0019946	Cpsf1	97	97.202	Mus_pahari
ENSDORG00000006278	Cpsf1	99	97.131	MGP_SPRETEiJ_G0020839	Cpsf1	97	97.131	Mus_spretus
ENSDORG00000006278	Cpsf1	96	95.701	ENSMPUG00000006419	CPSF1	93	95.701	Mustela_putorius_furo
ENSDORG00000006278	Cpsf1	99	96.557	ENSNGAG00000022460	Cpsf1	97	96.557	Nannospalax_galili
ENSDORG00000006278	Cpsf1	98	75.506	ENSNBRG00000000813	cpsf1	96	75.506	Neolamprologus_brichardi
ENSDORG00000006278	Cpsf1	85	83.316	ENSNLEG00000010633	-	100	88.426	Nomascus_leucogenys
ENSDORG00000006278	Cpsf1	84	96.512	ENSMEUG00000014922	CPSF1	85	96.512	Notamacropus_eugenii
ENSDORG00000006278	Cpsf1	62	96.429	ENSOPRG00000004693	-	71	96.429	Ochotona_princeps
ENSDORG00000006278	Cpsf1	99	96.915	ENSODEG00000013995	CPSF1	97	96.915	Octodon_degus
ENSDORG00000006278	Cpsf1	99	80.129	ENSONIG00000007676	cpsf1	97	80.273	Oreochromis_niloticus
ENSDORG00000006278	Cpsf1	60	91.429	ENSOANG00000010716	CPSF1	88	91.429	Ornithorhynchus_anatinus
ENSDORG00000006278	Cpsf1	99	78.132	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSDORG00000006278	Cpsf1	99	78.202	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSDORG00000006278	Cpsf1	99	78.116	ENSORLG00015009979	cpsf1	97	77.887	Oryzias_latipes_hsok
ENSDORG00000006278	Cpsf1	99	78.061	ENSOMEG00000011849	cpsf1	97	77.856	Oryzias_melastigma
ENSDORG00000006278	Cpsf1	99	96.559	ENSOGAG00000000315	CPSF1	97	96.559	Otolemur_garnettii
ENSDORG00000006278	Cpsf1	99	96.057	ENSPPAG00000019280	CPSF1	97	96.057	Pan_paniscus
ENSDORG00000006278	Cpsf1	99	96.057	ENSPTRG00000049288	-	97	96.057	Pan_troglodytes
ENSDORG00000006278	Cpsf1	99	94.366	ENSPTRG00000051253	-	97	94.366	Pan_troglodytes
ENSDORG00000006278	Cpsf1	99	95.980	ENSPANG00000015005	CPSF1	99	95.980	Papio_anubis
ENSDORG00000006278	Cpsf1	99	81.066	ENSPKIG00000002582	cpsf1	100	80.349	Paramormyrops_kingsleyae
ENSDORG00000006278	Cpsf1	99	92.924	ENSPCIG00000009035	CPSF1	97	92.924	Phascolarctos_cinereus
ENSDORG00000006278	Cpsf1	99	76.734	ENSPFOG00000012870	cpsf1	97	76.734	Poecilia_formosa
ENSDORG00000006278	Cpsf1	99	76.681	ENSPREG00000016307	cpsf1	97	76.681	Poecilia_reticulata
ENSDORG00000006278	Cpsf1	99	87.599	ENSPPYG00000018973	CPSF1	96	87.599	Pongo_abelii
ENSDORG00000006278	Cpsf1	93	94.886	ENSPCAG00000011541	CPSF1	94	94.886	Procavia_capensis
ENSDORG00000006278	Cpsf1	99	92.688	ENSPCOG00000020001	CPSF1	97	92.688	Propithecus_coquereli
ENSDORG00000006278	Cpsf1	89	98.571	ENSPVAG00000006761	CPSF1	88	98.571	Pteropus_vampyrus
ENSDORG00000006278	Cpsf1	99	78.698	ENSPNYG00000004906	cpsf1	99	78.237	Pundamilia_nyererei
ENSDORG00000006278	Cpsf1	99	75.108	ENSPNAG00000024395	cpsf1	97	75.108	Pygocentrus_nattereri
ENSDORG00000006278	Cpsf1	99	96.987	ENSRNOG00000030705	Cpsf1	97	96.987	Rattus_norvegicus
ENSDORG00000006278	Cpsf1	99	95.914	ENSRBIG00000044907	CPSF1	97	95.914	Rhinopithecus_bieti
ENSDORG00000006278	Cpsf1	99	95.842	ENSRROG00000044861	CPSF1	97	95.842	Rhinopithecus_roxellana
ENSDORG00000006278	Cpsf1	99	95.980	ENSSBOG00000027177	CPSF1	99	95.980	Saimiri_boliviensis_boliviensis
ENSDORG00000006278	Cpsf1	99	92.852	ENSSHAG00000006500	CPSF1	97	92.852	Sarcophilus_harrisii
ENSDORG00000006278	Cpsf1	97	80.422	ENSSFOG00015004606	cpsf1	100	80.277	Scleropages_formosus
ENSDORG00000006278	Cpsf1	99	78.136	ENSSMAG00000020547	cpsf1	97	78.346	Scophthalmus_maximus
ENSDORG00000006278	Cpsf1	98	79.740	ENSSDUG00000001100	cpsf1	96	79.813	Seriola_dumerili
ENSDORG00000006278	Cpsf1	98	80.014	ENSSLDG00000003619	cpsf1	96	79.798	Seriola_lalandi_dorsalis
ENSDORG00000006278	Cpsf1	88	92.724	ENSSARG00000003643	CPSF1	88	92.724	Sorex_araneus
ENSDORG00000006278	Cpsf1	99	87.455	ENSSPUG00000014396	CPSF1	100	87.455	Sphenodon_punctatus
ENSDORG00000006278	Cpsf1	99	78.011	ENSSPAG00000005349	cpsf1	97	78.011	Stegastes_partitus
ENSDORG00000006278	Cpsf1	99	95.674	ENSSSCG00000005906	CPSF1	97	95.552	Sus_scrofa
ENSDORG00000006278	Cpsf1	99	77.747	ENSTRUG00000013134	cpsf1	99	77.747	Takifugu_rubripes
ENSDORG00000006278	Cpsf1	99	78.932	ENSTNIG00000014027	cpsf1	97	78.719	Tetraodon_nigroviridis
ENSDORG00000006278	Cpsf1	76	93.866	ENSTBEG00000001756	CPSF1	90	94.382	Tupaia_belangeri
ENSDORG00000006278	Cpsf1	89	96.891	ENSTTRG00000001937	CPSF1	87	96.891	Tursiops_truncatus
ENSDORG00000006278	Cpsf1	99	96.206	ENSUAMG00000006476	CPSF1	98	96.206	Ursus_americanus
ENSDORG00000006278	Cpsf1	99	78.417	ENSXCOG00000003608	cpsf1	96	78.345	Xiphophorus_couchianus
ENSDORG00000006278	Cpsf1	99	77.945	ENSXMAG00000005798	cpsf1	96	78.017	Xiphophorus_maculatus