EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000009984 (Gene tree)
Gene ID: 105994690
Gene Symbol: Upf1
Alias: B430202H16Rik|PNORF-1|Rent1
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 11154 bases
Position: chrKN672454.1:1533585-1544738
Accession: 105994690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000009389	UPF1_Zn_bind	PF09416.10	5.4e-75	1	1
ENSDORP00000027782	UPF1_Zn_bind	PF09416.10	5.4e-75	1	1
ENSDORP00000009389	ResIII	PF04851.15	2.1e-05	1	1
ENSDORP00000027782	ResIII	PF04851.15	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000030811	-	3321	XM_013028318	ENSDORP00000027782	1106 (aa)	XP_012883772	UPI000BAD1253
ENSDORT00000009988	-	3297	-	ENSDORP00000009389	1098 (aa)	-	UPI000BAD296C

Gene Model

Click here to download ENSDORG00000009984's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000009984's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000009984	Upf1	96	95.884	ENSG00000005007	UPF1	95	95.884	Homo_sapiens
ENSDORG00000009984	Upf1	95	89.972	ENSAPOG00000023773	upf1	95	90.161	Acanthochromis_polyacanthus
ENSDORG00000009984	Upf1	95	91.358	ENSAPOG00000010916	-	95	91.453	Acanthochromis_polyacanthus
ENSDORG00000009984	Upf1	95	96.768	ENSAMEG00000011474	UPF1	95	95.345	Ailuropoda_melanoleuca
ENSDORG00000009984	Upf1	95	89.603	ENSACIG00000019949	upf1	95	90.161	Amphilophus_citrinellus
ENSDORG00000009984	Upf1	94	91.321	ENSACIG00000010985	-	100	91.418	Amphilophus_citrinellus
ENSDORG00000009984	Upf1	95	89.449	ENSAOCG00000018519	upf1	95	90.075	Amphiprion_ocellaris
ENSDORG00000009984	Upf1	95	91.358	ENSAOCG00000006352	-	100	88.921	Amphiprion_ocellaris
ENSDORG00000009984	Upf1	95	91.358	ENSAPEG00000006292	-	100	88.921	Amphiprion_percula
ENSDORG00000009984	Upf1	95	89.449	ENSAPEG00000016344	upf1	95	90.075	Amphiprion_percula
ENSDORG00000009984	Upf1	95	88.598	ENSATEG00000017867	upf1	95	89.439	Anabas_testudineus
ENSDORG00000009984	Upf1	95	91.358	ENSATEG00000016606	-	95	91.453	Anabas_testudineus
ENSDORG00000009984	Upf1	95	95.152	ENSAPLG00000009175	UPF1	99	95.152	Anas_platyrhynchos
ENSDORG00000009984	Upf1	97	94.299	ENSANAG00000024107	UPF1	95	95.442	Aotus_nancymaae
ENSDORG00000009984	Upf1	95	89.414	ENSACLG00000007181	upf1	95	89.972	Astatotilapia_calliptera
ENSDORG00000009984	Upf1	95	91.263	ENSACLG00000022630	-	95	91.263	Astatotilapia_calliptera
ENSDORG00000009984	Upf1	95	91.651	ENSAMXG00000042187	upf1	95	92.220	Astyanax_mexicanus
ENSDORG00000009984	Upf1	95	96.768	ENSBTAG00000020922	UPF1	96	95.088	Bos_taurus
ENSDORG00000009984	Upf1	79	55.086	WBGene00004880	smg-2	80	55.086	Caenorhabditis_elegans
ENSDORG00000009984	Upf1	96	95.884	ENSCJAG00000019627	UPF1	95	95.884	Callithrix_jacchus
ENSDORG00000009984	Upf1	96	95.705	ENSCAFG00000014578	UPF1	95	95.705	Canis_familiaris
ENSDORG00000009984	Upf1	95	95.722	ENSCAFG00020012347	UPF1	95	94.678	Canis_lupus_dingo
ENSDORG00000009984	Upf1	96	94.991	ENSCHIG00000011018	UPF1	96	94.991	Capra_hircus
ENSDORG00000009984	Upf1	97	95.181	ENSTSYG00000008877	UPF1	99	95.880	Carlito_syrichta
ENSDORG00000009984	Upf1	95	95.726	ENSCAPG00000005758	UPF1	95	95.726	Cavia_aperea
ENSDORG00000009984	Upf1	96	94.643	ENSCPOG00000025463	UPF1	96	94.643	Cavia_porcellus
ENSDORG00000009984	Upf1	96	95.884	ENSCCAG00000032175	UPF1	95	95.884	Cebus_capucinus
ENSDORG00000009984	Upf1	95	96.759	ENSCATG00000040306	UPF1	98	96.759	Cercocebus_atys
ENSDORG00000009984	Upf1	97	95.353	ENSCLAG00000004037	UPF1	100	96.771	Chinchilla_lanigera
ENSDORG00000009984	Upf1	95	95.731	ENSCSAG00000005276	UPF1	95	94.855	Chlorocebus_sabaeus
ENSDORG00000009984	Upf1	95	94.408	ENSCPBG00000012513	UPF1	96	93.049	Chrysemys_picta_bellii
ENSDORG00000009984	Upf1	70	82.497	ENSCING00000021399	-	95	80.025	Ciona_intestinalis
ENSDORG00000009984	Upf1	95	72.023	ENSCSAVG00000006533	-	94	72.023	Ciona_savignyi
ENSDORG00000009984	Upf1	95	96.774	ENSCANG00000029819	UPF1	98	96.774	Colobus_angolensis_palliatus
ENSDORG00000009984	Upf1	97	93.733	ENSCGRG00001021067	Upf1	96	94.249	Cricetulus_griseus_chok1gshd
ENSDORG00000009984	Upf1	96	95.970	ENSCGRG00000013480	Upf1	99	95.970	Cricetulus_griseus_crigri
ENSDORG00000009984	Upf1	95	91.445	ENSCSEG00000016159	-	95	91.445	Cynoglossus_semilaevis
ENSDORG00000009984	Upf1	95	84.857	ENSCSEG00000017239	upf1	94	85.048	Cynoglossus_semilaevis
ENSDORG00000009984	Upf1	95	91.073	ENSCVAG00000010561	upf1	95	91.073	Cyprinodon_variegatus
ENSDORG00000009984	Upf1	95	91.461	ENSDARG00000016302	upf1	95	92.030	Danio_rerio
ENSDORG00000009984	Upf1	77	74.794	FBgn0030354	Upf1	71	74.794	Drosophila_melanogaster
ENSDORG00000009984	Upf1	52	86.926	ENSEBUG00000010069	upf1	94	85.370	Eptatretus_burgeri
ENSDORG00000009984	Upf1	95	95.627	ENSEASG00005006549	UPF1	96	93.883	Equus_asinus_asinus
ENSDORG00000009984	Upf1	95	95.627	ENSECAG00000010639	UPF1	96	93.883	Equus_caballus
ENSDORG00000009984	Upf1	95	89.906	ENSELUG00000012916	-	95	90.481	Esox_lucius
ENSDORG00000009984	Upf1	95	89.046	ENSELUG00000020917	upf1	95	89.330	Esox_lucius
ENSDORG00000009984	Upf1	95	96.673	ENSFCAG00000009757	UPF1	95	95.612	Felis_catus
ENSDORG00000009984	Upf1	95	94.245	ENSFALG00000009312	UPF1	96	94.245	Ficedula_albicollis
ENSDORG00000009984	Upf1	98	95.366	ENSFDAG00000014816	UPF1	100	96.866	Fukomys_damarensis
ENSDORG00000009984	Upf1	87	92.494	ENSFHEG00000016276	-	96	92.494	Fundulus_heteroclitus
ENSDORG00000009984	Upf1	95	87.206	ENSFHEG00000006428	upf1	94	87.206	Fundulus_heteroclitus
ENSDORG00000009984	Upf1	95	90.788	ENSGMOG00000007541	upf1	95	91.738	Gadus_morhua
ENSDORG00000009984	Upf1	95	94.867	ENSGALG00000003220	UPF1	95	93.315	Gallus_gallus
ENSDORG00000009984	Upf1	61	94.895	ENSGAFG00000015443	-	81	94.895	Gambusia_affinis
ENSDORG00000009984	Upf1	95	90.494	ENSGAFG00000004831	upf1	95	90.970	Gambusia_affinis
ENSDORG00000009984	Upf1	95	94.772	ENSGAGG00000022217	UPF1	96	93.488	Gopherus_agassizii
ENSDORG00000009984	Upf1	96	95.648	ENSGGOG00000002608	UPF1	99	95.648	Gorilla_gorilla
ENSDORG00000009984	Upf1	82	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSDORG00000009984	Upf1	82	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSDORG00000009984	Upf1	96	95.514	ENSHGLG00000010900	UPF1	95	95.514	Heterocephalus_glaber_female
ENSDORG00000009984	Upf1	96	94.366	ENSHGLG00100005904	UPF1	97	94.366	Heterocephalus_glaber_male
ENSDORG00000009984	Upf1	95	90.209	ENSHCOG00000008918	upf1	100	90.335	Hippocampus_comes
ENSDORG00000009984	Upf1	95	92.125	ENSIPUG00000005108	UPF1	95	92.600	Ictalurus_punctatus
ENSDORG00000009984	Upf1	96	95.884	ENSSTOG00000009196	UPF1	95	95.884	Ictidomys_tridecemlineatus
ENSDORG00000009984	Upf1	96	95.603	ENSJJAG00000023151	Upf1	96	95.167	Jaculus_jaculus
ENSDORG00000009984	Upf1	95	91.453	ENSKMAG00000004962	upf1	95	91.453	Kryptolebias_marmoratus
ENSDORG00000009984	Upf1	95	88.109	ENSLBEG00000014862	upf1	95	89.326	Labrus_bergylta
ENSDORG00000009984	Upf1	95	91.168	ENSLBEG00000027848	-	95	91.263	Labrus_bergylta
ENSDORG00000009984	Upf1	63	92.837	ENSLACG00000008482	UPF1	100	92.837	Latimeria_chalumnae
ENSDORG00000009984	Upf1	95	93.637	ENSLOCG00000002072	upf1	95	93.732	Lepisosteus_oculatus
ENSDORG00000009984	Upf1	97	94.172	ENSLAFG00000014963	UPF1	96	94.172	Loxodonta_africana
ENSDORG00000009984	Upf1	96	95.884	ENSMFAG00000037748	UPF1	95	95.884	Macaca_fascicularis
ENSDORG00000009984	Upf1	96	95.884	ENSMMUG00000023286	UPF1	95	95.884	Macaca_mulatta
ENSDORG00000009984	Upf1	96	95.884	ENSMNEG00000000046	UPF1	95	95.884	Macaca_nemestrina
ENSDORG00000009984	Upf1	95	96.771	ENSMLEG00000028404	UPF1	100	96.771	Mandrillus_leucophaeus
ENSDORG00000009984	Upf1	95	90.598	ENSMAMG00000006231	-	95	91.168	Mastacembelus_armatus
ENSDORG00000009984	Upf1	95	88.505	ENSMAMG00000006229	upf1	95	89.533	Mastacembelus_armatus
ENSDORG00000009984	Upf1	95	88.422	ENSMZEG00005003489	upf1	95	89.671	Maylandia_zebra
ENSDORG00000009984	Upf1	95	91.263	ENSMZEG00005016386	-	95	91.263	Maylandia_zebra
ENSDORG00000009984	Upf1	95	94.682	ENSMGAG00000004745	UPF1	100	94.682	Meleagris_gallopavo
ENSDORG00000009984	Upf1	98	94.139	ENSMAUG00000011398	Upf1	95	96.771	Mesocricetus_auratus
ENSDORG00000009984	Upf1	96	95.962	ENSMICG00000001659	UPF1	95	95.962	Microcebus_murinus
ENSDORG00000009984	Upf1	96	95.794	ENSMOCG00000005699	Upf1	95	95.794	Microtus_ochrogaster
ENSDORG00000009984	Upf1	95	89.609	ENSMMOG00000007881	upf1	94	90.095	Mola_mola
ENSDORG00000009984	Upf1	95	89.120	ENSMMOG00000007537	-	99	89.215	Mola_mola
ENSDORG00000009984	Upf1	96	95.047	ENSMODG00000003689	UPF1	98	92.732	Monodelphis_domestica
ENSDORG00000009984	Upf1	95	89.449	ENSMALG00000000144	upf1	95	89.734	Monopterus_albus
ENSDORG00000009984	Upf1	95	89.972	ENSMALG00000018100	-	95	90.066	Monopterus_albus
ENSDORG00000009984	Upf1	96	95.607	MGP_CAROLIEiJ_G0031142	Upf1	95	95.607	Mus_caroli
ENSDORG00000009984	Upf1	96	95.607	ENSMUSG00000058301	Upf1	95	95.607	Mus_musculus
ENSDORG00000009984	Upf1	96	95.607	MGP_PahariEiJ_G0021607	Upf1	95	95.607	Mus_pahari
ENSDORG00000009984	Upf1	96	95.607	MGP_SPRETEiJ_G0032260	Upf1	95	95.607	Mus_spretus
ENSDORG00000009984	Upf1	95	95.722	ENSMPUG00000015516	UPF1	95	94.678	Mustela_putorius_furo
ENSDORG00000009984	Upf1	95	95.722	ENSMLUG00000012122	UPF1	95	94.069	Myotis_lucifugus
ENSDORG00000009984	Upf1	97	95.088	ENSNGAG00000024107	Upf1	96	95.088	Nannospalax_galili
ENSDORG00000009984	Upf1	95	90.095	ENSNBRG00000000670	upf1	95	90.658	Neolamprologus_brichardi
ENSDORG00000009984	Upf1	94	90.394	ENSNBRG00000022069	-	100	90.394	Neolamprologus_brichardi
ENSDORG00000009984	Upf1	95	90.978	ENSNLEG00000006062	UPF1	100	90.978	Nomascus_leucogenys
ENSDORG00000009984	Upf1	78	88.258	ENSMEUG00000014146	-	79	88.258	Notamacropus_eugenii
ENSDORG00000009984	Upf1	95	87.844	ENSOPRG00000014018	UPF1	100	87.844	Ochotona_princeps
ENSDORG00000009984	Upf1	96	95.966	ENSODEG00000012426	UPF1	95	95.966	Octodon_degus
ENSDORG00000009984	Upf1	95	88.889	ENSONIG00000010452	upf1	95	90.141	Oreochromis_niloticus
ENSDORG00000009984	Upf1	95	91.358	ENSONIG00000012729	-	95	91.358	Oreochromis_niloticus
ENSDORG00000009984	Upf1	96	94.850	ENSOANG00000004568	UPF1	94	94.850	Ornithorhynchus_anatinus
ENSDORG00000009984	Upf1	95	90.883	ENSORLG00000008453	upf1	95	90.883	Oryzias_latipes
ENSDORG00000009984	Upf1	95	90.883	ENSORLG00020014758	upf1	95	90.883	Oryzias_latipes_hni
ENSDORG00000009984	Upf1	95	90.883	ENSORLG00015010165	upf1	100	86.994	Oryzias_latipes_hsok
ENSDORG00000009984	Upf1	95	91.073	ENSOMEG00000003665	upf1	95	91.073	Oryzias_melastigma
ENSDORG00000009984	Upf1	95	95.825	ENSOGAG00000012866	UPF1	95	94.949	Otolemur_garnettii
ENSDORG00000009984	Upf1	92	96.256	ENSOARG00000010739	UPF1	96	94.168	Ovis_aries
ENSDORG00000009984	Upf1	95	96.774	ENSPPAG00000043884	UPF1	99	94.664	Pan_paniscus
ENSDORG00000009984	Upf1	95	96.673	ENSPPRG00000023470	UPF1	95	95.612	Panthera_pardus
ENSDORG00000009984	Upf1	95	93.726	ENSPTIG00000010159	UPF1	99	93.726	Panthera_tigris_altaica
ENSDORG00000009984	Upf1	96	95.884	ENSPTRG00000010721	UPF1	95	95.884	Pan_troglodytes
ENSDORG00000009984	Upf1	96	95.884	ENSPANG00000008847	UPF1	95	95.884	Papio_anubis
ENSDORG00000009984	Upf1	89	90.606	ENSPKIG00000006069	upf1	94	90.606	Paramormyrops_kingsleyae
ENSDORG00000009984	Upf1	69	93.995	ENSPSIG00000009491	UPF1	100	93.995	Pelodiscus_sinensis
ENSDORG00000009984	Upf1	95	87.879	ENSPMGG00000017327	upf1	95	88.091	Periophthalmus_magnuspinnatus
ENSDORG00000009984	Upf1	96	95.794	ENSPEMG00000001085	Upf1	95	95.794	Peromyscus_maniculatus_bairdii
ENSDORG00000009984	Upf1	95	86.787	ENSPMAG00000001206	upf1	94	86.787	Petromyzon_marinus
ENSDORG00000009984	Upf1	95	94.962	ENSPCIG00000006156	UPF1	95	93.925	Phascolarctos_cinereus
ENSDORG00000009984	Upf1	95	88.335	ENSPLAG00000018155	-	95	88.335	Poecilia_latipinna
ENSDORG00000009984	Upf1	95	90.589	ENSPLAG00000016232	-	95	91.065	Poecilia_latipinna
ENSDORG00000009984	Upf1	95	88.826	ENSPMEG00000011443	-	95	88.826	Poecilia_mexicana
ENSDORG00000009984	Upf1	95	90.684	ENSPMEG00000016319	-	95	91.160	Poecilia_mexicana
ENSDORG00000009984	Upf1	95	88.805	ENSPREG00000009940	upf1	94	88.805	Poecilia_reticulata
ENSDORG00000009984	Upf1	95	90.399	ENSPREG00000011247	-	95	90.875	Poecilia_reticulata
ENSDORG00000009984	Upf1	96	90.739	ENSPPYG00000009752	UPF1	94	90.739	Pongo_abelii
ENSDORG00000009984	Upf1	67	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSDORG00000009984	Upf1	96	95.701	ENSPCOG00000023813	UPF1	95	95.701	Propithecus_coquereli
ENSDORG00000009984	Upf1	66	100.000	ENSPVAG00000003183	UPF1	64	100.000	Pteropus_vampyrus
ENSDORG00000009984	Upf1	95	91.263	ENSPNYG00000016731	-	95	91.263	Pundamilia_nyererei
ENSDORG00000009984	Upf1	95	88.422	ENSPNYG00000003694	upf1	95	89.671	Pundamilia_nyererei
ENSDORG00000009984	Upf1	95	91.556	ENSPNAG00000025614	upf1	95	92.125	Pygocentrus_nattereri
ENSDORG00000009984	Upf1	96	95.701	ENSRNOG00000020134	Upf1	95	95.701	Rattus_norvegicus
ENSDORG00000009984	Upf1	95	94.402	ENSRBIG00000013894	UPF1	98	95.027	Rhinopithecus_bieti
ENSDORG00000009984	Upf1	97	95.798	ENSRROG00000040935	UPF1	99	95.798	Rhinopithecus_roxellana
ENSDORG00000009984	Upf1	78	54.296	YMR080C	NAM7	88	54.296	Saccharomyces_cerevisiae
ENSDORG00000009984	Upf1	95	96.670	ENSSBOG00000023632	UPF1	98	95.163	Saimiri_boliviensis_boliviensis
ENSDORG00000009984	Upf1	95	95.825	ENSSHAG00000010499	UPF1	100	95.825	Sarcophilus_harrisii
ENSDORG00000009984	Upf1	95	93.352	ENSSFOG00015021095	upf1	99	93.352	Scleropages_formosus
ENSDORG00000009984	Upf1	95	87.734	ENSSMAG00000005055	upf1	95	88.587	Scophthalmus_maximus
ENSDORG00000009984	Upf1	95	91.358	ENSSMAG00000021018	-	95	91.453	Scophthalmus_maximus
ENSDORG00000009984	Upf1	95	88.598	ENSSDUG00000013320	upf1	95	89.626	Seriola_dumerili
ENSDORG00000009984	Upf1	95	91.548	ENSSDUG00000009629	-	95	91.643	Seriola_dumerili
ENSDORG00000009984	Upf1	95	91.548	ENSSLDG00000006878	-	95	91.643	Seriola_lalandi_dorsalis
ENSDORG00000009984	Upf1	95	89.434	ENSSLDG00000020868	upf1	95	89.925	Seriola_lalandi_dorsalis
ENSDORG00000009984	Upf1	95	94.677	ENSSPUG00000010538	UPF1	95	93.738	Sphenodon_punctatus
ENSDORG00000009984	Upf1	95	87.654	ENSSPAG00000000003	upf1	95	87.796	Stegastes_partitus
ENSDORG00000009984	Upf1	95	91.350	ENSSPAG00000011521	-	95	91.350	Stegastes_partitus
ENSDORG00000009984	Upf1	95	96.673	ENSSSCG00000039301	UPF1	99	95.627	Sus_scrofa
ENSDORG00000009984	Upf1	78	90.962	ENSTGUG00000001057	UPF1	91	95.624	Taeniopygia_guttata
ENSDORG00000009984	Upf1	95	89.479	ENSTRUG00000000150	upf1	95	89.479	Takifugu_rubripes
ENSDORG00000009984	Upf1	95	90.304	ENSTRUG00000005131	-	95	90.399	Takifugu_rubripes
ENSDORG00000009984	Upf1	96	90.994	ENSTTRG00000011544	UPF1	96	90.269	Tursiops_truncatus
ENSDORG00000009984	Upf1	95	95.627	ENSUAMG00000007093	UPF1	95	94.585	Ursus_americanus
ENSDORG00000009984	Upf1	97	95.527	ENSUMAG00000006652	UPF1	100	95.527	Ursus_maritimus
ENSDORG00000009984	Upf1	95	95.722	ENSVVUG00000007797	UPF1	95	94.678	Vulpes_vulpes
ENSDORG00000009984	Upf1	97	80.074	ENSXETG00000013602	upf1	96	79.301	Xenopus_tropicalis
ENSDORG00000009984	Upf1	94	90.787	ENSXCOG00000005764	-	100	91.267	Xiphophorus_couchianus
ENSDORG00000009984	Upf1	92	88.386	ENSXCOG00000015275	-	91	88.386	Xiphophorus_couchianus
ENSDORG00000009984	Upf1	95	88.699	ENSXMAG00000001703	-	95	88.699	Xiphophorus_maculatus
ENSDORG00000009984	Upf1	95	90.494	ENSXMAG00000002540	-	95	90.970	Xiphophorus_maculatus