EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000009270 (Gene tree)
Gene ID: 105987021
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 83636 bases
Position: chrKN672384.1:6353839-6437474
Accession: 105987021
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000008716	ResIII	PF04851.15	3.7e-12	1	1
ENSDORP00000008716	DEAD	PF00270.29	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000009275	-	3246	XM_013018175	ENSDORP00000008716	1041 (aa)	XP_012873629	UPI000BAD2674

Gene Model

Click here to download ENSDORG00000009270's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000009270's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000009270	Smarca1	54	43.351	ENSDORG00000013555	Chd1l	62	43.351
ENSDORG00000009270	Smarca1	55	30.573	ENSDORG00000002492	Rad54b	70	31.002
ENSDORG00000009270	Smarca1	52	47.410	ENSDORG00000011812	Hells	68	47.410
ENSDORG00000009270	Smarca1	89	79.763	ENSDORG00000003466	Smarca5	97	79.036

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000009270	Smarca1	99	96.425	ENSG00000102038	SMARCA1	100	95.351	Homo_sapiens
ENSDORG00000009270	Smarca1	90	84.845	ENSAPOG00000016035	smarca5	96	85.073	Acanthochromis_polyacanthus
ENSDORG00000009270	Smarca1	99	93.887	ENSAMEG00000015218	SMARCA1	98	94.078	Ailuropoda_melanoleuca
ENSDORG00000009270	Smarca1	83	85.069	ENSACIG00000016982	smarca5	97	84.977	Amphilophus_citrinellus
ENSDORG00000009270	Smarca1	90	84.845	ENSAOCG00000015578	smarca5	96	81.910	Amphiprion_ocellaris
ENSDORG00000009270	Smarca1	90	84.845	ENSAPEG00000011117	smarca5	97	85.194	Amphiprion_percula
ENSDORG00000009270	Smarca1	95	81.818	ENSATEG00000012894	smarca5	96	81.690	Anabas_testudineus
ENSDORG00000009270	Smarca1	90	92.251	ENSAPLG00000013149	SMARCA1	97	91.954	Anas_platyrhynchos
ENSDORG00000009270	Smarca1	97	89.165	ENSACAG00000011376	SMARCA1	96	89.165	Anolis_carolinensis
ENSDORG00000009270	Smarca1	97	91.232	ENSANAG00000023098	SMARCA1	98	91.304	Aotus_nancymaae
ENSDORG00000009270	Smarca1	90	84.624	ENSACLG00000025356	smarca5	96	82.010	Astatotilapia_calliptera
ENSDORG00000009270	Smarca1	88	88.017	ENSAMXG00000011227	smarca1	99	88.462	Astyanax_mexicanus
ENSDORG00000009270	Smarca1	95	81.791	ENSAMXG00000005709	smarca5	97	81.665	Astyanax_mexicanus
ENSDORG00000009270	Smarca1	99	94.990	ENSBTAG00000002292	SMARCA1	100	94.386	Bos_taurus
ENSDORG00000009270	Smarca1	92	63.505	WBGene00002169	isw-1	95	63.505	Caenorhabditis_elegans
ENSDORG00000009270	Smarca1	97	96.158	ENSCJAG00000002868	SMARCA1	98	96.135	Callithrix_jacchus
ENSDORG00000009270	Smarca1	99	85.551	ENSCAFG00000018673	SMARCA1	97	86.941	Canis_familiaris
ENSDORG00000009270	Smarca1	99	95.556	ENSCAFG00020001751	SMARCA1	98	95.749	Canis_lupus_dingo
ENSDORG00000009270	Smarca1	99	94.894	ENSCHIG00000009837	SMARCA1	100	94.324	Capra_hircus
ENSDORG00000009270	Smarca1	95	96.259	ENSTSYG00000004240	SMARCA1	99	96.259	Carlito_syrichta
ENSDORG00000009270	Smarca1	97	94.706	ENSCPOG00000013601	SMARCA1	100	93.833	Cavia_porcellus
ENSDORG00000009270	Smarca1	97	93.103	ENSCCAG00000030817	SMARCA1	98	93.140	Cebus_capucinus
ENSDORG00000009270	Smarca1	100	96.449	ENSCATG00000015921	SMARCA1	100	96.449	Cercocebus_atys
ENSDORG00000009270	Smarca1	99	96.039	ENSCLAG00000002171	SMARCA1	100	94.972	Chinchilla_lanigera
ENSDORG00000009270	Smarca1	99	96.522	ENSCSAG00000008460	SMARCA1	98	96.522	Chlorocebus_sabaeus
ENSDORG00000009270	Smarca1	94	91.812	ENSCPBG00000001146	SMARCA1	92	91.812	Chrysemys_picta_bellii
ENSDORG00000009270	Smarca1	91	73.701	ENSCING00000004110	swi/snf	95	73.701	Ciona_intestinalis
ENSDORG00000009270	Smarca1	92	73.216	ENSCSAVG00000004620	-	100	73.831	Ciona_savignyi
ENSDORG00000009270	Smarca1	99	96.329	ENSCANG00000007183	SMARCA1	98	96.329	Colobus_angolensis_palliatus
ENSDORG00000009270	Smarca1	99	94.691	ENSCGRG00001010776	Smarca1	100	94.408	Cricetulus_griseus_chok1gshd
ENSDORG00000009270	Smarca1	95	95.657	ENSCGRG00000015301	Smarca1	99	95.753	Cricetulus_griseus_crigri
ENSDORG00000009270	Smarca1	92	84.293	ENSCSEG00000000328	smarca5	96	82.038	Cynoglossus_semilaevis
ENSDORG00000009270	Smarca1	90	84.517	ENSCVAG00000008668	smarca5	97	84.727	Cyprinodon_variegatus
ENSDORG00000009270	Smarca1	93	85.714	ENSDARG00000012776	smarca1	97	84.653	Danio_rerio
ENSDORG00000009270	Smarca1	91	83.895	ENSDARG00000052348	smarca5	93	83.731	Danio_rerio
ENSDORG00000009270	Smarca1	98	94.390	ENSDNOG00000004315	SMARCA1	100	94.208	Dasypus_novemcinctus
ENSDORG00000009270	Smarca1	91	73.634	FBgn0011604	Iswi	94	73.760	Drosophila_melanogaster
ENSDORG00000009270	Smarca1	79	92.727	ENSETEG00000017426	SMARCA1	86	92.727	Echinops_telfairi
ENSDORG00000009270	Smarca1	90	82.189	ENSEBUG00000001239	smarca5	95	81.478	Eptatretus_burgeri
ENSDORG00000009270	Smarca1	93	92.754	ENSEASG00005008218	SMARCA1	99	91.767	Equus_asinus_asinus
ENSDORG00000009270	Smarca1	99	95.087	ENSECAG00000012106	SMARCA1	98	95.568	Equus_caballus
ENSDORG00000009270	Smarca1	77	95.695	ENSEEUG00000014927	SMARCA1	83	95.695	Erinaceus_europaeus
ENSDORG00000009270	Smarca1	94	85.396	ENSELUG00000010515	smarca1	98	85.060	Esox_lucius
ENSDORG00000009270	Smarca1	97	96.351	ENSFCAG00000018496	SMARCA1	98	96.132	Felis_catus
ENSDORG00000009270	Smarca1	88	91.676	ENSFALG00000000209	SMARCA1	98	91.676	Ficedula_albicollis
ENSDORG00000009270	Smarca1	95	95.992	ENSFDAG00000009818	SMARCA1	98	95.992	Fukomys_damarensis
ENSDORG00000009270	Smarca1	90	84.836	ENSFHEG00000007687	smarca5	91	85.514	Fundulus_heteroclitus
ENSDORG00000009270	Smarca1	95	89.067	ENSGALG00000008431	SMARCA1	98	90.161	Gallus_gallus
ENSDORG00000009270	Smarca1	90	84.411	ENSGAFG00000017731	smarca5	97	81.070	Gambusia_affinis
ENSDORG00000009270	Smarca1	91	92.511	ENSGAGG00000023575	SMARCA1	98	92.511	Gopherus_agassizii
ENSDORG00000009270	Smarca1	70	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSDORG00000009270	Smarca1	97	95.665	ENSHGLG00000003080	SMARCA1	100	94.592	Heterocephalus_glaber_female
ENSDORG00000009270	Smarca1	94	94.929	ENSHGLG00100001102	SMARCA1	98	95.706	Heterocephalus_glaber_male
ENSDORG00000009270	Smarca1	90	84.984	ENSHCOG00000005458	smarca5	97	81.145	Hippocampus_comes
ENSDORG00000009270	Smarca1	95	80.962	ENSIPUG00000005229	SMARCA5	95	83.992	Ictalurus_punctatus
ENSDORG00000009270	Smarca1	95	85.238	ENSIPUG00000016905	Smarca1	98	86.875	Ictalurus_punctatus
ENSDORG00000009270	Smarca1	99	96.329	ENSSTOG00000014524	SMARCA1	100	95.524	Ictidomys_tridecemlineatus
ENSDORG00000009270	Smarca1	98	95.788	ENSJJAG00000002593	Smarca1	100	95.677	Jaculus_jaculus
ENSDORG00000009270	Smarca1	90	84.878	ENSKMAG00000003777	smarca5	97	81.555	Kryptolebias_marmoratus
ENSDORG00000009270	Smarca1	91	84.017	ENSLBEG00000018112	smarca5	97	81.529	Labrus_bergylta
ENSDORG00000009270	Smarca1	89	84.103	ENSLBEG00000013295	SMARCA1	100	84.956	Labrus_bergylta
ENSDORG00000009270	Smarca1	95	88.574	ENSLACG00000016697	SMARCA1	97	88.574	Latimeria_chalumnae
ENSDORG00000009270	Smarca1	92	89.655	ENSLOCG00000014591	smarca1	95	89.506	Lepisosteus_oculatus
ENSDORG00000009270	Smarca1	95	94.955	ENSLAFG00000000896	SMARCA1	100	94.955	Loxodonta_africana
ENSDORG00000009270	Smarca1	100	96.449	ENSMFAG00000002117	SMARCA1	100	96.449	Macaca_fascicularis
ENSDORG00000009270	Smarca1	100	96.449	ENSMMUG00000008818	SMARCA1	100	96.449	Macaca_mulatta
ENSDORG00000009270	Smarca1	100	96.449	ENSMNEG00000041768	SMARCA1	100	96.449	Macaca_nemestrina
ENSDORG00000009270	Smarca1	99	96.329	ENSMLEG00000043198	SMARCA1	98	96.329	Mandrillus_leucophaeus
ENSDORG00000009270	Smarca1	90	84.624	ENSMAMG00000014294	smarca5	96	81.864	Mastacembelus_armatus
ENSDORG00000009270	Smarca1	90	84.624	ENSMZEG00005009369	smarca5	96	82.010	Maylandia_zebra
ENSDORG00000009270	Smarca1	93	90.256	ENSMGAG00000007042	SMARCA1	98	90.000	Meleagris_gallopavo
ENSDORG00000009270	Smarca1	100	94.651	ENSMAUG00000008133	Smarca1	100	94.842	Mesocricetus_auratus
ENSDORG00000009270	Smarca1	97	96.252	ENSMICG00000015768	SMARCA1	98	96.035	Microcebus_murinus
ENSDORG00000009270	Smarca1	100	93.833	ENSMOCG00000009464	Smarca1	100	94.023	Microtus_ochrogaster
ENSDORG00000009270	Smarca1	91	81.914	ENSMMOG00000005547	smarca5	97	81.884	Mola_mola
ENSDORG00000009270	Smarca1	97	89.021	ENSMODG00000013187	-	97	89.021	Monodelphis_domestica
ENSDORG00000009270	Smarca1	92	83.316	ENSMALG00000002081	smarca5	97	82.497	Monopterus_albus
ENSDORG00000009270	Smarca1	100	95.029	MGP_CAROLIEiJ_G0033034	Smarca1	100	95.029	Mus_caroli
ENSDORG00000009270	Smarca1	100	95.029	ENSMUSG00000031099	Smarca1	100	95.029	Mus_musculus
ENSDORG00000009270	Smarca1	100	94.837	MGP_PahariEiJ_G0031579	Smarca1	100	94.837	Mus_pahari
ENSDORG00000009270	Smarca1	100	95.124	MGP_SPRETEiJ_G0034192	Smarca1	100	95.124	Mus_spretus
ENSDORG00000009270	Smarca1	99	94.556	ENSMPUG00000017423	SMARCA1	92	94.747	Mustela_putorius_furo
ENSDORG00000009270	Smarca1	98	92.614	ENSMLUG00000029614	SMARCA1	98	91.985	Myotis_lucifugus
ENSDORG00000009270	Smarca1	98	95.146	ENSNGAG00000006492	Smarca1	100	95.224	Nannospalax_galili
ENSDORG00000009270	Smarca1	90	84.730	ENSNBRG00000004463	smarca5	97	84.194	Neolamprologus_brichardi
ENSDORG00000009270	Smarca1	97	94.547	ENSNLEG00000015179	SMARCA1	99	96.353	Nomascus_leucogenys
ENSDORG00000009270	Smarca1	90	80.987	ENSMEUG00000008819	SMARCA1	100	80.987	Notamacropus_eugenii
ENSDORG00000009270	Smarca1	98	94.773	ENSODEG00000012163	SMARCA1	100	94.682	Octodon_degus
ENSDORG00000009270	Smarca1	90	84.730	ENSONIG00000009993	smarca5	96	82.111	Oreochromis_niloticus
ENSDORG00000009270	Smarca1	91	92.835	ENSOANG00000002862	SMARCA1	98	92.835	Ornithorhynchus_anatinus
ENSDORG00000009270	Smarca1	98	94.690	ENSOCUG00000001047	SMARCA1	98	95.362	Oryctolagus_cuniculus
ENSDORG00000009270	Smarca1	90	84.665	ENSORLG00000021998	smarca5	96	81.782	Oryzias_latipes
ENSDORG00000009270	Smarca1	93	82.577	ENSORLG00020017679	smarca5	96	81.882	Oryzias_latipes_hni
ENSDORG00000009270	Smarca1	90	84.665	ENSORLG00015017210	smarca5	98	80.413	Oryzias_latipes_hsok
ENSDORG00000009270	Smarca1	90	84.558	ENSOMEG00000000086	smarca5	96	81.663	Oryzias_melastigma
ENSDORG00000009270	Smarca1	98	94.778	ENSOGAG00000004399	SMARCA1	100	94.687	Otolemur_garnettii
ENSDORG00000009270	Smarca1	94	95.657	ENSOARG00000014638	SMARCA1	98	97.179	Ovis_aries
ENSDORG00000009270	Smarca1	99	96.425	ENSPPAG00000034647	SMARCA1	98	96.425	Pan_paniscus
ENSDORG00000009270	Smarca1	97	96.351	ENSPPRG00000008929	SMARCA1	98	96.132	Panthera_pardus
ENSDORG00000009270	Smarca1	94	94.769	ENSPTIG00000000915	SMARCA1	96	94.769	Panthera_tigris_altaica
ENSDORG00000009270	Smarca1	100	96.449	ENSPTRG00000049876	SMARCA1	100	96.449	Pan_troglodytes
ENSDORG00000009270	Smarca1	99	96.425	ENSPANG00000003871	SMARCA1	98	96.425	Papio_anubis
ENSDORG00000009270	Smarca1	93	85.965	ENSPKIG00000013411	smarca1	98	85.965	Paramormyrops_kingsleyae
ENSDORG00000009270	Smarca1	94	90.495	ENSPSIG00000010101	SMARCA1	98	92.194	Pelodiscus_sinensis
ENSDORG00000009270	Smarca1	100	95.320	ENSPEMG00000017503	Smarca1	100	95.415	Peromyscus_maniculatus_bairdii
ENSDORG00000009270	Smarca1	97	89.360	ENSPCIG00000015460	SMARCA1	97	91.131	Phascolarctos_cinereus
ENSDORG00000009270	Smarca1	90	84.665	ENSPFOG00000007649	smarca5	97	81.157	Poecilia_formosa
ENSDORG00000009270	Smarca1	90	84.665	ENSPLAG00000003363	smarca5	97	81.157	Poecilia_latipinna
ENSDORG00000009270	Smarca1	90	84.558	ENSPMEG00000019849	smarca5	97	81.057	Poecilia_mexicana
ENSDORG00000009270	Smarca1	90	84.558	ENSPREG00000023250	smarca5	97	81.057	Poecilia_reticulata
ENSDORG00000009270	Smarca1	97	93.596	ENSPPYG00000020703	SMARCA1	98	93.623	Pongo_abelii
ENSDORG00000009270	Smarca1	78	90.909	ENSPCOG00000020722	SMARCA1	94	91.189	Propithecus_coquereli
ENSDORG00000009270	Smarca1	92	94.643	ENSPVAG00000003805	SMARCA1	94	94.643	Pteropus_vampyrus
ENSDORG00000009270	Smarca1	56	84.110	ENSPNYG00000012299	smarca5	92	82.933	Pundamilia_nyererei
ENSDORG00000009270	Smarca1	99	95.261	ENSRNOG00000003762	Smarca1	98	95.261	Rattus_norvegicus
ENSDORG00000009270	Smarca1	99	96.329	ENSRROG00000034167	SMARCA1	98	96.329	Rhinopithecus_roxellana
ENSDORG00000009270	Smarca1	92	97.597	ENSSBOG00000020641	SMARCA1	98	97.597	Saimiri_boliviensis_boliviensis
ENSDORG00000009270	Smarca1	91	85.924	ENSSHAG00000013518	SMARCA1	97	85.924	Sarcophilus_harrisii
ENSDORG00000009270	Smarca1	94	82.125	ENSSFOG00015016794	smarca5	98	84.583	Scleropages_formosus
ENSDORG00000009270	Smarca1	93	86.667	ENSSFOG00015009043	smarca1	97	86.405	Scleropages_formosus
ENSDORG00000009270	Smarca1	91	83.966	ENSSMAG00000004801	smarca5	97	81.033	Scophthalmus_maximus
ENSDORG00000009270	Smarca1	90	84.305	ENSSDUG00000020690	smarca5	96	82.093	Seriola_dumerili
ENSDORG00000009270	Smarca1	90	84.305	ENSSLDG00000025190	smarca5	96	82.093	Seriola_lalandi_dorsalis
ENSDORG00000009270	Smarca1	87	87.681	ENSSARG00000000842	SMARCA1	92	87.681	Sorex_araneus
ENSDORG00000009270	Smarca1	95	90.660	ENSSPUG00000000590	SMARCA1	97	89.264	Sphenodon_punctatus
ENSDORG00000009270	Smarca1	90	84.517	ENSSPAG00000002894	smarca5	94	85.073	Stegastes_partitus
ENSDORG00000009270	Smarca1	98	95.093	ENSSSCG00000012649	SMARCA1	100	95.476	Sus_scrofa
ENSDORG00000009270	Smarca1	90	91.932	ENSTGUG00000003899	-	97	91.641	Taeniopygia_guttata
ENSDORG00000009270	Smarca1	90	84.517	ENSTRUG00000014094	smarca5	96	81.891	Takifugu_rubripes
ENSDORG00000009270	Smarca1	90	83.671	ENSTNIG00000017717	smarca5	92	82.712	Tetraodon_nigroviridis
ENSDORG00000009270	Smarca1	95	89.157	ENSTBEG00000014973	SMARCA1	100	89.157	Tupaia_belangeri
ENSDORG00000009270	Smarca1	94	92.727	ENSTTRG00000006168	SMARCA1	100	92.727	Tursiops_truncatus
ENSDORG00000009270	Smarca1	99	95.169	ENSUAMG00000020201	SMARCA1	98	95.362	Ursus_americanus
ENSDORG00000009270	Smarca1	97	89.391	ENSUMAG00000004073	SMARCA1	97	96.837	Ursus_maritimus
ENSDORG00000009270	Smarca1	74	98.089	ENSVPAG00000010492	-	80	98.089	Vicugna_pacos
ENSDORG00000009270	Smarca1	94	96.725	ENSVVUG00000008878	SMARCA1	100	96.973	Vulpes_vulpes
ENSDORG00000009270	Smarca1	92	89.562	ENSXETG00000001526	smarca1	98	89.403	Xenopus_tropicalis
ENSDORG00000009270	Smarca1	90	84.305	ENSXCOG00000011170	smarca5	96	83.540	Xiphophorus_couchianus
ENSDORG00000009270	Smarca1	90	84.305	ENSXMAG00000009678	smarca5	98	84.205	Xiphophorus_maculatus