EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000007082 (Gene tree)
Gene ID: 105985379
Gene Symbol: Smn1
Alias: SMN
Full Name: survival motor neuron protein-like
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 17887 bases
Position: chrKN672374.1:15606444-15624330
Accession: 105985379
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000019803	TUDOR	PF00567.24	0.0002	1	1
ENSDORP00000006637	TUDOR	PF00567.24	0.0002	1	1
ENSDORP00000019803	SMN	PF06003.12	2.8e-86	1	1
ENSDORP00000006637	SMN	PF06003.12	3.8e-82	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000024289	-	1161	XM_013015900	ENSDORP00000019803	268 (aa)	XP_012871354	UPI000BAD28F6
ENSDORT00000034101	-	129	-	ENSDORP00000023809	43 (aa)	-	UPI000BAD1962
ENSDORT00000007081	-	801	-	ENSDORP00000006637	266 (aa)	-	UPI000BAD262D

Gene Model

Click here to download ENSDORG00000007082's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000007082's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000007082	Smn1	99	78.351	ENSG00000172062	SMN1	99	83.688	Homo_sapiens
ENSDORG00000007082	Smn1	99	78.351	ENSG00000205571	SMN2	99	83.688	Homo_sapiens
ENSDORG00000007082	Smn1	90	44.528	ENSAPOG00000011324	smn1	94	43.116	Acanthochromis_polyacanthus
ENSDORG00000007082	Smn1	96	78.648	ENSAMEG00000003316	-	93	78.648	Ailuropoda_melanoleuca
ENSDORG00000007082	Smn1	89	41.985	ENSACIG00000019772	-	97	43.243	Amphilophus_citrinellus
ENSDORG00000007082	Smn1	90	44.151	ENSAOCG00000024444	smn1	94	43.116	Amphiprion_ocellaris
ENSDORG00000007082	Smn1	90	44.528	ENSAPEG00000016504	smn1	94	43.478	Amphiprion_percula
ENSDORG00000007082	Smn1	92	45.185	ENSATEG00000002182	smn1	80	45.660	Anabas_testudineus
ENSDORG00000007082	Smn1	74	56.061	ENSAPLG00000010912	-	97	53.731	Anas_platyrhynchos
ENSDORG00000007082	Smn1	99	47.973	ENSACAG00000010017	-	95	49.281	Anolis_carolinensis
ENSDORG00000007082	Smn1	99	82.156	ENSANAG00000032133	-	99	82.156	Aotus_nancymaae
ENSDORG00000007082	Smn1	92	41.985	ENSACLG00000007308	smn1	89	45.896	Astatotilapia_calliptera
ENSDORG00000007082	Smn1	91	43.077	ENSAMXG00000013884	smn1	94	42.146	Astyanax_mexicanus
ENSDORG00000007082	Smn1	98	73.214	ENSBTAG00000005743	SMN2	97	74.286	Bos_taurus
ENSDORG00000007082	Smn1	99	76.370	ENSCJAG00000016290	-	99	78.169	Callithrix_jacchus
ENSDORG00000007082	Smn1	95	79.211	ENSCAFG00000007812	SMN	97	78.648	Canis_familiaris
ENSDORG00000007082	Smn1	94	79.182	ENSCAFG00020019229	-	90	78.571	Canis_lupus_dingo
ENSDORG00000007082	Smn1	95	74.823	ENSCHIG00000015559	-	95	74.823	Capra_hircus
ENSDORG00000007082	Smn1	99	77.855	ENSTSYG00000012058	-	99	84.173	Carlito_syrichta
ENSDORG00000007082	Smn1	82	65.487	ENSCAPG00000011021	-	100	68.142	Cavia_aperea
ENSDORG00000007082	Smn1	99	72.696	ENSCPOG00000036973	-	100	74.403	Cavia_porcellus
ENSDORG00000007082	Smn1	99	71.959	ENSCPOG00000012328	-	100	73.986	Cavia_porcellus
ENSDORG00000007082	Smn1	99	76.897	ENSCCAG00000018127	-	99	80.714	Cebus_capucinus
ENSDORG00000007082	Smn1	99	79.038	ENSCATG00000037002	-	99	82.979	Cercocebus_atys
ENSDORG00000007082	Smn1	99	71.044	ENSCLAG00000000284	-	100	71.044	Chinchilla_lanigera
ENSDORG00000007082	Smn1	99	80.412	ENSCSAG00000015688	-	99	80.412	Chlorocebus_sabaeus
ENSDORG00000007082	Smn1	84	70.306	ENSCHOG00000007346	-	57	77.778	Choloepus_hoffmanni
ENSDORG00000007082	Smn1	97	53.405	ENSCPBG00000010968	-	87	57.143	Chrysemys_picta_bellii
ENSDORG00000007082	Smn1	99	80.623	ENSCANG00000038242	-	99	84.892	Colobus_angolensis_palliatus
ENSDORG00000007082	Smn1	97	74.194	ENSCANG00000033324	-	95	72.760	Colobus_angolensis_palliatus
ENSDORG00000007082	Smn1	99	76.109	ENSCGRG00001017959	-	100	76.109	Cricetulus_griseus_chok1gshd
ENSDORG00000007082	Smn1	99	70.522	ENSCGRG00001016998	-	100	71.269	Cricetulus_griseus_chok1gshd
ENSDORG00000007082	Smn1	99	76.109	ENSCGRG00000007698	Smn1	100	76.109	Cricetulus_griseus_crigri
ENSDORG00000007082	Smn1	92	37.456	ENSCSEG00000015227	smn1	94	43.015	Cynoglossus_semilaevis
ENSDORG00000007082	Smn1	91	43.590	ENSCVAG00000007498	smn1	94	42.007	Cyprinodon_variegatus
ENSDORG00000007082	Smn1	92	44.361	ENSDARG00000018494	smn1	96	42.456	Danio_rerio
ENSDORG00000007082	Smn1	80	60.352	ENSDNOG00000045949	-	92	61.682	Dasypus_novemcinctus
ENSDORG00000007082	Smn1	90	82.988	ENSDNOG00000007283	-	100	82.988	Dasypus_novemcinctus
ENSDORG00000007082	Smn1	72	61.905	ENSETEG00000001406	-	88	59.563	Echinops_telfairi
ENSDORG00000007082	Smn1	85	79.221	ENSEASG00005018000	-	81	79.654	Equus_asinus_asinus
ENSDORG00000007082	Smn1	95	77.936	ENSECAG00000015215	-	97	78.292	Equus_caballus
ENSDORG00000007082	Smn1	84	76.211	ENSEEUG00000015777	-	91	76.211	Erinaceus_europaeus
ENSDORG00000007082	Smn1	92	47.212	ENSELUG00000018067	smn1	92	42.857	Esox_lucius
ENSDORG00000007082	Smn1	99	76.792	ENSFCAG00000028292	SMN	96	83.217	Felis_catus
ENSDORG00000007082	Smn1	89	56.098	ENSFALG00000012320	-	85	53.061	Ficedula_albicollis
ENSDORG00000007082	Smn1	99	72.054	ENSFDAG00000017683	-	100	73.401	Fukomys_damarensis
ENSDORG00000007082	Smn1	60	43.503	ENSFHEG00000018508	smn1	93	43.774	Fundulus_heteroclitus
ENSDORG00000007082	Smn1	94	44.151	ENSGMOG00000017279	smn1	91	40.840	Gadus_morhua
ENSDORG00000007082	Smn1	90	54.826	ENSGALG00000002430	SMN	92	53.101	Gallus_gallus
ENSDORG00000007082	Smn1	91	44.400	ENSGAFG00000009501	smn1	93	43.284	Gambusia_affinis
ENSDORG00000007082	Smn1	90	45.211	ENSGACG00000010584	smn1	91	41.818	Gasterosteus_aculeatus
ENSDORG00000007082	Smn1	95	53.480	ENSGAGG00000011374	-	94	52.206	Gopherus_agassizii
ENSDORG00000007082	Smn1	97	68.116	ENSGGOG00000003872	-	100	64.855	Gorilla_gorilla
ENSDORG00000007082	Smn1	66	73.057	ENSGGOG00000026704	-	91	73.057	Gorilla_gorilla
ENSDORG00000007082	Smn1	90	43.243	ENSHBUG00000013987	smn1	94	43.704	Haplochromis_burtoni
ENSDORG00000007082	Smn1	99	70.890	ENSHGLG00000001905	-	100	70.890	Heterocephalus_glaber_female
ENSDORG00000007082	Smn1	99	70.707	ENSHGLG00000001018	-	100	72.391	Heterocephalus_glaber_female
ENSDORG00000007082	Smn1	99	70.707	ENSHGLG00100011252	-	100	72.391	Heterocephalus_glaber_male
ENSDORG00000007082	Smn1	97	70.397	ENSHGLG00100018676	-	100	70.000	Heterocephalus_glaber_male
ENSDORG00000007082	Smn1	91	43.123	ENSHCOG00000017136	smn1	87	42.366	Hippocampus_comes
ENSDORG00000007082	Smn1	93	44.000	ENSIPUG00000012580	smn1	86	42.910	Ictalurus_punctatus
ENSDORG00000007082	Smn1	97	80.727	ENSSTOG00000012288	-	100	80.727	Ictidomys_tridecemlineatus
ENSDORG00000007082	Smn1	56	58.667	ENSJJAG00000014853	-	68	78.846	Jaculus_jaculus
ENSDORG00000007082	Smn1	90	44.815	ENSKMAG00000007239	smn1	93	44.867	Kryptolebias_marmoratus
ENSDORG00000007082	Smn1	90	43.866	ENSLBEG00000022550	smn1	94	43.110	Labrus_bergylta
ENSDORG00000007082	Smn1	75	37.037	ENSLACG00000009808	-	74	37.719	Latimeria_chalumnae
ENSDORG00000007082	Smn1	90	47.510	ENSLOCG00000011339	smn1	95	44.565	Lepisosteus_oculatus
ENSDORG00000007082	Smn1	99	75.000	ENSLAFG00000003425	-	93	75.439	Loxodonta_africana
ENSDORG00000007082	Smn1	99	74.914	ENSMFAG00000008812	-	99	74.914	Macaca_fascicularis
ENSDORG00000007082	Smn1	99	80.756	ENSMFAG00000031523	SMN1	99	85.106	Macaca_fascicularis
ENSDORG00000007082	Smn1	99	80.756	ENSMMUG00000020214	SMN1	99	85.106	Macaca_mulatta
ENSDORG00000007082	Smn1	99	75.258	ENSMMUG00000030594	-	99	75.258	Macaca_mulatta
ENSDORG00000007082	Smn1	99	80.412	ENSMNEG00000035094	-	99	84.397	Macaca_nemestrina
ENSDORG00000007082	Smn1	81	74.091	ENSMNEG00000036423	-	99	64.794	Macaca_nemestrina
ENSDORG00000007082	Smn1	99	80.069	ENSMLEG00000041902	-	99	84.397	Mandrillus_leucophaeus
ENSDORG00000007082	Smn1	92	44.238	ENSMAMG00000011034	smn1	94	44.326	Mastacembelus_armatus
ENSDORG00000007082	Smn1	90	42.857	ENSMZEG00005013634	smn1	94	43.333	Maylandia_zebra
ENSDORG00000007082	Smn1	73	58.081	ENSMGAG00000008889	-	95	55.838	Meleagris_gallopavo
ENSDORG00000007082	Smn1	99	74.744	ENSMAUG00000010262	Smn1	100	74.744	Mesocricetus_auratus
ENSDORG00000007082	Smn1	99	65.646	ENSMICG00000034708	-	91	75.214	Microcebus_murinus
ENSDORG00000007082	Smn1	98	76.619	ENSMOCG00000017833	Smn1	100	74.744	Microtus_ochrogaster
ENSDORG00000007082	Smn1	92	40.377	ENSMMOG00000005504	smn1	95	45.660	Mola_mola
ENSDORG00000007082	Smn1	97	61.404	ENSMODG00000001436	-	96	62.191	Monodelphis_domestica
ENSDORG00000007082	Smn1	91	41.455	ENSMALG00000008025	smn1	95	42.182	Monopterus_albus
ENSDORG00000007082	Smn1	99	76.190	MGP_CAROLIEiJ_G0018836	Smn1	100	76.531	Mus_caroli
ENSDORG00000007082	Smn1	99	76.531	ENSMUSG00000021645	Smn1	100	76.871	Mus_musculus
ENSDORG00000007082	Smn1	99	73.288	MGP_PahariEiJ_G0015911	Smn1	100	73.288	Mus_pahari
ENSDORG00000007082	Smn1	99	76.190	MGP_SPRETEiJ_G0019718	Smn1	100	76.531	Mus_spretus
ENSDORG00000007082	Smn1	97	79.928	ENSMPUG00000014470	-	95	80.224	Mustela_putorius_furo
ENSDORG00000007082	Smn1	96	77.163	ENSMLUG00000010603	-	97	76.821	Myotis_lucifugus
ENSDORG00000007082	Smn1	99	76.109	ENSNGAG00000019833	Smn1	100	76.109	Nannospalax_galili
ENSDORG00000007082	Smn1	90	43.411	ENSNBRG00000023000	smn1	93	45.018	Neolamprologus_brichardi
ENSDORG00000007082	Smn1	99	78.351	ENSNLEG00000004454	-	99	83.688	Nomascus_leucogenys
ENSDORG00000007082	Smn1	84	65.487	ENSMEUG00000011393	-	99	66.960	Notamacropus_eugenii
ENSDORG00000007082	Smn1	84	76.087	ENSOPRG00000002015	-	91	76.522	Ochotona_princeps
ENSDORG00000007082	Smn1	97	73.646	ENSODEG00000015976	-	97	73.646	Octodon_degus
ENSDORG00000007082	Smn1	91	43.846	ENSONIG00000011799	smn1	95	42.652	Oreochromis_niloticus
ENSDORG00000007082	Smn1	93	57.091	ENSOANG00000001626	-	96	58.182	Ornithorhynchus_anatinus
ENSDORG00000007082	Smn1	99	84.191	ENSOCUG00000025183	-	100	84.615	Oryctolagus_cuniculus
ENSDORG00000007082	Smn1	99	75.342	ENSOCUG00000017097	-	99	76.027	Oryctolagus_cuniculus
ENSDORG00000007082	Smn1	99	71.622	ENSOCUG00000026649	-	99	74.324	Oryctolagus_cuniculus
ENSDORG00000007082	Smn1	90	44.569	ENSORLG00000010552	smn1	94	41.544	Oryzias_latipes
ENSDORG00000007082	Smn1	90	45.098	ENSORLG00020007936	smn1	94	43.071	Oryzias_latipes_hni
ENSDORG00000007082	Smn1	53	47.097	ENSORLG00015022425	smn1	94	41.993	Oryzias_latipes_hsok
ENSDORG00000007082	Smn1	52	45.455	ENSOMEG00000007824	smn1	93	44.891	Oryzias_melastigma
ENSDORG00000007082	Smn1	93	70.111	ENSOGAG00000031414	-	94	69.742	Otolemur_garnettii
ENSDORG00000007082	Smn1	90	81.070	ENSOARG00000005425	-	88	81.070	Ovis_aries
ENSDORG00000007082	Smn1	99	78.007	ENSPPAG00000036640	-	99	83.688	Pan_paniscus
ENSDORG00000007082	Smn1	99	77.133	ENSPPRG00000005575	-	96	83.916	Panthera_pardus
ENSDORG00000007082	Smn1	99	76.871	ENSPTIG00000007745	-	96	83.333	Panthera_tigris_altaica
ENSDORG00000007082	Smn1	99	77.551	ENSPTRG00000016955	-	99	81.944	Pan_troglodytes
ENSDORG00000007082	Smn1	98	75.000	ENSPANG00000000253	-	98	75.347	Papio_anubis
ENSDORG00000007082	Smn1	99	80.756	ENSPANG00000013601	-	99	85.106	Papio_anubis
ENSDORG00000007082	Smn1	90	41.791	ENSPKIG00000011096	smn1	91	45.525	Paramormyrops_kingsleyae
ENSDORG00000007082	Smn1	88	56.904	ENSPSIG00000014787	-	75	54.430	Pelodiscus_sinensis
ENSDORG00000007082	Smn1	91	43.396	ENSPMGG00000012285	smn1	94	42.366	Periophthalmus_magnuspinnatus
ENSDORG00000007082	Smn1	72	42.000	ENSPMAG00000005004	smn1	67	43.902	Petromyzon_marinus
ENSDORG00000007082	Smn1	97	62.456	ENSPCIG00000025764	-	98	63.251	Phascolarctos_cinereus
ENSDORG00000007082	Smn1	90	44.906	ENSPFOG00000007786	smn1	93	43.939	Poecilia_formosa
ENSDORG00000007082	Smn1	90	45.283	ENSPLAG00000012071	smn1	93	44.318	Poecilia_latipinna
ENSDORG00000007082	Smn1	90	44.906	ENSPMEG00000017085	smn1	93	43.939	Poecilia_mexicana
ENSDORG00000007082	Smn1	91	45.817	ENSPREG00000005824	smn1	93	44.569	Poecilia_reticulata
ENSDORG00000007082	Smn1	84	53.125	ENSPPYG00000019189	-	87	52.232	Pongo_abelii
ENSDORG00000007082	Smn1	89	83.817	ENSPPYG00000015533	-	87	83.817	Pongo_abelii
ENSDORG00000007082	Smn1	90	76.923	ENSPCAG00000004187	-	91	75.709	Procavia_capensis
ENSDORG00000007082	Smn1	90	65.854	ENSPCOG00000022307	-	81	78.378	Propithecus_coquereli
ENSDORG00000007082	Smn1	99	80.137	ENSPVAG00000005977	-	100	80.137	Pteropus_vampyrus
ENSDORG00000007082	Smn1	90	43.411	ENSPNYG00000014148	smn1	93	45.018	Pundamilia_nyererei
ENSDORG00000007082	Smn1	91	43.243	ENSPNAG00000014007	smn1	81	43.295	Pygocentrus_nattereri
ENSDORG00000007082	Smn1	99	74.490	ENSRNOG00000018067	Smn1	100	74.490	Rattus_norvegicus
ENSDORG00000007082	Smn1	99	80.069	ENSRBIG00000037052	-	99	83.688	Rhinopithecus_bieti
ENSDORG00000007082	Smn1	97	66.065	ENSRBIG00000036775	-	95	64.286	Rhinopithecus_bieti
ENSDORG00000007082	Smn1	99	80.069	ENSRROG00000039399	-	99	83.688	Rhinopithecus_roxellana
ENSDORG00000007082	Smn1	99	63.699	ENSRROG00000031088	-	99	64.726	Rhinopithecus_roxellana
ENSDORG00000007082	Smn1	81	76.106	ENSSBOG00000020112	-	85	70.902	Saimiri_boliviensis_boliviensis
ENSDORG00000007082	Smn1	99	76.471	ENSSBOG00000011665	-	99	80.576	Saimiri_boliviensis_boliviensis
ENSDORG00000007082	Smn1	100	60.884	ENSSHAG00000001499	-	94	63.604	Sarcophilus_harrisii
ENSDORG00000007082	Smn1	90	43.774	ENSSFOG00015015507	smn1	92	42.857	Scleropages_formosus
ENSDORG00000007082	Smn1	90	41.852	ENSSMAG00000007922	smn1	94	42.545	Scophthalmus_maximus
ENSDORG00000007082	Smn1	90	42.910	ENSSDUG00000018533	smn1	94	42.960	Seriola_dumerili
ENSDORG00000007082	Smn1	90	43.071	ENSSLDG00000021135	smn1	94	43.321	Seriola_lalandi_dorsalis
ENSDORG00000007082	Smn1	90	56.538	ENSSPUG00000000373	-	93	54.851	Sphenodon_punctatus
ENSDORG00000007082	Smn1	90	43.130	ENSSPAG00000004345	smn1	94	42.125	Stegastes_partitus
ENSDORG00000007082	Smn1	99	85.130	ENSSSCG00000016970	-	100	85.130	Sus_scrofa
ENSDORG00000007082	Smn1	95	58.633	ENSSSCG00000029127	-	94	58.214	Sus_scrofa
ENSDORG00000007082	Smn1	79	54.930	ENSSSCG00000033865	-	95	56.944	Sus_scrofa
ENSDORG00000007082	Smn1	97	52.313	ENSTGUG00000001548	-	96	53.759	Taeniopygia_guttata
ENSDORG00000007082	Smn1	53	43.949	ENSTRUG00000000736	smn	96	37.638	Takifugu_rubripes
ENSDORG00000007082	Smn1	91	41.509	ENSTNIG00000009892	smn1	95	40.146	Tetraodon_nigroviridis
ENSDORG00000007082	Smn1	62	71.585	ENSTBEG00000002399	-	88	71.585	Tupaia_belangeri
ENSDORG00000007082	Smn1	96	73.665	ENSTTRG00000005080	-	96	74.377	Tursiops_truncatus
ENSDORG00000007082	Smn1	62	73.770	ENSUAMG00000024947	-	67	73.770	Ursus_americanus
ENSDORG00000007082	Smn1	96	79.359	ENSUMAG00000007842	-	72	79.359	Ursus_maritimus
ENSDORG00000007082	Smn1	93	66.415	ENSVPAG00000009887	-	96	66.415	Vicugna_pacos
ENSDORG00000007082	Smn1	95	79.211	ENSVVUG00000006934	-	97	78.648	Vulpes_vulpes
ENSDORG00000007082	Smn1	92	51.481	ENSXETG00000018189	smn2	96	47.735	Xenopus_tropicalis
ENSDORG00000007082	Smn1	96	34.182	ENSXETG00000004912	-	52	36.129	Xenopus_tropicalis
ENSDORG00000007082	Smn1	91	45.018	ENSXMAG00000001521	smn1	92	45.420	Xiphophorus_maculatus