EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000007331 (Gene tree)
Gene ID: 105985254
Gene Symbol: Smg7
Alias: 9430023P16Rik
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 67715 bases
Position: chrKN672373.1:2514196-2581910
Accession: 105985254
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000006876	EST1	PF10374.9	1e-24	1	1
ENSDORP00000019482	EST1	PF10374.9	1e-24	1	1
ENSDORP00000006876	EST1_DNA_bind	PF10373.9	2.9e-52	1	1
ENSDORP00000019482	EST1_DNA_bind	PF10373.9	3e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000007332	-	3420	XM_013015713	ENSDORP00000006876	1139 (aa)	XP_012871167	UPI000BACFE92
ENSDORT00000029117	-	3444	XM_013015712	ENSDORP00000019482	1147 (aa)	XP_012871166	UPI000BACFEEA

Gene Model

Click here to download ENSDORG00000007331's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000007331's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000007331	Smg7	100	96.606	ENSG00000116698	SMG7	100	96.958	Homo_sapiens
ENSDORG00000007331	Smg7	85	71.407	ENSAPOG00000009611	smg7	95	71.407	Acanthochromis_polyacanthus
ENSDORG00000007331	Smg7	96	91.528	ENSAMEG00000002357	SMG7	100	91.441	Ailuropoda_melanoleuca
ENSDORG00000007331	Smg7	91	67.932	ENSACIG00000015152	smg7	100	59.949	Amphilophus_citrinellus
ENSDORG00000007331	Smg7	99	64.551	ENSAOCG00000013538	smg7	99	65.074	Amphiprion_ocellaris
ENSDORG00000007331	Smg7	99	64.415	ENSAPEG00000007851	smg7	99	64.938	Amphiprion_percula
ENSDORG00000007331	Smg7	99	62.131	ENSATEG00000006931	smg7	99	62.869	Anabas_testudineus
ENSDORG00000007331	Smg7	100	81.140	ENSAPLG00000015811	SMG7	100	80.972	Anas_platyrhynchos
ENSDORG00000007331	Smg7	100	83.459	ENSACAG00000014989	SMG7	100	83.793	Anolis_carolinensis
ENSDORG00000007331	Smg7	97	96.014	ENSANAG00000028114	SMG7	100	92.418	Aotus_nancymaae
ENSDORG00000007331	Smg7	99	63.584	ENSACLG00000022079	smg7	99	64.599	Astatotilapia_calliptera
ENSDORG00000007331	Smg7	99	66.415	ENSAMXG00000020809	smg7	99	66.695	Astyanax_mexicanus
ENSDORG00000007331	Smg7	100	95.126	ENSBTAG00000008003	SMG7	98	95.126	Bos_taurus
ENSDORG00000007331	Smg7	100	95.997	ENSCJAG00000005135	SMG7	99	95.997	Callithrix_jacchus
ENSDORG00000007331	Smg7	100	96.171	ENSCAFG00000013276	SMG7	98	96.171	Canis_familiaris
ENSDORG00000007331	Smg7	100	96.171	ENSCAFG00020015475	SMG7	98	96.171	Canis_lupus_dingo
ENSDORG00000007331	Smg7	99	95.146	ENSCHIG00000018192	SMG7	99	95.146	Capra_hircus
ENSDORG00000007331	Smg7	100	96.258	ENSTSYG00000002667	SMG7	98	96.258	Carlito_syrichta
ENSDORG00000007331	Smg7	100	96.171	ENSCPOG00000008906	SMG7	99	96.171	Cavia_porcellus
ENSDORG00000007331	Smg7	100	88.374	ENSCCAG00000028596	SMG7	100	92.227	Cebus_capucinus
ENSDORG00000007331	Smg7	100	96.780	ENSCATG00000011063	SMG7	98	96.780	Cercocebus_atys
ENSDORG00000007331	Smg7	100	95.822	ENSCLAG00000010751	SMG7	100	95.822	Chinchilla_lanigera
ENSDORG00000007331	Smg7	100	96.606	ENSCSAG00000012654	SMG7	98	96.606	Chlorocebus_sabaeus
ENSDORG00000007331	Smg7	92	87.488	ENSCHOG00000010522	SMG7	93	87.870	Choloepus_hoffmanni
ENSDORG00000007331	Smg7	100	87.815	ENSCPBG00000015724	SMG7	100	87.647	Chrysemys_picta_bellii
ENSDORG00000007331	Smg7	96	92.664	ENSCANG00000015680	SMG7	100	92.664	Colobus_angolensis_palliatus
ENSDORG00000007331	Smg7	100	95.300	ENSCGRG00001013705	Smg7	100	95.267	Cricetulus_griseus_chok1gshd
ENSDORG00000007331	Smg7	100	95.300	ENSCGRG00000018401	Smg7	100	95.300	Cricetulus_griseus_crigri
ENSDORG00000007331	Smg7	92	69.500	ENSCVAG00000011842	smg7	100	62.717	Cyprinodon_variegatus
ENSDORG00000007331	Smg7	99	65.945	ENSDARG00000060767	smg7	99	65.917	Danio_rerio
ENSDORG00000007331	Smg7	97	94.746	ENSETEG00000002654	SMG7	100	94.746	Echinops_telfairi
ENSDORG00000007331	Smg7	100	96.845	ENSEASG00005006524	SMG7	100	96.845	Equus_asinus_asinus
ENSDORG00000007331	Smg7	100	96.757	ENSECAG00000004313	SMG7	100	96.757	Equus_caballus
ENSDORG00000007331	Smg7	97	94.480	ENSEEUG00000002024	SMG7	94	94.480	Erinaceus_europaeus
ENSDORG00000007331	Smg7	99	64.798	ENSELUG00000010293	smg7	99	65.210	Esox_lucius
ENSDORG00000007331	Smg7	100	96.319	ENSFCAG00000010900	SMG7	100	96.433	Felis_catus
ENSDORG00000007331	Smg7	98	82.313	ENSFALG00000003047	SMG7	100	82.228	Ficedula_albicollis
ENSDORG00000007331	Smg7	99	95.347	ENSFDAG00000012121	SMG7	99	95.722	Fukomys_damarensis
ENSDORG00000007331	Smg7	99	60.531	ENSFHEG00000011073	smg7	99	60.000	Fundulus_heteroclitus
ENSDORG00000007331	Smg7	85	67.445	ENSGMOG00000004916	smg7	90	67.445	Gadus_morhua
ENSDORG00000007331	Smg7	100	81.575	ENSGALG00000004667	SMG7	100	81.407	Gallus_gallus
ENSDORG00000007331	Smg7	99	61.014	ENSGAFG00000019000	smg7	99	60.515	Gambusia_affinis
ENSDORG00000007331	Smg7	97	64.073	ENSGACG00000001634	smg7	99	64.629	Gasterosteus_aculeatus
ENSDORG00000007331	Smg7	100	96.606	ENSGGOG00000002342	SMG7	98	96.606	Gorilla_gorilla
ENSDORG00000007331	Smg7	99	64.268	ENSHBUG00000003726	smg7	97	71.574	Haplochromis_burtoni
ENSDORG00000007331	Smg7	98	95.989	ENSHGLG00000009353	SMG7	100	95.989	Heterocephalus_glaber_female
ENSDORG00000007331	Smg7	98	94.296	ENSHGLG00100009637	-	100	94.296	Heterocephalus_glaber_male
ENSDORG00000007331	Smg7	100	88.168	ENSHGLG00100004878	-	100	88.168	Heterocephalus_glaber_male
ENSDORG00000007331	Smg7	99	67.422	ENSIPUG00000016997	smg7	99	67.422	Ictalurus_punctatus
ENSDORG00000007331	Smg7	100	96.693	ENSSTOG00000000401	SMG7	100	96.693	Ictidomys_tridecemlineatus
ENSDORG00000007331	Smg7	100	94.741	ENSJJAG00000012351	Smg7	100	94.741	Jaculus_jaculus
ENSDORG00000007331	Smg7	97	58.206	ENSKMAG00000004900	smg7	100	58.586	Kryptolebias_marmoratus
ENSDORG00000007331	Smg7	99	62.479	ENSLBEG00000002983	smg7	99	62.396	Labrus_bergylta
ENSDORG00000007331	Smg7	99	74.913	ENSLACG00000000972	SMG7	99	74.891	Latimeria_chalumnae
ENSDORG00000007331	Smg7	99	67.057	ENSLOCG00000002010	smg7	99	67.140	Lepisosteus_oculatus
ENSDORG00000007331	Smg7	100	96.084	ENSLAFG00000008186	SMG7	100	96.084	Loxodonta_africana
ENSDORG00000007331	Smg7	100	96.693	ENSMFAG00000031653	SMG7	100	96.670	Macaca_fascicularis
ENSDORG00000007331	Smg7	100	96.780	ENSMMUG00000018458	SMG7	98	96.780	Macaca_mulatta
ENSDORG00000007331	Smg7	100	88.880	ENSMNEG00000034798	SMG7	100	92.751	Macaca_nemestrina
ENSDORG00000007331	Smg7	100	96.780	ENSMLEG00000037170	SMG7	98	96.780	Mandrillus_leucophaeus
ENSDORG00000007331	Smg7	88	63.417	ENSMAMG00000018733	smg7	84	64.750	Mastacembelus_armatus
ENSDORG00000007331	Smg7	99	64.033	ENSMZEG00005015247	smg7	99	64.516	Maylandia_zebra
ENSDORG00000007331	Smg7	97	81.169	ENSMGAG00000001561	SMG7	98	80.997	Meleagris_gallopavo
ENSDORG00000007331	Smg7	100	95.735	ENSMAUG00000019484	Smg7	100	95.735	Mesocricetus_auratus
ENSDORG00000007331	Smg7	100	96.693	ENSMICG00000007145	SMG7	100	96.693	Microcebus_murinus
ENSDORG00000007331	Smg7	100	95.474	ENSMOCG00000020748	Smg7	100	95.474	Microtus_ochrogaster
ENSDORG00000007331	Smg7	99	59.967	ENSMMOG00000001524	smg7	99	60.250	Mola_mola
ENSDORG00000007331	Smg7	92	84.455	ENSMODG00000007139	SMG7	99	84.455	Monodelphis_domestica
ENSDORG00000007331	Smg7	96	68.657	ENSMALG00000000061	smg7	93	68.657	Monopterus_albus
ENSDORG00000007331	Smg7	100	95.213	MGP_CAROLIEiJ_G0014704	Smg7	100	94.865	Mus_caroli
ENSDORG00000007331	Smg7	100	95.126	ENSMUSG00000042772	Smg7	100	95.126	Mus_musculus
ENSDORG00000007331	Smg7	100	95.126	MGP_PahariEiJ_G0027940	Smg7	100	95.126	Mus_pahari
ENSDORG00000007331	Smg7	100	95.213	MGP_SPRETEiJ_G0015511	Smg7	100	95.213	Mus_spretus
ENSDORG00000007331	Smg7	98	95.900	ENSMPUG00000011732	SMG7	97	96.078	Mustela_putorius_furo
ENSDORG00000007331	Smg7	99	95.587	ENSMLUG00000015417	SMG7	99	95.587	Myotis_lucifugus
ENSDORG00000007331	Smg7	100	95.735	ENSNGAG00000009836	Smg7	100	95.735	Nannospalax_galili
ENSDORG00000007331	Smg7	98	57.322	ENSNBRG00000024343	smg7	98	69.524	Neolamprologus_brichardi
ENSDORG00000007331	Smg7	100	96.780	ENSNLEG00000018018	SMG7	98	96.780	Nomascus_leucogenys
ENSDORG00000007331	Smg7	77	85.149	ENSMEUG00000004681	SMG7	77	85.356	Notamacropus_eugenii
ENSDORG00000007331	Smg7	96	84.292	ENSOPRG00000013942	SMG7	96	84.018	Ochotona_princeps
ENSDORG00000007331	Smg7	100	95.909	ENSODEG00000010390	SMG7	100	95.909	Octodon_degus
ENSDORG00000007331	Smg7	99	60.902	ENSONIG00000000277	smg7	99	62.055	Oreochromis_niloticus
ENSDORG00000007331	Smg7	98	89.805	ENSOANG00000000994	SMG7	100	90.071	Ornithorhynchus_anatinus
ENSDORG00000007331	Smg7	100	89.034	ENSOCUG00000005887	SMG7	94	89.208	Oryctolagus_cuniculus
ENSDORG00000007331	Smg7	99	62.385	ENSORLG00000007314	smg7	70	92.763	Oryzias_latipes
ENSDORG00000007331	Smg7	99	62.719	ENSORLG00020015779	smg7	70	92.763	Oryzias_latipes_hni
ENSDORG00000007331	Smg7	99	64.169	ENSORLG00015012289	smg7	99	62.344	Oryzias_latipes_hsok
ENSDORG00000007331	Smg7	99	62.719	ENSOMEG00000002328	smg7	99	62.719	Oryzias_melastigma
ENSDORG00000007331	Smg7	97	95.648	ENSOGAG00000003107	SMG7	94	95.830	Otolemur_garnettii
ENSDORG00000007331	Smg7	100	95.039	ENSOARG00000001352	SMG7	98	95.039	Ovis_aries
ENSDORG00000007331	Smg7	100	88.880	ENSPPAG00000031619	SMG7	100	92.751	Pan_paniscus
ENSDORG00000007331	Smg7	100	96.432	ENSPPRG00000011222	SMG7	98	96.432	Panthera_pardus
ENSDORG00000007331	Smg7	96	96.263	ENSPTIG00000007242	SMG7	100	92.489	Panthera_tigris_altaica
ENSDORG00000007331	Smg7	97	96.649	ENSPTRG00000001764	SMG7	100	92.751	Pan_troglodytes
ENSDORG00000007331	Smg7	100	96.780	ENSPANG00000004520	SMG7	98	96.780	Papio_anubis
ENSDORG00000007331	Smg7	93	71.287	ENSPKIG00000007242	smg7	99	70.500	Paramormyrops_kingsleyae
ENSDORG00000007331	Smg7	99	90.821	ENSPSIG00000012201	SMG7	99	90.556	Pelodiscus_sinensis
ENSDORG00000007331	Smg7	55	56.500	ENSPMGG00000021833	smg7	88	57.000	Periophthalmus_magnuspinnatus
ENSDORG00000007331	Smg7	100	94.604	ENSPEMG00000011315	Smg7	100	94.604	Peromyscus_maniculatus_bairdii
ENSDORG00000007331	Smg7	100	89.226	ENSPCIG00000003786	SMG7	100	89.394	Phascolarctos_cinereus
ENSDORG00000007331	Smg7	99	63.006	ENSPFOG00000019219	smg7	99	63.101	Poecilia_formosa
ENSDORG00000007331	Smg7	99	61.379	ENSPLAG00000001446	smg7	99	60.963	Poecilia_latipinna
ENSDORG00000007331	Smg7	96	60.497	ENSPMEG00000005218	smg7	99	60.154	Poecilia_mexicana
ENSDORG00000007331	Smg7	87	59.867	ENSPREG00000019039	smg7	92	59.735	Poecilia_reticulata
ENSDORG00000007331	Smg7	100	88.964	ENSPPYG00000000427	SMG7	100	88.964	Pongo_abelii
ENSDORG00000007331	Smg7	95	84.410	ENSPCAG00000008360	SMG7	94	84.410	Procavia_capensis
ENSDORG00000007331	Smg7	100	96.693	ENSPCOG00000011996	SMG7	98	96.693	Propithecus_coquereli
ENSDORG00000007331	Smg7	92	90.249	ENSPVAG00000000851	SMG7	89	90.577	Pteropus_vampyrus
ENSDORG00000007331	Smg7	99	64.126	ENSPNYG00000007643	smg7	99	64.457	Pundamilia_nyererei
ENSDORG00000007331	Smg7	99	66.945	ENSPNAG00000011374	smg7	98	69.192	Pygocentrus_nattereri
ENSDORG00000007331	Smg7	100	95.304	ENSRNOG00000027962	Smg7	100	95.271	Rattus_norvegicus
ENSDORG00000007331	Smg7	100	96.606	ENSRBIG00000036316	SMG7	98	96.606	Rhinopithecus_bieti
ENSDORG00000007331	Smg7	100	96.606	ENSRROG00000035719	SMG7	100	96.582	Rhinopithecus_roxellana
ENSDORG00000007331	Smg7	100	96.231	ENSSBOG00000023454	SMG7	100	96.231	Saimiri_boliviensis_boliviensis
ENSDORG00000007331	Smg7	100	84.693	ENSSHAG00000013147	SMG7	100	84.441	Sarcophilus_harrisii
ENSDORG00000007331	Smg7	93	76.500	ENSSFOG00015017252	smg7	99	78.421	Scleropages_formosus
ENSDORG00000007331	Smg7	99	64.256	ENSSMAG00000006067	smg7	99	64.232	Scophthalmus_maximus
ENSDORG00000007331	Smg7	95	71.349	ENSSDUG00000017543	smg7	99	61.948	Seriola_dumerili
ENSDORG00000007331	Smg7	99	81.810	ENSSPUG00000002064	SMG7	99	81.641	Sphenodon_punctatus
ENSDORG00000007331	Smg7	100	61.328	ENSSPAG00000008733	smg7	100	61.328	Stegastes_partitus
ENSDORG00000007331	Smg7	100	96.407	ENSSSCG00000015558	SMG7	100	96.407	Sus_scrofa
ENSDORG00000007331	Smg7	99	81.435	ENSTGUG00000003928	SMG7	100	81.350	Taeniopygia_guttata
ENSDORG00000007331	Smg7	99	63.644	ENSTNIG00000002802	smg7	99	63.606	Tetraodon_nigroviridis
ENSDORG00000007331	Smg7	77	93.220	ENSTBEG00000003220	SMG7	75	93.220	Tupaia_belangeri
ENSDORG00000007331	Smg7	96	95.890	ENSTTRG00000014778	SMG7	94	95.890	Tursiops_truncatus
ENSDORG00000007331	Smg7	96	91.811	ENSUAMG00000017473	SMG7	100	91.811	Ursus_americanus
ENSDORG00000007331	Smg7	96	96.269	ENSUMAG00000016389	SMG7	100	96.269	Ursus_maritimus
ENSDORG00000007331	Smg7	100	96.319	ENSVVUG00000008976	SMG7	100	96.319	Vulpes_vulpes
ENSDORG00000007331	Smg7	100	65.835	ENSXETG00000012528	smg7	100	66.085	Xenopus_tropicalis
ENSDORG00000007331	Smg7	99	60.982	ENSXMAG00000007123	smg7	99	61.148	Xiphophorus_maculatus