EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000007739 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|E130112L17Rik|PFM2
Full Name: PR/SET domain 5
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 143869 bases
Position: chrKN672406.1:9976878-10120746
Accession: 105989880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000007253	zf-C2H2	PF00096.26	7.5e-49	1	9
ENSDORP00000007253	zf-C2H2	PF00096.26	7.5e-49	2	9
ENSDORP00000007253	zf-C2H2	PF00096.26	7.5e-49	3	9
ENSDORP00000007253	zf-C2H2	PF00096.26	7.5e-49	4	9
ENSDORP00000007253	zf-C2H2	PF00096.26	7.5e-49	5	9
ENSDORP00000007253	zf-C2H2	PF00096.26	7.5e-49	6	9
ENSDORP00000007253	zf-C2H2	PF00096.26	7.5e-49	7	9
ENSDORP00000007253	zf-C2H2	PF00096.26	7.5e-49	8	9
ENSDORP00000007253	zf-C2H2	PF00096.26	7.5e-49	9	9
ENSDORP00000007253	zf-met	PF12874.7	3.5e-15	1	2
ENSDORP00000007253	zf-met	PF12874.7	3.5e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000007739	-	1248	XM_013022136	ENSDORP00000007253	415 (aa)	XP_012877590	UPI000BAD0416

Gene Model

Click here to download ENSDORG00000007739's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000007739's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000007739	Prdm5	74	39.592	ENSDORG00000016625	Zfp661	85	37.868
ENSDORG00000007739	Prdm5	74	38.436	ENSDORG00000024150	-	57	38.436
ENSDORG00000007739	Prdm5	74	44.231	ENSDORG00000025372	Snai1	60	44.231
ENSDORG00000007739	Prdm5	67	40.146	ENSDORG00000029620	Snai2	54	40.146
ENSDORG00000007739	Prdm5	84	41.993	ENSDORG00000027564	Zfp26	78	41.993
ENSDORG00000007739	Prdm5	71	39.583	ENSDORG00000023772	Zfp423	92	40.000
ENSDORG00000007739	Prdm5	73	39.033	ENSDORG00000014484	Zfp334	68	39.033
ENSDORG00000007739	Prdm5	74	44.615	ENSDORG00000023443	-	100	44.615
ENSDORG00000007739	Prdm5	75	44.068	ENSDORG00000013725	Wt1	54	41.284
ENSDORG00000007739	Prdm5	78	32.174	ENSDORG00000009702	Zfp574	61	33.628
ENSDORG00000007739	Prdm5	81	44.565	ENSDORG00000023834	Patz1	52	35.465
ENSDORG00000007739	Prdm5	75	40.930	ENSDORG00000006054	Mynn	50	39.231
ENSDORG00000007739	Prdm5	77	40.541	ENSDORG00000023595	Zfp35	84	40.199
ENSDORG00000007739	Prdm5	76	37.984	ENSDORG00000009396	Zfp354a	79	37.795
ENSDORG00000007739	Prdm5	73	42.169	ENSDORG00000009870	Zfp768	54	44.094
ENSDORG00000007739	Prdm5	75	34.043	ENSDORG00000028510	Ovol1	59	34.043
ENSDORG00000007739	Prdm5	77	40.969	ENSDORG00000011934	Zfp1	61	40.969
ENSDORG00000007739	Prdm5	67	41.176	ENSDORG00000005538	Bcl6b	55	41.176
ENSDORG00000007739	Prdm5	75	37.349	ENSDORG00000023200	Zfp865	76	37.349
ENSDORG00000007739	Prdm5	79	40.532	ENSDORG00000026133	-	91	40.532
ENSDORG00000007739	Prdm5	73	44.231	ENSDORG00000012841	Sall4	50	44.231
ENSDORG00000007739	Prdm5	63	41.096	ENSDORG00000016697	Ovol2	56	41.096
ENSDORG00000007739	Prdm5	75	35.816	ENSDORG00000027637	Zfp319	86	35.640

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000007739	Prdm5	100	97.785	ENSG00000138738	PRDM5	100	97.785	Homo_sapiens
ENSDORG00000007739	Prdm5	100	87.342	ENSAPOG00000023220	prdm5	100	87.342	Acanthochromis_polyacanthus
ENSDORG00000007739	Prdm5	87	90.566	ENSAMEG00000003050	PRDM5	100	90.566	Ailuropoda_melanoleuca
ENSDORG00000007739	Prdm5	100	87.342	ENSACIG00000000406	prdm5	100	87.342	Amphilophus_citrinellus
ENSDORG00000007739	Prdm5	76	87.025	ENSAOCG00000014806	prdm5	100	87.025	Amphiprion_ocellaris
ENSDORG00000007739	Prdm5	76	70.030	ENSAPEG00000016846	prdm5	100	72.107	Amphiprion_percula
ENSDORG00000007739	Prdm5	100	87.342	ENSATEG00000013829	prdm5	100	87.342	Anabas_testudineus
ENSDORG00000007739	Prdm5	93	88.608	ENSAPLG00000013828	PRDM5	100	88.608	Anas_platyrhynchos
ENSDORG00000007739	Prdm5	100	89.241	ENSACAG00000012999	PRDM5	100	89.241	Anolis_carolinensis
ENSDORG00000007739	Prdm5	100	97.468	ENSANAG00000027411	PRDM5	100	97.468	Aotus_nancymaae
ENSDORG00000007739	Prdm5	100	87.342	ENSACLG00000017996	prdm5	100	87.342	Astatotilapia_calliptera
ENSDORG00000007739	Prdm5	80	88.103	ENSAMXG00000041864	prdm5	87	88.103	Astyanax_mexicanus
ENSDORG00000007739	Prdm5	100	97.152	ENSBTAG00000012111	PRDM5	100	97.152	Bos_taurus
ENSDORG00000007739	Prdm5	100	97.785	ENSCJAG00000003133	PRDM5	100	97.785	Callithrix_jacchus
ENSDORG00000007739	Prdm5	87	97.990	ENSCAFG00000004179	PRDM5	96	97.990	Canis_familiaris
ENSDORG00000007739	Prdm5	100	97.785	ENSCAFG00020017685	PRDM5	100	97.785	Canis_lupus_dingo
ENSDORG00000007739	Prdm5	100	96.835	ENSCHIG00000018772	PRDM5	100	96.835	Capra_hircus
ENSDORG00000007739	Prdm5	92	96.947	ENSTSYG00000009630	PRDM5	95	96.947	Carlito_syrichta
ENSDORG00000007739	Prdm5	80	97.333	ENSCAPG00000015217	PRDM5	100	97.333	Cavia_aperea
ENSDORG00000007739	Prdm5	93	97.917	ENSCPOG00000012883	PRDM5	100	97.917	Cavia_porcellus
ENSDORG00000007739	Prdm5	100	97.468	ENSCCAG00000023157	PRDM5	100	97.468	Cebus_capucinus
ENSDORG00000007739	Prdm5	100	97.785	ENSCATG00000042510	PRDM5	100	97.785	Cercocebus_atys
ENSDORG00000007739	Prdm5	93	97.656	ENSCLAG00000005392	PRDM5	100	97.656	Chinchilla_lanigera
ENSDORG00000007739	Prdm5	76	97.785	ENSCSAG00000003729	PRDM5	100	97.785	Chlorocebus_sabaeus
ENSDORG00000007739	Prdm5	99	86.364	ENSCHOG00000007801	PRDM5	89	86.364	Choloepus_hoffmanni
ENSDORG00000007739	Prdm5	100	88.924	ENSCPBG00000024735	PRDM5	100	88.924	Chrysemys_picta_bellii
ENSDORG00000007739	Prdm5	100	97.785	ENSCANG00000036807	PRDM5	100	97.785	Colobus_angolensis_palliatus
ENSDORG00000007739	Prdm5	100	95.904	ENSCGRG00001010581	Prdm5	100	95.904	Cricetulus_griseus_chok1gshd
ENSDORG00000007739	Prdm5	79	82.229	ENSCGRG00000010996	-	99	82.229	Cricetulus_griseus_crigri
ENSDORG00000007739	Prdm5	76	86.076	ENSCSEG00000019979	prdm5	100	86.076	Cynoglossus_semilaevis
ENSDORG00000007739	Prdm5	100	78.797	ENSCVAG00000013692	prdm5	100	78.797	Cyprinodon_variegatus
ENSDORG00000007739	Prdm5	99	87.179	ENSDARG00000006288	prdm5	99	87.179	Danio_rerio
ENSDORG00000007739	Prdm5	87	96.845	ENSDNOG00000002009	PRDM5	100	96.845	Dasypus_novemcinctus
ENSDORG00000007739	Prdm5	93	94.203	ENSETEG00000020268	PRDM5	80	94.203	Echinops_telfairi
ENSDORG00000007739	Prdm5	99	84.444	ENSEBUG00000004301	prdm5	100	84.444	Eptatretus_burgeri
ENSDORG00000007739	Prdm5	100	97.785	ENSEASG00005018365	PRDM5	100	97.785	Equus_asinus_asinus
ENSDORG00000007739	Prdm5	100	85.577	ENSECAG00000024747	-	100	85.577	Equus_caballus
ENSDORG00000007739	Prdm5	99	97.391	ENSECAG00000011516	PRDM5	90	97.391	Equus_caballus
ENSDORG00000007739	Prdm5	99	95.802	ENSEEUG00000010306	PRDM5	100	95.802	Erinaceus_europaeus
ENSDORG00000007739	Prdm5	99	88.546	ENSELUG00000005894	prdm5	93	88.546	Esox_lucius
ENSDORG00000007739	Prdm5	100	98.101	ENSFCAG00000025656	PRDM5	100	98.101	Felis_catus
ENSDORG00000007739	Prdm5	99	43.574	ENSFALG00000008381	PRDM5	98	42.353	Ficedula_albicollis
ENSDORG00000007739	Prdm5	100	97.349	ENSFDAG00000021361	PRDM5	100	97.785	Fukomys_damarensis
ENSDORG00000007739	Prdm5	75	88.141	ENSFHEG00000013040	prdm5	99	88.141	Fundulus_heteroclitus
ENSDORG00000007739	Prdm5	100	62.212	ENSGMOG00000012038	prdm5	100	67.763	Gadus_morhua
ENSDORG00000007739	Prdm5	100	88.291	ENSGALG00000011963	PRDM5	100	88.291	Gallus_gallus
ENSDORG00000007739	Prdm5	99	88.546	ENSGAFG00000019233	prdm5	95	88.546	Gambusia_affinis
ENSDORG00000007739	Prdm5	99	89.899	ENSGAGG00000020362	PRDM5	99	89.899	Gopherus_agassizii
ENSDORG00000007739	Prdm5	100	97.785	ENSGGOG00000013562	PRDM5	100	97.785	Gorilla_gorilla
ENSDORG00000007739	Prdm5	76	87.342	ENSHBUG00000023375	prdm5	100	87.342	Haplochromis_burtoni
ENSDORG00000007739	Prdm5	100	84.819	ENSHGLG00000003010	PRDM5	100	90.361	Heterocephalus_glaber_female
ENSDORG00000007739	Prdm5	100	97.468	ENSHGLG00100003696	PRDM5	100	97.468	Heterocephalus_glaber_male
ENSDORG00000007739	Prdm5	80	87.342	ENSHCOG00000012131	prdm5	99	87.619	Hippocampus_comes
ENSDORG00000007739	Prdm5	99	88.550	ENSIPUG00000001248	prdm5	100	87.025	Ictalurus_punctatus
ENSDORG00000007739	Prdm5	93	94.792	ENSSTOG00000004741	PRDM5	100	94.792	Ictidomys_tridecemlineatus
ENSDORG00000007739	Prdm5	93	96.615	ENSJJAG00000011464	Prdm5	100	96.667	Jaculus_jaculus
ENSDORG00000007739	Prdm5	76	87.025	ENSKMAG00000013663	prdm5	100	87.025	Kryptolebias_marmoratus
ENSDORG00000007739	Prdm5	100	87.025	ENSLBEG00000022736	prdm5	100	87.025	Labrus_bergylta
ENSDORG00000007739	Prdm5	87	89.241	ENSLACG00000009187	PRDM5	99	89.241	Latimeria_chalumnae
ENSDORG00000007739	Prdm5	100	86.392	ENSLOCG00000009778	prdm5	99	86.392	Lepisosteus_oculatus
ENSDORG00000007739	Prdm5	76	97.468	ENSLAFG00000006532	PRDM5	100	97.468	Loxodonta_africana
ENSDORG00000007739	Prdm5	100	97.785	ENSMFAG00000045845	PRDM5	100	97.785	Macaca_fascicularis
ENSDORG00000007739	Prdm5	100	97.785	ENSMMUG00000003249	PRDM5	100	97.785	Macaca_mulatta
ENSDORG00000007739	Prdm5	100	97.785	ENSMNEG00000019018	PRDM5	100	97.785	Macaca_nemestrina
ENSDORG00000007739	Prdm5	93	97.785	ENSMLEG00000023145	PRDM5	100	97.785	Mandrillus_leucophaeus
ENSDORG00000007739	Prdm5	100	87.342	ENSMAMG00000013419	prdm5	100	87.342	Mastacembelus_armatus
ENSDORG00000007739	Prdm5	76	87.342	ENSMZEG00005020645	prdm5	100	87.342	Maylandia_zebra
ENSDORG00000007739	Prdm5	93	88.291	ENSMGAG00000010710	PRDM5	100	88.291	Meleagris_gallopavo
ENSDORG00000007739	Prdm5	100	95.904	ENSMAUG00000006768	Prdm5	100	95.904	Mesocricetus_auratus
ENSDORG00000007739	Prdm5	100	97.468	ENSMICG00000001459	PRDM5	100	97.468	Microcebus_murinus
ENSDORG00000007739	Prdm5	99	97.500	ENSMOCG00000016267	Prdm5	100	96.203	Microtus_ochrogaster
ENSDORG00000007739	Prdm5	100	86.392	ENSMMOG00000006035	prdm5	100	86.392	Mola_mola
ENSDORG00000007739	Prdm5	100	82.319	ENSMODG00000018942	PRDM5	100	87.975	Monodelphis_domestica
ENSDORG00000007739	Prdm5	76	81.962	ENSMALG00000013934	prdm5	100	81.962	Monopterus_albus
ENSDORG00000007739	Prdm5	100	96.519	MGP_CAROLIEiJ_G0028463	Prdm5	100	96.519	Mus_caroli
ENSDORG00000007739	Prdm5	100	96.203	ENSMUSG00000029913	Prdm5	100	96.203	Mus_musculus
ENSDORG00000007739	Prdm5	99	97.500	MGP_PahariEiJ_G0022203	Prdm5	100	96.519	Mus_pahari
ENSDORG00000007739	Prdm5	100	96.203	MGP_SPRETEiJ_G0029467	Prdm5	100	96.203	Mus_spretus
ENSDORG00000007739	Prdm5	100	97.152	ENSMPUG00000017415	PRDM5	100	97.152	Mustela_putorius_furo
ENSDORG00000007739	Prdm5	87	89.375	ENSMLUG00000006097	PRDM5	100	89.375	Myotis_lucifugus
ENSDORG00000007739	Prdm5	100	96.145	ENSNGAG00000018317	Prdm5	100	96.145	Nannospalax_galili
ENSDORG00000007739	Prdm5	76	70.769	ENSNBRG00000004976	prdm5	100	79.874	Neolamprologus_brichardi
ENSDORG00000007739	Prdm5	100	97.785	ENSNLEG00000009107	PRDM5	100	97.785	Nomascus_leucogenys
ENSDORG00000007739	Prdm5	90	86.441	ENSMEUG00000006576	-	71	86.441	Notamacropus_eugenii
ENSDORG00000007739	Prdm5	83	100.000	ENSOPRG00000011066	-	60	100.000	Ochotona_princeps
ENSDORG00000007739	Prdm5	99	97.585	ENSODEG00000009133	PRDM5	100	97.585	Octodon_degus
ENSDORG00000007739	Prdm5	100	87.342	ENSONIG00000003111	prdm5	99	87.342	Oreochromis_niloticus
ENSDORG00000007739	Prdm5	75	84.444	ENSOANG00000006197	-	100	84.444	Ornithorhynchus_anatinus
ENSDORG00000007739	Prdm5	99	89.950	ENSOANG00000015109	PRDM5	97	89.950	Ornithorhynchus_anatinus
ENSDORG00000007739	Prdm5	90	83.861	ENSOCUG00000013454	PRDM5	100	86.392	Oryctolagus_cuniculus
ENSDORG00000007739	Prdm5	100	87.025	ENSORLG00000016247	prdm5	100	87.025	Oryzias_latipes
ENSDORG00000007739	Prdm5	76	87.025	ENSORLG00020018051	prdm5	100	87.025	Oryzias_latipes_hni
ENSDORG00000007739	Prdm5	100	87.025	ENSORLG00015013760	prdm5	100	87.025	Oryzias_latipes_hsok
ENSDORG00000007739	Prdm5	76	87.342	ENSOMEG00000005143	prdm5	100	87.342	Oryzias_melastigma
ENSDORG00000007739	Prdm5	76	83.544	ENSOGAG00000009996	PRDM5	85	87.025	Otolemur_garnettii
ENSDORG00000007739	Prdm5	92	96.617	ENSOARG00000015473	PRDM5	100	97.980	Ovis_aries
ENSDORG00000007739	Prdm5	93	97.785	ENSPPAG00000043045	PRDM5	100	98.092	Pan_paniscus
ENSDORG00000007739	Prdm5	100	98.101	ENSPPRG00000001020	PRDM5	100	98.101	Panthera_pardus
ENSDORG00000007739	Prdm5	93	98.101	ENSPTIG00000010807	PRDM5	95	98.101	Panthera_tigris_altaica
ENSDORG00000007739	Prdm5	100	97.785	ENSPTRG00000016403	PRDM5	100	97.785	Pan_troglodytes
ENSDORG00000007739	Prdm5	100	97.785	ENSPANG00000023612	PRDM5	100	97.785	Papio_anubis
ENSDORG00000007739	Prdm5	99	44.318	ENSPKIG00000015492	prdm5	99	43.164	Paramormyrops_kingsleyae
ENSDORG00000007739	Prdm5	100	88.924	ENSPSIG00000013505	PRDM5	100	88.924	Pelodiscus_sinensis
ENSDORG00000007739	Prdm5	76	81.962	ENSPMGG00000012622	prdm5	100	81.962	Periophthalmus_magnuspinnatus
ENSDORG00000007739	Prdm5	75	72.624	ENSPMAG00000005248	prdm5	100	76.806	Petromyzon_marinus
ENSDORG00000007739	Prdm5	98	42.368	ENSPFOG00000018630	prdm5	99	42.632	Poecilia_formosa
ENSDORG00000007739	Prdm5	100	87.342	ENSPLAG00000014148	prdm5	100	87.342	Poecilia_latipinna
ENSDORG00000007739	Prdm5	100	87.342	ENSPMEG00000018002	prdm5	100	87.342	Poecilia_mexicana
ENSDORG00000007739	Prdm5	100	87.342	ENSPREG00000018366	prdm5	100	87.342	Poecilia_reticulata
ENSDORG00000007739	Prdm5	100	97.785	ENSPPYG00000015031	PRDM5	100	97.785	Pongo_abelii
ENSDORG00000007739	Prdm5	93	88.608	ENSPCAG00000011671	PRDM5	100	88.608	Procavia_capensis
ENSDORG00000007739	Prdm5	100	97.778	ENSPCOG00000022828	PRDM5	100	97.778	Propithecus_coquereli
ENSDORG00000007739	Prdm5	93	93.987	ENSPVAG00000012309	PRDM5	100	93.987	Pteropus_vampyrus
ENSDORG00000007739	Prdm5	100	87.342	ENSPNYG00000012194	prdm5	100	87.342	Pundamilia_nyererei
ENSDORG00000007739	Prdm5	99	87.821	ENSPNAG00000026181	prdm5	99	87.821	Pygocentrus_nattereri
ENSDORG00000007739	Prdm5	89	83.013	ENSPNAG00000023191	-	99	83.280	Pygocentrus_nattereri
ENSDORG00000007739	Prdm5	99	91.519	ENSRNOG00000023679	Prdm5	99	91.519	Rattus_norvegicus
ENSDORG00000007739	Prdm5	100	97.785	ENSRBIG00000041307	PRDM5	100	97.785	Rhinopithecus_bieti
ENSDORG00000007739	Prdm5	93	62.179	ENSRROG00000035343	PRDM5	100	78.481	Rhinopithecus_roxellana
ENSDORG00000007739	Prdm5	100	97.468	ENSSBOG00000022100	PRDM5	100	97.468	Saimiri_boliviensis_boliviensis
ENSDORG00000007739	Prdm5	86	88.546	ENSSHAG00000003250	PRDM5	100	88.546	Sarcophilus_harrisii
ENSDORG00000007739	Prdm5	100	87.025	ENSSFOG00015020478	prdm5	100	87.025	Scleropages_formosus
ENSDORG00000007739	Prdm5	100	87.025	ENSSMAG00000018844	prdm5	100	87.025	Scophthalmus_maximus
ENSDORG00000007739	Prdm5	99	88.546	ENSSDUG00000020397	prdm5	100	87.342	Seriola_dumerili
ENSDORG00000007739	Prdm5	99	88.973	ENSSLDG00000013353	prdm5	100	87.342	Seriola_lalandi_dorsalis
ENSDORG00000007739	Prdm5	93	98.765	ENSSARG00000014129	-	61	98.765	Sorex_araneus
ENSDORG00000007739	Prdm5	100	88.434	ENSSPUG00000009941	PRDM5	100	88.434	Sphenodon_punctatus
ENSDORG00000007739	Prdm5	100	87.025	ENSSPAG00000013866	prdm5	100	87.025	Stegastes_partitus
ENSDORG00000007739	Prdm5	100	97.785	ENSSSCG00000009101	PRDM5	100	97.785	Sus_scrofa
ENSDORG00000007739	Prdm5	93	88.608	ENSTGUG00000001920	PRDM5	100	88.608	Taeniopygia_guttata
ENSDORG00000007739	Prdm5	76	86.392	ENSTRUG00000013850	prdm5	100	86.392	Takifugu_rubripes
ENSDORG00000007739	Prdm5	100	69.434	ENSTNIG00000005901	prdm5	100	69.434	Tetraodon_nigroviridis
ENSDORG00000007739	Prdm5	93	75.168	ENSTBEG00000015386	PRDM5	86	75.168	Tupaia_belangeri
ENSDORG00000007739	Prdm5	100	97.785	ENSTTRG00000010996	PRDM5	100	97.785	Tursiops_truncatus
ENSDORG00000007739	Prdm5	91	97.020	ENSUAMG00000009994	PRDM5	84	96.154	Ursus_americanus
ENSDORG00000007739	Prdm5	93	98.177	ENSUMAG00000003733	PRDM5	99	98.177	Ursus_maritimus
ENSDORG00000007739	Prdm5	96	80.063	ENSVPAG00000007435	PRDM5	100	80.063	Vicugna_pacos
ENSDORG00000007739	Prdm5	90	97.785	ENSVVUG00000013192	PRDM5	100	97.785	Vulpes_vulpes
ENSDORG00000007739	Prdm5	100	81.646	ENSXETG00000002101	prdm5	100	81.646	Xenopus_tropicalis
ENSDORG00000007739	Prdm5	100	87.342	ENSXCOG00000008567	prdm5	100	87.342	Xiphophorus_couchianus
ENSDORG00000007739	Prdm5	99	88.546	ENSXMAG00000013825	prdm5	100	87.342	Xiphophorus_maculatus