EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000010106 (Gene tree)
Gene ID: 105999067
Gene Symbol: -
Alias: -
Full Name: ribonucleoprotein%2C PTB binding 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 14774 bases
Position: chrKN672526.1:582154-596927
Accession: 105999067
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000024177	RRM_1	PF00076.22	2.2e-28	1	3
ENSDORP00000024177	RRM_1	PF00076.22	2.2e-28	2	3
ENSDORP00000024177	RRM_1	PF00076.22	2.2e-28	3	3
ENSDORP00000009499	RRM_1	PF00076.22	3.4e-28	1	2
ENSDORP00000009499	RRM_1	PF00076.22	3.4e-28	2	2
ENSDORP00000020427	RRM_1	PF00076.22	5.4e-28	1	2
ENSDORP00000020427	RRM_1	PF00076.22	5.4e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000036571	-	1776	-	ENSDORP00000024177	591 (aa)	-	UPI000BAD01C5
ENSDORT00000010106	-	2154	XM_013033955	ENSDORP00000009499	717 (aa)	XP_012889409	UPI000BACFBDE
ENSDORT00000025397	-	2229	-	ENSDORP00000020427	742 (aa)	-	UPI000BAD27E8

Gene Model

Click here to download ENSDORG00000010106's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000010106's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000010106	-	70	48.357	ENSDORG00000002498	Raver2	54	49.373

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000010106	-	100	82.459	ENSG00000161847	RAVER1	93	94.382	Homo_sapiens
ENSDORG00000010106	-	71	60.373	ENSAPOG00000017267	raver1	51	61.501	Acanthochromis_polyacanthus
ENSDORG00000010106	-	100	82.058	ENSAMEG00000011738	RAVER1	98	82.586	Ailuropoda_melanoleuca
ENSDORG00000010106	-	71	60.140	ENSAOCG00000005128	raver1	66	53.125	Amphiprion_ocellaris
ENSDORG00000010106	-	71	60.140	ENSAPEG00000010854	raver1	64	63.158	Amphiprion_percula
ENSDORG00000010106	-	98	47.473	ENSATEG00000021004	raver1	55	61.557	Anabas_testudineus
ENSDORG00000010106	-	74	86.667	ENSACAG00000008386	-	67	86.667	Anolis_carolinensis
ENSDORG00000010106	-	100	80.845	ENSANAG00000028226	RAVER1	98	82.034	Aotus_nancymaae
ENSDORG00000010106	-	97	46.925	ENSACLG00000018492	raver1	69	53.452	Astatotilapia_calliptera
ENSDORG00000010106	-	78	78.333	ENSAMXG00000005132	raver1	85	72.222	Astyanax_mexicanus
ENSDORG00000010106	-	100	81.565	ENSBTAG00000015721	RAVER1	96	87.688	Bos_taurus
ENSDORG00000010106	-	100	81.110	ENSCJAG00000005671	RAVER1	98	82.299	Callithrix_jacchus
ENSDORG00000010106	-	100	82.759	ENSCAFG00000017861	RAVER1	98	83.687	Canis_familiaris
ENSDORG00000010106	-	100	82.759	ENSCAFG00020024449	RAVER1	100	83.687	Canis_lupus_dingo
ENSDORG00000010106	-	97	87.083	ENSCHIG00000006718	RAVER1	100	81.003	Capra_hircus
ENSDORG00000010106	-	89	81.481	ENSTSYG00000027107	RAVER1	100	80.109	Carlito_syrichta
ENSDORG00000010106	-	99	72.131	ENSCAPG00000002269	RAVER1	100	79.825	Cavia_aperea
ENSDORG00000010106	-	100	81.902	ENSCPOG00000001008	RAVER1	100	83.223	Cavia_porcellus
ENSDORG00000010106	-	100	81.481	ENSCCAG00000031723	RAVER1	98	82.275	Cebus_capucinus
ENSDORG00000010106	-	100	83.042	ENSCATG00000043863	RAVER1	98	84.657	Cercocebus_atys
ENSDORG00000010106	-	100	82.477	ENSCLAG00000009336	RAVER1	100	82.740	Chinchilla_lanigera
ENSDORG00000010106	-	100	82.540	ENSCSAG00000007317	RAVER1	84	83.333	Chlorocebus_sabaeus
ENSDORG00000010106	-	93	67.181	ENSCPBG00000005349	-	96	55.102	Chrysemys_picta_bellii
ENSDORG00000010106	-	100	83.176	ENSCANG00000008337	RAVER1	98	84.791	Colobus_angolensis_palliatus
ENSDORG00000010106	-	100	81.291	ENSCGRG00001013260	-	100	82.213	Cricetulus_griseus_chok1gshd
ENSDORG00000010106	-	100	81.291	ENSCGRG00000015138	-	100	82.213	Cricetulus_griseus_crigri
ENSDORG00000010106	-	74	80.392	ENSCSEG00000021092	raver1	63	80.392	Cynoglossus_semilaevis
ENSDORG00000010106	-	96	47.826	ENSCVAG00000013971	raver1	67	52.268	Cyprinodon_variegatus
ENSDORG00000010106	-	73	57.763	ENSDARG00000052617	raver1	70	69.643	Danio_rerio
ENSDORG00000010106	-	64	83.333	ENSDNOG00000035742	-	56	75.733	Dasypus_novemcinctus
ENSDORG00000010106	-	74	88.832	ENSETEG00000008201	-	80	88.832	Echinops_telfairi
ENSDORG00000010106	-	61	38.131	ENSEBUG00000003030	RAVER1	51	37.905	Eptatretus_burgeri
ENSDORG00000010106	-	100	76.040	ENSEASG00005010544	-	93	82.629	Equus_asinus_asinus
ENSDORG00000010106	-	100	82.649	ENSECAG00000024966	RAVER1	98	83.377	Equus_caballus
ENSDORG00000010106	-	97	48.493	ENSELUG00000023287	raver1	92	47.561	Esox_lucius
ENSDORG00000010106	-	100	83.773	ENSFCAG00000009435	RAVER1	98	84.301	Felis_catus
ENSDORG00000010106	-	100	81.950	ENSFDAG00000015113	RAVER1	100	82.213	Fukomys_damarensis
ENSDORG00000010106	-	83	54.633	ENSGMOG00000003649	raver1	82	57.732	Gadus_morhua
ENSDORG00000010106	-	66	44.717	ENSGALG00000050608	-	53	41.829	Gallus_gallus
ENSDORG00000010106	-	97	47.978	ENSGAFG00000015944	raver1	68	52.068	Gambusia_affinis
ENSDORG00000010106	-	81	62.703	ENSGACG00000013818	raver1	66	62.821	Gasterosteus_aculeatus
ENSDORG00000010106	-	83	72.881	ENSGAGG00000011748	-	98	66.584	Gopherus_agassizii
ENSDORG00000010106	-	100	82.011	ENSGGOG00000006015	RAVER1	98	82.540	Gorilla_gorilla
ENSDORG00000010106	-	95	46.866	ENSHBUG00000021210	raver1	69	53.452	Haplochromis_burtoni
ENSDORG00000010106	-	100	81.950	ENSHGLG00000015460	RAVER1	100	81.818	Heterocephalus_glaber_female
ENSDORG00000010106	-	100	81.950	ENSHGLG00100000812	RAVER1	100	81.818	Heterocephalus_glaber_male
ENSDORG00000010106	-	98	46.649	ENSHCOG00000000449	raver1	55	61.314	Hippocampus_comes
ENSDORG00000010106	-	98	48.108	ENSIPUG00000013153	raver1	83	57.843	Ictalurus_punctatus
ENSDORG00000010106	-	100	83.355	ENSSTOG00000003241	RAVER1	100	84.016	Ictidomys_tridecemlineatus
ENSDORG00000010106	-	100	82.260	ENSJJAG00000018219	-	100	82.523	Jaculus_jaculus
ENSDORG00000010106	-	98	46.702	ENSKMAG00000017355	raver1	93	46.729	Kryptolebias_marmoratus
ENSDORG00000010106	-	69	61.538	ENSLBEG00000008268	raver1	70	54.118	Labrus_bergylta
ENSDORG00000010106	-	90	54.278	ENSLACG00000005809	-	99	55.230	Latimeria_chalumnae
ENSDORG00000010106	-	96	50.256	ENSLOCG00000007500	raver1	94	50.590	Lepisosteus_oculatus
ENSDORG00000010106	-	100	81.818	ENSLAFG00000003664	-	100	81.423	Loxodonta_africana
ENSDORG00000010106	-	100	82.638	ENSMFAG00000037977	RAVER1	98	84.253	Macaca_fascicularis
ENSDORG00000010106	-	100	82.275	ENSMMUG00000014897	RAVER1	98	83.069	Macaca_mulatta
ENSDORG00000010106	-	100	82.907	ENSMNEG00000028390	RAVER1	98	84.522	Macaca_nemestrina
ENSDORG00000010106	-	100	82.907	ENSMLEG00000041959	RAVER1	98	84.657	Mandrillus_leucophaeus
ENSDORG00000010106	-	79	59.524	ENSMAMG00000012059	raver1	93	46.649	Mastacembelus_armatus
ENSDORG00000010106	-	96	47.099	ENSMZEG00005019002	raver1	69	53.452	Maylandia_zebra
ENSDORG00000010106	-	100	79.632	ENSMAUG00000017948	-	100	81.209	Mesocricetus_auratus
ENSDORG00000010106	-	99	81.806	ENSMICG00000010326	RAVER1	99	82.470	Microcebus_murinus
ENSDORG00000010106	-	100	80.764	ENSMOCG00000015553	-	100	81.686	Microtus_ochrogaster
ENSDORG00000010106	-	98	47.626	ENSMMOG00000012093	raver1	67	54.331	Mola_mola
ENSDORG00000010106	-	93	74.848	ENSMODG00000005584	-	89	68.928	Monodelphis_domestica
ENSDORG00000010106	-	98	46.338	ENSMALG00000016569	raver1	67	62.278	Monopterus_albus
ENSDORG00000010106	-	100	79.477	MGP_CAROLIEiJ_G0031860	-	100	80.523	Mus_caroli
ENSDORG00000010106	-	100	79.739	ENSMUSG00000010205	Raver1	100	80.784	Mus_musculus
ENSDORG00000010106	-	100	79.324	MGP_PahariEiJ_G0014726	-	100	79.974	Mus_pahari
ENSDORG00000010106	-	100	79.608	MGP_SPRETEiJ_G0032984	-	100	80.654	Mus_spretus
ENSDORG00000010106	-	100	83.113	ENSMPUG00000006712	RAVER1	98	83.641	Mustela_putorius_furo
ENSDORG00000010106	-	100	81.034	ENSMLUG00000012328	RAVER1	100	81.698	Myotis_lucifugus
ENSDORG00000010106	-	100	81.300	ENSNGAG00000001260	-	100	81.963	Nannospalax_galili
ENSDORG00000010106	-	97	41.901	ENSNBRG00000010139	raver1	65	48.941	Neolamprologus_brichardi
ENSDORG00000010106	-	100	81.878	ENSNLEG00000012181	RAVER1	98	82.937	Nomascus_leucogenys
ENSDORG00000010106	-	90	66.569	ENSMEUG00000003281	-	100	67.742	Notamacropus_eugenii
ENSDORG00000010106	-	100	82.345	ENSODEG00000016260	RAVER1	100	81.818	Octodon_degus
ENSDORG00000010106	-	97	47.503	ENSONIG00000001559	raver1	86	63.325	Oreochromis_niloticus
ENSDORG00000010106	-	100	76.923	ENSOCUG00000020918	RAVER1	100	75.497	Oryctolagus_cuniculus
ENSDORG00000010106	-	68	62.228	ENSORLG00000005458	raver1	66	63.104	Oryzias_latipes
ENSDORG00000010106	-	68	61.985	ENSORLG00020004392	raver1	64	64.304	Oryzias_latipes_hni
ENSDORG00000010106	-	75	58.425	ENSORLG00015017222	raver1	66	62.850	Oryzias_latipes_hsok
ENSDORG00000010106	-	98	46.695	ENSOMEG00000023956	raver1	66	81.633	Oryzias_melastigma
ENSDORG00000010106	-	100	82.228	ENSOGAG00000011071	RAVER1	98	82.759	Otolemur_garnettii
ENSDORG00000010106	-	100	77.676	ENSOARG00000015886	RAVER1	98	79.551	Ovis_aries
ENSDORG00000010106	-	100	82.275	ENSPPAG00000002611	RAVER1	98	82.804	Pan_paniscus
ENSDORG00000010106	-	100	84.169	ENSPPRG00000009912	RAVER1	98	84.697	Panthera_pardus
ENSDORG00000010106	-	100	82.275	ENSPTRG00000010466	RAVER1	98	82.804	Pan_troglodytes
ENSDORG00000010106	-	100	82.907	ENSPANG00000004122	RAVER1	98	84.522	Papio_anubis
ENSDORG00000010106	-	100	81.184	ENSPEMG00000016411	-	100	81.974	Peromyscus_maniculatus_bairdii
ENSDORG00000010106	-	98	76.349	ENSPCIG00000018695	-	99	78.808	Phascolarctos_cinereus
ENSDORG00000010106	-	96	47.446	ENSPFOG00000007016	raver1	55	61.985	Poecilia_formosa
ENSDORG00000010106	-	57	80.000	ENSPLAG00000020793	raver1	57	80.000	Poecilia_latipinna
ENSDORG00000010106	-	96	48.840	ENSPMEG00000011220	raver1	64	64.474	Poecilia_mexicana
ENSDORG00000010106	-	71	88.372	ENSPREG00000006864	raver1	76	88.372	Poecilia_reticulata
ENSDORG00000010106	-	100	81.192	ENSPPYG00000010514	RAVER1	84	82.275	Pongo_abelii
ENSDORG00000010106	-	100	82.763	ENSPCOG00000026605	RAVER1	98	83.684	Propithecus_coquereli
ENSDORG00000010106	-	100	83.024	ENSPVAG00000003689	RAVER1	100	83.024	Pteropus_vampyrus
ENSDORG00000010106	-	56	82.353	ENSPNYG00000013284	raver1	59	82.353	Pundamilia_nyererei
ENSDORG00000010106	-	96	48.693	ENSPNAG00000015476	raver1	67	54.224	Pygocentrus_nattereri
ENSDORG00000010106	-	100	79.608	ENSRNOG00000020710	Raver1	100	80.523	Rattus_norvegicus
ENSDORG00000010106	-	100	83.311	ENSRBIG00000034702	RAVER1	98	84.657	Rhinopithecus_bieti
ENSDORG00000010106	-	100	83.042	ENSRROG00000031186	RAVER1	98	84.657	Rhinopithecus_roxellana
ENSDORG00000010106	-	100	80.000	ENSSBOG00000023423	RAVER1	98	80.397	Saimiri_boliviensis_boliviensis
ENSDORG00000010106	-	90	67.681	ENSSHAG00000008181	-	90	68.696	Sarcophilus_harrisii
ENSDORG00000010106	-	65	62.060	ENSSMAG00000004546	raver1	67	53.295	Scophthalmus_maximus
ENSDORG00000010106	-	98	47.568	ENSSDUG00000021063	raver1	93	47.306	Seriola_dumerili
ENSDORG00000010106	-	68	62.287	ENSSLDG00000014505	raver1	93	46.684	Seriola_lalandi_dorsalis
ENSDORG00000010106	-	68	62.136	ENSSPAG00000000688	raver1	64	64.362	Stegastes_partitus
ENSDORG00000010106	-	100	83.730	ENSSSCG00000013650	-	100	82.361	Sus_scrofa
ENSDORG00000010106	-	98	47.473	ENSTRUG00000025641	raver1	80	57.000	Takifugu_rubripes
ENSDORG00000010106	-	100	83.952	ENSTTRG00000009552	RAVER1	100	84.615	Tursiops_truncatus
ENSDORG00000010106	-	100	84.169	ENSUAMG00000020385	RAVER1	98	84.697	Ursus_americanus
ENSDORG00000010106	-	100	82.759	ENSVVUG00000028976	RAVER1	98	83.422	Vulpes_vulpes
ENSDORG00000010106	-	100	50.196	ENSXETG00000011622	raver1	100	50.066	Xenopus_tropicalis
ENSDORG00000010106	-	96	46.995	ENSXCOG00000016368	raver1	61	65.205	Xiphophorus_couchianus
ENSDORG00000010106	-	96	47.131	ENSXMAG00000000217	raver1	65	53.200	Xiphophorus_maculatus