EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSDORG00000006894 (Gene tree)
Gene ID
105981290
Gene Symbol
-
Alias
LSM3
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Dipodomys_ordii
Status
putative
Strand
Plus strand
Length
7425 bases
Position
chrKN672358.1:833804-841228
Accession
105981290
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDORP00000020405LSMPF01423.223.9e-2011
ENSDORP00000006460LSMPF01423.225.4e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDORT00000030672-641XM_013010393ENSDORP00000020405102 (aa)XP_012865847A0A1S3EQX2
ENSDORT00000006893-345-ENSDORP00000006460114 (aa)-UPI000BACED66
Gene Model
Click here to download ENSDORG00000006894's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000006894's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDORG00000006894-7434.667ENSDORG00000009422Lsm58234.667
ENSDORG00000006894-7731.707ENSDORG00000001729Snrpd27031.707
ENSDORG00000006894-10080.392ENSDORG00000024490-10080.392
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDORG00000006894-100100.000ENSG00000170860LSM3100100.000Homo_sapiens
ENSDORG00000006894-10095.098ENSAPOG00000018947lsm310095.098Acanthochromis_polyacanthus
ENSDORG00000006894-100100.000ENSAMEG00000009405LSM3100100.000Ailuropoda_melanoleuca
ENSDORG00000006894-10094.118ENSACIG00000004574lsm37194.118Amphilophus_citrinellus
ENSDORG00000006894-10095.098ENSAOCG00000007658lsm310095.098Amphiprion_ocellaris
ENSDORG00000006894-10095.098ENSAPEG00000018621lsm310095.098Amphiprion_percula
ENSDORG00000006894-10095.098ENSATEG00000005153lsm310095.098Anabas_testudineus
ENSDORG00000006894-93100.000ENSAPLG00000014499LSM3100100.000Anas_platyrhynchos
ENSDORG00000006894-10099.020ENSACAG00000013503LSM310099.020Anolis_carolinensis
ENSDORG00000006894-10096.078ENSANAG00000002903-10096.078Aotus_nancymaae
ENSDORG00000006894-100100.000ENSANAG00000034627LSM3100100.000Aotus_nancymaae
ENSDORG00000006894-9595.876ENSACLG00000001726-9495.876Astatotilapia_calliptera
ENSDORG00000006894-10097.059ENSAMXG00000041214lsm310097.059Astyanax_mexicanus
ENSDORG00000006894-94100.000ENSBTAG00000007363LSM3100100.000Bos_taurus
ENSDORG00000006894-10069.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSDORG00000006894-10098.039ENSCAFG00000001760LSM310098.039Canis_familiaris
ENSDORG00000006894-10098.039ENSCAFG00020021584-10098.039Canis_lupus_dingo
ENSDORG00000006894-10091.176ENSCAFG00020016680-10091.176Canis_lupus_dingo
ENSDORG00000006894-10088.785ENSCAFG00020020950-10088.785Canis_lupus_dingo
ENSDORG00000006894-10098.039ENSCAFG00020017266-10098.039Canis_lupus_dingo
ENSDORG00000006894-10097.059ENSCAFG00020026452-10097.059Canis_lupus_dingo
ENSDORG00000006894-100100.000ENSCHIG00000024650LSM3100100.000Capra_hircus
ENSDORG00000006894-9980.198ENSTSYG00000028528-9980.198Carlito_syrichta
ENSDORG00000006894-10099.020ENSTSYG00000005204-10099.020Carlito_syrichta
ENSDORG00000006894-94100.000ENSCAPG00000015760LSM3100100.000Cavia_aperea
ENSDORG00000006894-100100.000ENSCPOG00000034071LSM3100100.000Cavia_porcellus
ENSDORG00000006894-100100.000ENSCCAG00000019503-100100.000Cebus_capucinus
ENSDORG00000006894-100100.000ENSCCAG00000036499-100100.000Cebus_capucinus
ENSDORG00000006894-10080.392ENSCCAG00000032763-10080.392Cebus_capucinus
ENSDORG00000006894-9979.208ENSCATG00000031630-9979.208Cercocebus_atys
ENSDORG00000006894-100100.000ENSCATG00000039421LSM3100100.000Cercocebus_atys
ENSDORG00000006894-100100.000ENSCLAG00000015997LSM3100100.000Chinchilla_lanigera
ENSDORG00000006894-10095.098ENSCSAG00000019525-10095.098Chlorocebus_sabaeus
ENSDORG00000006894-10099.020ENSCPBG00000014531LSM310099.020Chrysemys_picta_bellii
ENSDORG00000006894-10081.731ENSCSAVG00000009542-10081.731Ciona_savignyi
ENSDORG00000006894-100100.000ENSCANG00000033944-100100.000Colobus_angolensis_palliatus
ENSDORG00000006894-10095.098ENSCANG00000018782-10095.098Colobus_angolensis_palliatus
ENSDORG00000006894-10097.059ENSCANG00000038037-10097.059Colobus_angolensis_palliatus
ENSDORG00000006894-10074.757ENSCGRG00001008639-10074.757Cricetulus_griseus_chok1gshd
ENSDORG00000006894-100100.000ENSCGRG00001017598Lsm3100100.000Cricetulus_griseus_chok1gshd
ENSDORG00000006894-9884.000ENSCGRG00001011396-10084.000Cricetulus_griseus_chok1gshd
ENSDORG00000006894-9384.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSDORG00000006894-100100.000ENSCGRG00000016159Lsm3100100.000Cricetulus_griseus_crigri
ENSDORG00000006894-10095.098ENSCSEG00000015071lsm37795.098Cynoglossus_semilaevis
ENSDORG00000006894-10094.118ENSCVAG00000006933lsm310094.118Cyprinodon_variegatus
ENSDORG00000006894-10097.059ENSDARG00000089663lsm310097.059Danio_rerio
ENSDORG00000006894-100100.000ENSDNOG00000030808LSM3100100.000Dasypus_novemcinctus
ENSDORG00000006894-10076.699FBgn0051184LSm310076.699Drosophila_melanogaster
ENSDORG00000006894-100100.000ENSETEG00000016207LSM3100100.000Echinops_telfairi
ENSDORG00000006894-10089.216ENSEBUG00000004943lsm310089.216Eptatretus_burgeri
ENSDORG00000006894-100100.000ENSEASG00005015443LSM3100100.000Equus_asinus_asinus
ENSDORG00000006894-100100.000ENSECAG00000007803LSM3100100.000Equus_caballus
ENSDORG00000006894-10096.078ENSELUG00000018922lsm310096.078Esox_lucius
ENSDORG00000006894-10075.490ENSFCAG00000044344-10075.490Felis_catus
ENSDORG00000006894-100100.000ENSFCAG00000038453LSM3100100.000Felis_catus
ENSDORG00000006894-10099.020ENSFALG00000012644LSM310099.020Ficedula_albicollis
ENSDORG00000006894-100100.000ENSFDAG00000011470LSM3100100.000Fukomys_damarensis
ENSDORG00000006894-10095.098ENSFHEG00000000876lsm310095.098Fundulus_heteroclitus
ENSDORG00000006894-9396.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSDORG00000006894-10095.098ENSGAFG00000013965lsm310095.098Gambusia_affinis
ENSDORG00000006894-10095.098ENSGACG00000003488lsm310095.098Gasterosteus_aculeatus
ENSDORG00000006894-10099.020ENSGAGG00000025707LSM310099.020Gopherus_agassizii
ENSDORG00000006894-100100.000ENSGGOG00000010006LSM3100100.000Gorilla_gorilla
ENSDORG00000006894-10095.098ENSHBUG00000022399lsm310095.098Haplochromis_burtoni
ENSDORG00000006894-10080.392ENSHGLG00000015564-10080.392Heterocephalus_glaber_female
ENSDORG00000006894-100100.000ENSHGLG00000000651LSM3100100.000Heterocephalus_glaber_female
ENSDORG00000006894-100100.000ENSHGLG00100011343LSM3100100.000Heterocephalus_glaber_male
ENSDORG00000006894-10080.392ENSHGLG00100010658-10080.392Heterocephalus_glaber_male
ENSDORG00000006894-10094.118ENSHCOG00000013481lsm310094.118Hippocampus_comes
ENSDORG00000006894-10097.059ENSIPUG00000009207lsm310097.059Ictalurus_punctatus
ENSDORG00000006894-100100.000ENSSTOG00000006842LSM3100100.000Ictidomys_tridecemlineatus
ENSDORG00000006894-100100.000ENSJJAG00000017351Lsm3100100.000Jaculus_jaculus
ENSDORG00000006894-9975.490ENSJJAG00000018311-10075.490Jaculus_jaculus
ENSDORG00000006894-10091.176ENSJJAG00000012797-10091.176Jaculus_jaculus
ENSDORG00000006894-10094.118ENSKMAG00000015182lsm310094.118Kryptolebias_marmoratus
ENSDORG00000006894-9693.878ENSLBEG00000021292lsm310093.878Labrus_bergylta
ENSDORG00000006894-10097.059ENSLOCG00000013560lsm310097.059Lepisosteus_oculatus
ENSDORG00000006894-10099.029ENSLAFG00000023308LSM310099.029Loxodonta_africana
ENSDORG00000006894-100100.000ENSMFAG00000003185LSM3100100.000Macaca_fascicularis
ENSDORG00000006894-9578.351ENSMMUG00000002294-9478.351Macaca_mulatta
ENSDORG00000006894-10077.451ENSMMUG00000043596-10077.451Macaca_mulatta
ENSDORG00000006894-100100.000ENSMMUG00000023126LSM3100100.000Macaca_mulatta
ENSDORG00000006894-100100.000ENSMNEG00000043632LSM3100100.000Macaca_nemestrina
ENSDORG00000006894-9981.188ENSMNEG00000037686-9981.188Macaca_nemestrina
ENSDORG00000006894-100100.000ENSMLEG00000036162LSM3100100.000Mandrillus_leucophaeus
ENSDORG00000006894-10095.098ENSMAMG00000012807lsm310095.098Mastacembelus_armatus
ENSDORG00000006894-10095.098ENSMZEG00005016682lsm37395.098Maylandia_zebra
ENSDORG00000006894-94100.000ENSMGAG00000007776LSM3100100.000Meleagris_gallopavo
ENSDORG00000006894-10085.294ENSMICG00000027821-10085.294Microcebus_murinus
ENSDORG00000006894-10099.020ENSMICG00000032361-10099.020Microcebus_murinus
ENSDORG00000006894-100100.000ENSMOCG00000014269Lsm3100100.000Microtus_ochrogaster
ENSDORG00000006894-10094.118ENSMMOG00000020715lsm310094.118Mola_mola
ENSDORG00000006894-10099.020ENSMODG00000007275LSM310099.020Monodelphis_domestica
ENSDORG00000006894-10095.098ENSMALG00000006485lsm310095.098Monopterus_albus
ENSDORG00000006894-100100.000ENSMUSG00000034192Lsm3100100.000Mus_musculus
ENSDORG00000006894-100100.000MGP_PahariEiJ_G0022402Lsm3100100.000Mus_pahari
ENSDORG00000006894-100100.000MGP_SPRETEiJ_G0029681Lsm3100100.000Mus_spretus
ENSDORG00000006894-9788.889ENSMPUG00000019120-9788.889Mustela_putorius_furo
ENSDORG00000006894-8392.941ENSMPUG00000017256-10092.941Mustela_putorius_furo
ENSDORG00000006894-10092.157ENSMLUG00000024700-10092.157Myotis_lucifugus
ENSDORG00000006894-100100.000ENSMLUG00000010677LSM3100100.000Myotis_lucifugus
ENSDORG00000006894-10074.510ENSNGAG00000013716-10074.510Nannospalax_galili
ENSDORG00000006894-9980.198ENSNGAG00000010207-9980.198Nannospalax_galili
ENSDORG00000006894-100100.000ENSNGAG00000022450Lsm3100100.000Nannospalax_galili
ENSDORG00000006894-10095.098ENSNBRG00000014318lsm310095.098Neolamprologus_brichardi
ENSDORG00000006894-10091.176ENSNLEG00000030229-10091.176Nomascus_leucogenys
ENSDORG00000006894-100100.000ENSNLEG00000005079LSM3100100.000Nomascus_leucogenys
ENSDORG00000006894-10092.157ENSODEG00000019403-10092.157Octodon_degus
ENSDORG00000006894-10098.039ENSODEG00000019158-10098.039Octodon_degus
ENSDORG00000006894-100100.000ENSODEG00000001726LSM3100100.000Octodon_degus
ENSDORG00000006894-10099.020ENSODEG00000019740-10099.020Octodon_degus
ENSDORG00000006894-10095.098ENSONIG00000021369-10095.098Oreochromis_niloticus
ENSDORG00000006894-10095.098ENSONIG00000000370lsm310095.098Oreochromis_niloticus
ENSDORG00000006894-10099.020ENSOANG00000012273LSM310099.020Ornithorhynchus_anatinus
ENSDORG00000006894-10095.098ENSOCUG00000011088-10095.098Oryctolagus_cuniculus
ENSDORG00000006894-100100.000ENSOCUG00000027653-100100.000Oryctolagus_cuniculus
ENSDORG00000006894-10093.137ENSORLG00000025900lsm310093.137Oryzias_latipes
ENSDORG00000006894-10093.137ENSORLG00020007125lsm310093.137Oryzias_latipes_hni
ENSDORG00000006894-10093.137ENSORLG00015002944lsm310093.137Oryzias_latipes_hsok
ENSDORG00000006894-10093.137ENSOMEG00000001915lsm310093.137Oryzias_melastigma
ENSDORG00000006894-100100.000ENSOGAG00000007659-100100.000Otolemur_garnettii
ENSDORG00000006894-9697.959ENSOGAG00000028858-10097.959Otolemur_garnettii
ENSDORG00000006894-10090.196ENSOGAG00000033051-10090.196Otolemur_garnettii
ENSDORG00000006894-10099.029ENSOARG00000000600LSM310099.029Ovis_aries
ENSDORG00000006894-100100.000ENSPPAG00000034074LSM3100100.000Pan_paniscus
ENSDORG00000006894-10099.020ENSPPRG00000020953-10099.020Panthera_pardus
ENSDORG00000006894-9992.079ENSPPRG00000010610-8992.079Panthera_pardus
ENSDORG00000006894-100100.000ENSPPRG00000012912-100100.000Panthera_pardus
ENSDORG00000006894-100100.000ENSPTIG00000003463-100100.000Panthera_tigris_altaica
ENSDORG00000006894-100100.000ENSPTIG00000013072-100100.000Panthera_tigris_altaica
ENSDORG00000006894-100100.000ENSPTRG00000014650LSM3100100.000Pan_troglodytes
ENSDORG00000006894-100100.000ENSPANG00000009378LSM3100100.000Papio_anubis
ENSDORG00000006894-10078.431ENSPANG00000032192-10078.431Papio_anubis
ENSDORG00000006894-10098.039ENSPKIG00000008037lsm39198.039Paramormyrops_kingsleyae
ENSDORG00000006894-10099.020ENSPSIG00000015720LSM310099.020Pelodiscus_sinensis
ENSDORG00000006894-9394.737ENSPMGG00000012103lsm39992.857Periophthalmus_magnuspinnatus
ENSDORG00000006894-100100.000ENSPEMG00000015797Lsm3100100.000Peromyscus_maniculatus_bairdii
ENSDORG00000006894-10083.333ENSPEMG00000020213-10083.333Peromyscus_maniculatus_bairdii
ENSDORG00000006894-10095.098ENSPFOG00000008372lsm310095.098Poecilia_formosa
ENSDORG00000006894-10095.098ENSPLAG00000000563lsm310095.098Poecilia_latipinna
ENSDORG00000006894-10095.098ENSPMEG00000022052lsm310095.098Poecilia_mexicana
ENSDORG00000006894-10095.098ENSPREG00000022485lsm310095.098Poecilia_reticulata
ENSDORG00000006894-100100.000ENSPPYG00000013402LSM3100100.000Pongo_abelii
ENSDORG00000006894-100100.000ENSPCAG00000017077LSM3100100.000Procavia_capensis
ENSDORG00000006894-10099.020ENSPCOG00000016217-10099.020Propithecus_coquereli
ENSDORG00000006894-9477.083ENSPCOG00000014435-9877.083Propithecus_coquereli
ENSDORG00000006894-100100.000ENSPVAG00000016795LSM3100100.000Pteropus_vampyrus
ENSDORG00000006894-10095.098ENSPNYG00000009552lsm37395.098Pundamilia_nyererei
ENSDORG00000006894-10097.059ENSPNAG00000023467lsm310097.059Pygocentrus_nattereri
ENSDORG00000006894-100100.000ENSRNOG00000008733Lsm3100100.000Rattus_norvegicus
ENSDORG00000006894-10083.333ENSRBIG00000043783-10083.333Rhinopithecus_bieti
ENSDORG00000006894-100100.000ENSRBIG00000034399LSM3100100.000Rhinopithecus_bieti
ENSDORG00000006894-100100.000ENSRROG00000033276-100100.000Rhinopithecus_roxellana
ENSDORG00000006894-10089.216ENSRROG00000044047-10089.216Rhinopithecus_roxellana
ENSDORG00000006894-10081.373ENSRROG00000044056-10081.373Rhinopithecus_roxellana
ENSDORG00000006894-10084.314ENSRROG00000039868-10084.314Rhinopithecus_roxellana
ENSDORG00000006894-100100.000ENSSBOG00000024310LSM3100100.000Saimiri_boliviensis_boliviensis
ENSDORG00000006894-10097.059ENSSFOG00015007071lsm310097.059Scleropages_formosus
ENSDORG00000006894-10095.098ENSSMAG00000001818lsm310095.098Scophthalmus_maximus
ENSDORG00000006894-10095.098ENSSDUG00000006040lsm310095.098Seriola_dumerili
ENSDORG00000006894-10095.098ENSSLDG00000006399lsm310095.098Seriola_lalandi_dorsalis
ENSDORG00000006894-57100.000ENSSARG00000005275-100100.000Sorex_araneus
ENSDORG00000006894-10089.216ENSSPUG00000005394LSM310089.216Sphenodon_punctatus
ENSDORG00000006894-93100.000ENSSPUG00000017047-99100.000Sphenodon_punctatus
ENSDORG00000006894-10084.314ENSSPAG00000000934lsm310084.314Stegastes_partitus
ENSDORG00000006894-9577.320ENSSSCG00000023718-9977.320Sus_scrofa
ENSDORG00000006894-100100.000ENSSSCG00000011601LSM3100100.000Sus_scrofa
ENSDORG00000006894-10099.020ENSTGUG00000008327LSM310099.020Taeniopygia_guttata
ENSDORG00000006894-10094.118ENSTRUG00000023175lsm310094.118Takifugu_rubripes
ENSDORG00000006894-10094.118ENSTNIG00000005589lsm310094.118Tetraodon_nigroviridis
ENSDORG00000006894-10090.196ENSTBEG00000001050-9990.196Tupaia_belangeri
ENSDORG00000006894-100100.000ENSTTRG00000011197LSM3100100.000Tursiops_truncatus
ENSDORG00000006894-100100.000ENSUAMG00000017250-100100.000Ursus_americanus
ENSDORG00000006894-100100.000ENSUMAG00000015905LSM3100100.000Ursus_maritimus
ENSDORG00000006894-93100.000ENSVPAG00000010709LSM3100100.000Vicugna_pacos
ENSDORG00000006894-10094.118ENSVVUG00000005684-10094.118Vulpes_vulpes
ENSDORG00000006894-10091.176ENSVVUG00000024228-10091.176Vulpes_vulpes
ENSDORG00000006894-10095.098ENSVVUG00000006481-10095.098Vulpes_vulpes
ENSDORG00000006894-10096.078ENSVVUG00000007332-9196.078Vulpes_vulpes
ENSDORG00000006894-10095.098ENSVVUG00000029294-10095.098Vulpes_vulpes
ENSDORG00000006894-10098.039ENSXETG00000011534lsm310098.039Xenopus_tropicalis
ENSDORG00000006894-10095.098ENSXCOG00000017432LSM310095.098Xiphophorus_couchianus
ENSDORG00000006894-10095.098ENSXMAG00000009151lsm310095.098Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us