EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000010382 (Gene tree)
Gene ID: 105996525
Gene Symbol: Smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 35152 bases
Position: chrKN672477.1:4701673-4736824
Accession: 105996525
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000009759	EST1	PF10374.9	2.8e-24	1	1
ENSDORP00000009759	EST1_DNA_bind	PF10373.9	9.4e-43	1	2
ENSDORP00000009759	EST1_DNA_bind	PF10373.9	9.4e-43	2	2
ENSDORP00000009759	PIN_4	PF13638.6	5.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000010385	-	4541	XM_013030651	ENSDORP00000009759	1017 (aa)	XP_012886105	A0A1S3GBB0

Gene Model

Click here to download ENSDORG00000010382's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000010382's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000010382	Smg5	100	93.811	ENSG00000198952	SMG5	100	94.008	Homo_sapiens
ENSDORG00000010382	Smg5	99	66.926	ENSAPOG00000019690	smg5	99	67.220	Acanthochromis_polyacanthus
ENSDORG00000010382	Smg5	98	90.352	ENSAMEG00000014458	SMG5	100	90.151	Ailuropoda_melanoleuca
ENSDORG00000010382	Smg5	99	64.689	ENSACIG00000001353	smg5	99	66.027	Amphilophus_citrinellus
ENSDORG00000010382	Smg5	98	65.059	ENSAOCG00000019483	smg5	99	62.155	Amphiprion_ocellaris
ENSDORG00000010382	Smg5	98	66.006	ENSAPEG00000022949	smg5	98	66.036	Amphiprion_percula
ENSDORG00000010382	Smg5	99	66.085	ENSATEG00000005348	smg5	99	66.926	Anabas_testudineus
ENSDORG00000010382	Smg5	98	78.092	ENSAPLG00000010263	SMG5	100	77.897	Anas_platyrhynchos
ENSDORG00000010382	Smg5	100	93.418	ENSANAG00000032899	SMG5	100	94.106	Aotus_nancymaae
ENSDORG00000010382	Smg5	99	64.525	ENSACLG00000009311	smg5	99	66.411	Astatotilapia_calliptera
ENSDORG00000010382	Smg5	99	44.058	ENSBTAG00000021747	-	99	43.714	Bos_taurus
ENSDORG00000010382	Smg5	100	93.026	ENSBTAG00000009435	SMG5	100	93.320	Bos_taurus
ENSDORG00000010382	Smg5	100	93.418	ENSCJAG00000005684	SMG5	100	94.106	Callithrix_jacchus
ENSDORG00000010382	Smg5	100	91.642	ENSCAFG00000016839	SMG5	100	91.364	Canis_familiaris
ENSDORG00000010382	Smg5	100	91.642	ENSCAFG00020006061	SMG5	100	91.364	Canis_lupus_dingo
ENSDORG00000010382	Smg5	99	44.444	ENSCHIG00000006323	-	99	43.988	Capra_hircus
ENSDORG00000010382	Smg5	100	93.124	ENSCHIG00000007709	SMG5	100	92.927	Capra_hircus
ENSDORG00000010382	Smg5	100	93.229	ENSTSYG00000004099	SMG5	100	93.621	Carlito_syrichta
ENSDORG00000010382	Smg5	97	73.151	ENSCAPG00000003631	SMG5	100	74.274	Cavia_aperea
ENSDORG00000010382	Smg5	100	93.621	ENSCPOG00000015696	SMG5	100	94.406	Cavia_porcellus
ENSDORG00000010382	Smg5	100	93.418	ENSCCAG00000027409	SMG5	100	94.106	Cebus_capucinus
ENSDORG00000010382	Smg5	100	93.713	ENSCATG00000030539	SMG5	100	93.910	Cercocebus_atys
ENSDORG00000010382	Smg5	100	94.112	ENSCLAG00000003983	SMG5	100	94.897	Chinchilla_lanigera
ENSDORG00000010382	Smg5	100	93.615	ENSCSAG00000002120	SMG5	100	93.811	Chlorocebus_sabaeus
ENSDORG00000010382	Smg5	54	89.455	ENSCHOG00000008741	-	57	89.455	Choloepus_hoffmanni
ENSDORG00000010382	Smg5	94	77.102	ENSCPBG00000025848	SMG5	100	77.429	Chrysemys_picta_bellii
ENSDORG00000010382	Smg5	94	34.729	ENSCING00000008706	-	99	34.760	Ciona_intestinalis
ENSDORG00000010382	Smg5	100	89.784	ENSCANG00000029208	SMG5	100	90.177	Colobus_angolensis_palliatus
ENSDORG00000010382	Smg5	100	91.159	ENSCGRG00001006336	Smg5	100	91.552	Cricetulus_griseus_chok1gshd
ENSDORG00000010382	Smg5	98	91.147	ENSCGRG00000005111	Smg5	100	91.541	Cricetulus_griseus_crigri
ENSDORG00000010382	Smg5	99	64.694	ENSCSEG00000014220	smg5	99	65.403	Cynoglossus_semilaevis
ENSDORG00000010382	Smg5	99	60.798	ENSCVAG00000000529	smg5	99	61.397	Cyprinodon_variegatus
ENSDORG00000010382	Smg5	100	89.489	ENSDNOG00000000051	SMG5	100	89.686	Dasypus_novemcinctus
ENSDORG00000010382	Smg5	92	36.786	ENSDNOG00000039862	-	100	36.814	Dasypus_novemcinctus
ENSDORG00000010382	Smg5	66	35.526	FBgn0019890	Smg5	62	35.526	Drosophila_melanogaster
ENSDORG00000010382	Smg5	82	95.146	ENSETEG00000010336	SMG5	84	95.146	Echinops_telfairi
ENSDORG00000010382	Smg5	90	48.250	ENSEBUG00000003739	smg5	98	48.038	Eptatretus_burgeri
ENSDORG00000010382	Smg5	100	93.811	ENSEASG00005019122	SMG5	100	93.713	Equus_asinus_asinus
ENSDORG00000010382	Smg5	100	93.811	ENSECAG00000001389	SMG5	100	93.713	Equus_caballus
ENSDORG00000010382	Smg5	72	98.559	ENSEEUG00000012690	SMG5	73	98.559	Erinaceus_europaeus
ENSDORG00000010382	Smg5	99	65.448	ENSELUG00000012585	smg5	99	65.700	Esox_lucius
ENSDORG00000010382	Smg5	100	91.454	ENSFCAG00000011783	SMG5	100	91.176	Felis_catus
ENSDORG00000010382	Smg5	58	81.697	ENSFALG00000001166	-	99	81.803	Ficedula_albicollis
ENSDORG00000010382	Smg5	98	92.254	ENSFDAG00000017388	SMG5	100	92.455	Fukomys_damarensis
ENSDORG00000010382	Smg5	97	61.857	ENSFHEG00000013939	smg5	100	61.212	Fundulus_heteroclitus
ENSDORG00000010382	Smg5	99	60.439	ENSGMOG00000007310	smg5	99	61.053	Gadus_morhua
ENSDORG00000010382	Smg5	99	77.746	ENSGALG00000029918	-	100	77.260	Gallus_gallus
ENSDORG00000010382	Smg5	50	53.700	ENSGAFG00000021691	smg5	96	67.093	Gambusia_affinis
ENSDORG00000010382	Smg5	100	78.863	ENSGAGG00000016131	SMG5	100	78.673	Gopherus_agassizii
ENSDORG00000010382	Smg5	100	93.615	ENSGGOG00000010932	SMG5	100	94.303	Gorilla_gorilla
ENSDORG00000010382	Smg5	99	64.292	ENSHBUG00000008654	smg5	99	65.717	Haplochromis_burtoni
ENSDORG00000010382	Smg5	100	92.051	ENSHGLG00000019152	SMG5	100	92.247	Heterocephalus_glaber_female
ENSDORG00000010382	Smg5	90	92.341	ENSHGLG00100015948	SMG5	99	92.560	Heterocephalus_glaber_male
ENSDORG00000010382	Smg5	86	74.083	ENSHCOG00000010229	smg5	83	75.556	Hippocampus_comes
ENSDORG00000010382	Smg5	50	59.300	ENSIPUG00000006624	Smg5	99	62.602	Ictalurus_punctatus
ENSDORG00000010382	Smg5	100	93.713	ENSSTOG00000001780	SMG5	100	93.910	Ictidomys_tridecemlineatus
ENSDORG00000010382	Smg5	100	92.843	ENSJJAG00000022763	Smg5	100	92.843	Jaculus_jaculus
ENSDORG00000010382	Smg5	99	65.481	ENSLBEG00000002145	smg5	99	66.023	Labrus_bergylta
ENSDORG00000010382	Smg5	100	64.482	ENSLACG00000010521	SMG5	100	64.482	Latimeria_chalumnae
ENSDORG00000010382	Smg5	96	78.638	ENSLOCG00000008380	smg5	99	61.838	Lepisosteus_oculatus
ENSDORG00000010382	Smg5	100	92.043	ENSLAFG00000006241	SMG5	100	92.240	Loxodonta_africana
ENSDORG00000010382	Smg5	100	93.615	ENSMFAG00000045357	SMG5	100	93.811	Macaca_fascicularis
ENSDORG00000010382	Smg5	100	93.517	ENSMMUG00000000090	SMG5	100	93.713	Macaca_mulatta
ENSDORG00000010382	Smg5	100	93.517	ENSMNEG00000044425	SMG5	100	93.713	Macaca_nemestrina
ENSDORG00000010382	Smg5	100	87.378	ENSMLEG00000041192	SMG5	100	87.573	Mandrillus_leucophaeus
ENSDORG00000010382	Smg5	99	61.106	ENSMAMG00000010683	smg5	100	61.626	Mastacembelus_armatus
ENSDORG00000010382	Smg5	63	58.408	ENSMZEG00005016543	smg5	100	59.098	Maylandia_zebra
ENSDORG00000010382	Smg5	99	63.083	ENSMZEG00005015815	smg5	99	64.695	Maylandia_zebra
ENSDORG00000010382	Smg5	55	44.251	ENSMAUG00000000043	-	96	44.444	Mesocricetus_auratus
ENSDORG00000010382	Smg5	100	90.963	ENSMAUG00000010381	Smg5	100	91.356	Mesocricetus_auratus
ENSDORG00000010382	Smg5	100	93.713	ENSMICG00000002257	SMG5	100	94.401	Microcebus_murinus
ENSDORG00000010382	Smg5	100	90.294	ENSMOCG00000016590	Smg5	100	89.902	Microtus_ochrogaster
ENSDORG00000010382	Smg5	99	59.409	ENSMMOG00000017199	smg5	99	60.340	Mola_mola
ENSDORG00000010382	Smg5	87	88.526	ENSMODG00000016901	SMG5	98	89.314	Monodelphis_domestica
ENSDORG00000010382	Smg5	78	37.940	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSDORG00000010382	Smg5	76	37.028	ENSMODG00000010675	-	84	37.135	Monodelphis_domestica
ENSDORG00000010382	Smg5	97	34.182	ENSMODG00000004511	-	99	33.951	Monodelphis_domestica
ENSDORG00000010382	Smg5	75	38.845	ENSMODG00000004735	-	86	38.933	Monodelphis_domestica
ENSDORG00000010382	Smg5	99	60.587	ENSMALG00000010375	smg5	99	60.089	Monopterus_albus
ENSDORG00000010382	Smg5	100	91.061	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSDORG00000010382	Smg5	100	91.061	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSDORG00000010382	Smg5	100	90.882	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSDORG00000010382	Smg5	100	90.864	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSDORG00000010382	Smg5	94	90.221	ENSMPUG00000004546	SMG5	100	90.346	Mustela_putorius_furo
ENSDORG00000010382	Smg5	100	92.759	ENSMLUG00000008518	SMG5	100	92.564	Myotis_lucifugus
ENSDORG00000010382	Smg5	98	44.233	ENSNGAG00000012101	-	98	44.742	Nannospalax_galili
ENSDORG00000010382	Smg5	100	92.141	ENSNGAG00000020706	Smg5	100	92.141	Nannospalax_galili
ENSDORG00000010382	Smg5	96	63.333	ENSNBRG00000004332	smg5	98	64.228	Neolamprologus_brichardi
ENSDORG00000010382	Smg5	100	93.222	ENSNLEG00000012439	SMG5	100	93.910	Nomascus_leucogenys
ENSDORG00000010382	Smg5	100	87.033	ENSMEUG00000012834	SMG5	100	86.444	Notamacropus_eugenii
ENSDORG00000010382	Smg5	100	92.436	ENSOPRG00000009152	SMG5	100	92.633	Ochotona_princeps
ENSDORG00000010382	Smg5	100	93.713	ENSODEG00000012237	SMG5	100	93.811	Octodon_degus
ENSDORG00000010382	Smg5	89	41.202	ENSOCUG00000023338	-	99	41.009	Oryctolagus_cuniculus
ENSDORG00000010382	Smg5	98	93.662	ENSOCUG00000012886	SMG5	100	93.260	Oryctolagus_cuniculus
ENSDORG00000010382	Smg5	99	64.786	ENSORLG00020013127	smg5	99	65.984	Oryzias_latipes_hni
ENSDORG00000010382	Smg5	99	64.500	ENSORLG00015019014	smg5	99	65.986	Oryzias_latipes_hsok
ENSDORG00000010382	Smg5	52	72.167	ENSOMEG00000021330	smg5	92	60.192	Oryzias_melastigma
ENSDORG00000010382	Smg5	100	91.650	ENSOGAG00000004966	SMG5	100	92.338	Otolemur_garnettii
ENSDORG00000010382	Smg5	99	44.390	ENSOARG00000011963	-	99	43.988	Ovis_aries
ENSDORG00000010382	Smg5	100	93.222	ENSOARG00000005778	SMG5	100	93.026	Ovis_aries
ENSDORG00000010382	Smg5	100	93.320	ENSPPAG00000011996	SMG5	100	94.008	Pan_paniscus
ENSDORG00000010382	Smg5	98	91.239	ENSPPRG00000011901	SMG5	100	90.955	Panthera_pardus
ENSDORG00000010382	Smg5	99	83.101	ENSPTIG00000007892	SMG5	98	83.855	Panthera_tigris_altaica
ENSDORG00000010382	Smg5	100	93.517	ENSPTRG00000023925	SMG5	100	94.204	Pan_troglodytes
ENSDORG00000010382	Smg5	100	93.517	ENSPTRG00000049282	-	100	94.204	Pan_troglodytes
ENSDORG00000010382	Smg5	100	93.713	ENSPANG00000011201	SMG5	100	93.910	Papio_anubis
ENSDORG00000010382	Smg5	99	65.192	ENSPKIG00000009402	smg5	99	66.181	Paramormyrops_kingsleyae
ENSDORG00000010382	Smg5	98	79.763	ENSPSIG00000015198	SMG5	100	79.269	Pelodiscus_sinensis
ENSDORG00000010382	Smg5	99	60.275	ENSPMGG00000010465	smg5	99	60.350	Periophthalmus_magnuspinnatus
ENSDORG00000010382	Smg5	56	45.775	ENSPEMG00000010022	-	95	44.560	Peromyscus_maniculatus_bairdii
ENSDORG00000010382	Smg5	100	91.061	ENSPEMG00000001819	Smg5	100	91.454	Peromyscus_maniculatus_bairdii
ENSDORG00000010382	Smg5	99	50.193	ENSPMAG00000000410	smg5	100	50.427	Petromyzon_marinus
ENSDORG00000010382	Smg5	100	88.518	ENSPCIG00000018938	SMG5	100	89.205	Phascolarctos_cinereus
ENSDORG00000010382	Smg5	50	60.958	ENSPFOG00000010191	smg5	99	62.623	Poecilia_formosa
ENSDORG00000010382	Smg5	50	60.967	ENSPLAG00000009332	smg5	99	62.444	Poecilia_latipinna
ENSDORG00000010382	Smg5	99	66.315	ENSPMEG00000014105	smg5	99	66.603	Poecilia_mexicana
ENSDORG00000010382	Smg5	93	76.018	ENSPREG00000017713	smg5	99	62.444	Poecilia_reticulata
ENSDORG00000010382	Smg5	100	93.615	ENSPPYG00000000723	SMG5	100	94.303	Pongo_abelii
ENSDORG00000010382	Smg5	81	85.232	ENSPCAG00000008412	SMG5	81	97.238	Procavia_capensis
ENSDORG00000010382	Smg5	100	93.320	ENSPCOG00000004741	SMG5	100	94.008	Propithecus_coquereli
ENSDORG00000010382	Smg5	100	84.071	ENSPVAG00000016748	SMG5	100	84.971	Pteropus_vampyrus
ENSDORG00000010382	Smg5	99	56.095	ENSPNYG00000013397	smg5	99	61.504	Pundamilia_nyererei
ENSDORG00000010382	Smg5	99	62.376	ENSPNAG00000028363	smg5	99	62.681	Pygocentrus_nattereri
ENSDORG00000010382	Smg5	100	91.257	ENSRNOG00000019590	Smg5	100	91.650	Rattus_norvegicus
ENSDORG00000010382	Smg5	100	93.418	ENSRBIG00000027428	SMG5	100	93.615	Rhinopithecus_bieti
ENSDORG00000010382	Smg5	100	93.320	ENSRROG00000030035	SMG5	100	93.517	Rhinopithecus_roxellana
ENSDORG00000010382	Smg5	100	93.517	ENSSBOG00000033339	SMG5	100	94.204	Saimiri_boliviensis_boliviensis
ENSDORG00000010382	Smg5	98	87.800	ENSSHAG00000014163	SMG5	100	88.500	Sarcophilus_harrisii
ENSDORG00000010382	Smg5	99	33.685	ENSSHAG00000009572	-	80	42.260	Sarcophilus_harrisii
ENSDORG00000010382	Smg5	86	39.633	ENSSHAG00000000561	-	96	39.633	Sarcophilus_harrisii
ENSDORG00000010382	Smg5	64	39.766	ENSSHAG00000000935	-	92	40.854	Sarcophilus_harrisii
ENSDORG00000010382	Smg5	99	65.861	ENSSFOG00015024175	smg5	99	66.248	Scleropages_formosus
ENSDORG00000010382	Smg5	99	60.230	ENSSMAG00000013059	smg5	99	62.299	Scophthalmus_maximus
ENSDORG00000010382	Smg5	99	59.859	ENSSDUG00000007122	smg5	99	61.416	Seriola_dumerili
ENSDORG00000010382	Smg5	99	59.912	ENSSLDG00000011418	smg5	99	61.723	Seriola_lalandi_dorsalis
ENSDORG00000010382	Smg5	90	78.672	ENSSARG00000012484	SMG5	100	78.999	Sorex_araneus
ENSDORG00000010382	Smg5	94	76.791	ENSSPUG00000002260	SMG5	100	76.186	Sphenodon_punctatus
ENSDORG00000010382	Smg5	93	75.395	ENSSPAG00000014266	smg5	98	65.322	Stegastes_partitus
ENSDORG00000010382	Smg5	100	94.499	ENSSSCG00000006490	-	100	94.853	Sus_scrofa
ENSDORG00000010382	Smg5	99	73.130	ENSSSCG00000039308	-	100	73.228	Sus_scrofa
ENSDORG00000010382	Smg5	99	79.862	ENSTGUG00000003748	-	100	79.727	Taeniopygia_guttata
ENSDORG00000010382	Smg5	99	65.063	ENSTRUG00000012580	smg5	99	64.196	Takifugu_rubripes
ENSDORG00000010382	Smg5	99	65.247	ENSTNIG00000010303	smg5	99	65.019	Tetraodon_nigroviridis
ENSDORG00000010382	Smg5	60	99.507	ENSTBEG00000002777	SMG5	60	99.507	Tupaia_belangeri
ENSDORG00000010382	Smg5	100	89.489	ENSTTRG00000001401	SMG5	100	89.096	Tursiops_truncatus
ENSDORG00000010382	Smg5	100	91.052	ENSUAMG00000013721	SMG5	100	90.775	Ursus_americanus
ENSDORG00000010382	Smg5	98	86.546	ENSUMAG00000018041	SMG5	97	86.273	Ursus_maritimus
ENSDORG00000010382	Smg5	98	84.189	ENSVPAG00000009446	SMG5	99	83.787	Vicugna_pacos
ENSDORG00000010382	Smg5	100	92.043	ENSVVUG00000005887	SMG5	100	91.266	Vulpes_vulpes
ENSDORG00000010382	Smg5	77	64.875	ENSXETG00000033791	SMG5	99	65.578	Xenopus_tropicalis
ENSDORG00000010382	Smg5	99	66.021	ENSXMAG00000013499	smg5	99	66.314	Xiphophorus_maculatus