EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000010431 (Gene tree)
Gene ID: 105986568
Gene Symbol: Trub1
Alias: -
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 25777 bases
Position: chrKN672382.1:15154470-15180246
Accession: 105986568
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000009803	TruB_N	PF01509.18	9.5e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000010431	-	1814	XM_013017565	ENSDORP00000009803	346 (aa)	XP_012873019	A0A1S3FAF6

Gene Model

Click here to download ENSDORG00000010431's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000010431's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000010431	Trub1	99	87.966	ENSG00000165832	TRUB1	99	88.825	Homo_sapiens
ENSDORG00000010431	Trub1	71	67.347	ENSAPOG00000020565	trub1	87	68.201	Acanthochromis_polyacanthus
ENSDORG00000010431	Trub1	87	94.059	ENSAMEG00000014931	TRUB1	99	89.174	Ailuropoda_melanoleuca
ENSDORG00000010431	Trub1	71	61.789	ENSACIG00000003060	trub1	80	62.762	Amphilophus_citrinellus
ENSDORG00000010431	Trub1	71	67.347	ENSAOCG00000017188	trub1	87	68.201	Amphiprion_ocellaris
ENSDORG00000010431	Trub1	71	66.667	ENSAPEG00000015209	trub1	87	67.782	Amphiprion_percula
ENSDORG00000010431	Trub1	70	68.182	ENSATEG00000023291	trub1	84	68.085	Anabas_testudineus
ENSDORG00000010431	Trub1	79	75.273	ENSAPLG00000006808	TRUB1	95	75.758	Anas_platyrhynchos
ENSDORG00000010431	Trub1	78	71.375	ENSACAG00000009282	TRUB1	93	71.429	Anolis_carolinensis
ENSDORG00000010431	Trub1	95	90.419	ENSANAG00000022870	TRUB1	99	89.685	Aotus_nancymaae
ENSDORG00000010431	Trub1	73	65.873	ENSACLG00000000823	trub1	88	66.939	Astatotilapia_calliptera
ENSDORG00000010431	Trub1	78	64.444	ENSAMXG00000015845	trub1	85	66.142	Astyanax_mexicanus
ENSDORG00000010431	Trub1	87	93.709	ENSBTAG00000012955	TRUB1	99	88.252	Bos_taurus
ENSDORG00000010431	Trub1	99	88.857	ENSCJAG00000047815	TRUB1	99	89.429	Callithrix_jacchus
ENSDORG00000010431	Trub1	99	87.679	ENSCAFG00000011688	TRUB1	99	88.539	Canis_familiaris
ENSDORG00000010431	Trub1	99	88.252	ENSCAFG00020013237	TRUB1	99	88.825	Canis_lupus_dingo
ENSDORG00000010431	Trub1	87	94.040	ENSCHIG00000020884	TRUB1	100	87.749	Capra_hircus
ENSDORG00000010431	Trub1	99	86.286	ENSTSYG00000000446	TRUB1	99	87.143	Carlito_syrichta
ENSDORG00000010431	Trub1	73	84.190	ENSCAPG00000017088	TRUB1	99	84.190	Cavia_aperea
ENSDORG00000010431	Trub1	68	83.682	ENSCPOG00000040236	-	98	84.937	Cavia_porcellus
ENSDORG00000010431	Trub1	56	92.308	ENSCPOG00000030129	-	70	93.855	Cavia_porcellus
ENSDORG00000010431	Trub1	87	94.684	ENSCCAG00000028842	TRUB1	99	88.571	Cebus_capucinus
ENSDORG00000010431	Trub1	99	88.252	ENSCATG00000033431	TRUB1	99	89.398	Cercocebus_atys
ENSDORG00000010431	Trub1	68	88.285	ENSCLAG00000008664	TRUB1	98	88.703	Chinchilla_lanigera
ENSDORG00000010431	Trub1	99	88.539	ENSCSAG00000004891	TRUB1	99	89.685	Chlorocebus_sabaeus
ENSDORG00000010431	Trub1	100	74.571	ENSCHOG00000011931	TRUB1	100	75.143	Choloepus_hoffmanni
ENSDORG00000010431	Trub1	79	78.309	ENSCPBG00000003051	TRUB1	91	77.652	Chrysemys_picta_bellii
ENSDORG00000010431	Trub1	99	88.539	ENSCANG00000029445	TRUB1	99	89.685	Colobus_angolensis_palliatus
ENSDORG00000010431	Trub1	81	79.004	ENSCGRG00001010322	-	76	79.004	Cricetulus_griseus_chok1gshd
ENSDORG00000010431	Trub1	74	87.451	ENSCGRG00001016772	-	85	87.160	Cricetulus_griseus_chok1gshd
ENSDORG00000010431	Trub1	81	88.256	ENSCGRG00000010806	Trub1	98	83.540	Cricetulus_griseus_crigri
ENSDORG00000010431	Trub1	74	61.719	ENSCSEG00000011261	trub1	77	63.445	Cynoglossus_semilaevis
ENSDORG00000010431	Trub1	71	67.480	ENSCVAG00000008791	trub1	73	67.364	Cyprinodon_variegatus
ENSDORG00000010431	Trub1	75	66.023	ENSDARG00000053805	trub1	87	66.270	Danio_rerio
ENSDORG00000010431	Trub1	96	83.284	ENSDNOG00000001069	TRUB1	99	82.899	Dasypus_novemcinctus
ENSDORG00000010431	Trub1	65	88.028	ENSETEG00000009183	TRUB1	81	72.549	Echinops_telfairi
ENSDORG00000010431	Trub1	87	93.333	ENSEASG00005014739	TRUB1	100	88.286	Equus_asinus_asinus
ENSDORG00000010431	Trub1	87	93.333	ENSECAG00000007177	TRUB1	100	88.286	Equus_caballus
ENSDORG00000010431	Trub1	99	73.109	ENSEEUG00000013993	TRUB1	99	73.950	Erinaceus_europaeus
ENSDORG00000010431	Trub1	71	68.571	ENSELUG00000000502	trub1	83	69.328	Esox_lucius
ENSDORG00000010431	Trub1	87	94.000	ENSFCAG00000031927	TRUB1	99	88.506	Felis_catus
ENSDORG00000010431	Trub1	66	77.974	ENSFALG00000002232	TRUB1	88	77.974	Ficedula_albicollis
ENSDORG00000010431	Trub1	68	86.250	ENSFDAG00000008140	TRUB1	98	86.667	Fukomys_damarensis
ENSDORG00000010431	Trub1	71	65.854	ENSFHEG00000004016	trub1	82	66.109	Fundulus_heteroclitus
ENSDORG00000010431	Trub1	79	73.897	ENSGALG00000009091	TRUB1	95	73.913	Gallus_gallus
ENSDORG00000010431	Trub1	69	64.435	ENSGAFG00000009193	trub1	81	64.655	Gambusia_affinis
ENSDORG00000010431	Trub1	58	66.332	ENSGACG00000015387	trub1	98	66.332	Gasterosteus_aculeatus
ENSDORG00000010431	Trub1	84	75.258	ENSGAGG00000009758	TRUB1	81	76.408	Gopherus_agassizii
ENSDORG00000010431	Trub1	99	88.252	ENSGGOG00000004583	TRUB1	99	89.112	Gorilla_gorilla
ENSDORG00000010431	Trub1	73	65.873	ENSHBUG00000016787	trub1	88	66.939	Haplochromis_burtoni
ENSDORG00000010431	Trub1	100	83.714	ENSHGLG00000015314	TRUB1	100	84.571	Heterocephalus_glaber_female
ENSDORG00000010431	Trub1	56	94.359	ENSHGLG00100009183	TRUB1	100	85.477	Heterocephalus_glaber_male
ENSDORG00000010431	Trub1	71	66.939	ENSHCOG00000017877	trub1	86	67.227	Hippocampus_comes
ENSDORG00000010431	Trub1	77	65.789	ENSIPUG00000017559	trub1	92	65.769	Ictalurus_punctatus
ENSDORG00000010431	Trub1	87	92.384	ENSSTOG00000003641	TRUB1	100	85.260	Ictidomys_tridecemlineatus
ENSDORG00000010431	Trub1	100	83.237	ENSJJAG00000011800	Trub1	100	84.150	Jaculus_jaculus
ENSDORG00000010431	Trub1	73	64.591	ENSKMAG00000006232	trub1	90	65.200	Kryptolebias_marmoratus
ENSDORG00000010431	Trub1	71	67.073	ENSLBEG00000026722	trub1	84	67.782	Labrus_bergylta
ENSDORG00000010431	Trub1	80	72.826	ENSLACG00000014885	TRUB1	87	74.231	Latimeria_chalumnae
ENSDORG00000010431	Trub1	79	70.330	ENSLOCG00000012979	trub1	86	71.654	Lepisosteus_oculatus
ENSDORG00000010431	Trub1	99	76.771	ENSLAFG00000015452	TRUB1	99	77.620	Loxodonta_africana
ENSDORG00000010431	Trub1	99	88.252	ENSMFAG00000031767	TRUB1	99	89.398	Macaca_fascicularis
ENSDORG00000010431	Trub1	99	88.539	ENSMMUG00000001902	TRUB1	99	89.685	Macaca_mulatta
ENSDORG00000010431	Trub1	99	84.241	ENSMNEG00000044646	TRUB1	99	85.387	Macaca_nemestrina
ENSDORG00000010431	Trub1	99	88.539	ENSMLEG00000042655	TRUB1	99	89.398	Mandrillus_leucophaeus
ENSDORG00000010431	Trub1	73	65.873	ENSMZEG00005024095	trub1	88	66.939	Maylandia_zebra
ENSDORG00000010431	Trub1	79	73.162	ENSMGAG00000011135	TRUB1	91	73.106	Meleagris_gallopavo
ENSDORG00000010431	Trub1	86	85.619	ENSMAUG00000011101	Trub1	96	82.769	Mesocricetus_auratus
ENSDORG00000010431	Trub1	98	89.535	ENSMICG00000016324	TRUB1	99	90.116	Microcebus_murinus
ENSDORG00000010431	Trub1	87	87.086	ENSMOCG00000017759	Trub1	95	82.569	Microtus_ochrogaster
ENSDORG00000010431	Trub1	82	82.394	ENSMODG00000009676	TRUB1	76	82.014	Monodelphis_domestica
ENSDORG00000010431	Trub1	94	84.356	MGP_CAROLIEiJ_G0023100	Trub1	96	84.356	Mus_caroli
ENSDORG00000010431	Trub1	94	83.436	ENSMUSG00000025086	Trub1	96	83.436	Mus_musculus
ENSDORG00000010431	Trub1	87	87.417	MGP_PahariEiJ_G0014588	Trub1	100	80.403	Mus_pahari
ENSDORG00000010431	Trub1	94	83.742	MGP_SPRETEiJ_G0024021	Trub1	96	83.742	Mus_spretus
ENSDORG00000010431	Trub1	87	95.681	ENSMPUG00000003556	TRUB1	99	89.398	Mustela_putorius_furo
ENSDORG00000010431	Trub1	87	91.694	ENSMLUG00000017686	TRUB1	99	84.971	Myotis_lucifugus
ENSDORG00000010431	Trub1	87	91.060	ENSNGAG00000018682	Trub1	97	86.053	Nannospalax_galili
ENSDORG00000010431	Trub1	71	67.073	ENSNBRG00000023393	trub1	85	68.201	Neolamprologus_brichardi
ENSDORG00000010431	Trub1	96	88.690	ENSNLEG00000016345	TRUB1	99	89.112	Nomascus_leucogenys
ENSDORG00000010431	Trub1	58	90.050	ENSMEUG00000006603	TRUB1	72	89.744	Notamacropus_eugenii
ENSDORG00000010431	Trub1	87	85.762	ENSOPRG00000009371	TRUB1	97	81.791	Ochotona_princeps
ENSDORG00000010431	Trub1	98	83.673	ENSODEG00000010854	TRUB1	98	83.673	Octodon_degus
ENSDORG00000010431	Trub1	71	66.667	ENSONIG00000007249	trub1	87	67.782	Oreochromis_niloticus
ENSDORG00000010431	Trub1	79	79.562	ENSOANG00000001556	TRUB1	87	79.545	Ornithorhynchus_anatinus
ENSDORG00000010431	Trub1	87	88.079	ENSOCUG00000009456	TRUB1	97	83.881	Oryctolagus_cuniculus
ENSDORG00000010431	Trub1	70	68.465	ENSORLG00000029719	trub1	84	68.511	Oryzias_latipes
ENSDORG00000010431	Trub1	70	68.050	ENSORLG00020016767	trub1	83	68.085	Oryzias_latipes_hni
ENSDORG00000010431	Trub1	70	68.050	ENSORLG00015014728	trub1	84	68.511	Oryzias_latipes_hsok
ENSDORG00000010431	Trub1	75	64.751	ENSOMEG00000014556	trub1	83	67.797	Oryzias_melastigma
ENSDORG00000010431	Trub1	100	90.286	ENSOGAG00000015895	TRUB1	100	90.857	Otolemur_garnettii
ENSDORG00000010431	Trub1	86	91.419	ENSOARG00000015591	TRUB1	100	85.836	Ovis_aries
ENSDORG00000010431	Trub1	99	88.539	ENSPPAG00000043645	TRUB1	99	89.398	Pan_paniscus
ENSDORG00000010431	Trub1	87	93.333	ENSPPRG00000007096	TRUB1	99	87.931	Panthera_pardus
ENSDORG00000010431	Trub1	87	93.667	ENSPTIG00000006378	TRUB1	99	88.218	Panthera_tigris_altaica
ENSDORG00000010431	Trub1	99	88.539	ENSPTRG00000002964	TRUB1	99	89.398	Pan_troglodytes
ENSDORG00000010431	Trub1	99	88.825	ENSPANG00000020712	TRUB1	99	89.971	Papio_anubis
ENSDORG00000010431	Trub1	79	75.735	ENSPSIG00000012877	TRUB1	91	75.379	Pelodiscus_sinensis
ENSDORG00000010431	Trub1	71	65.306	ENSPMGG00000000075	trub1	86	66.387	Periophthalmus_magnuspinnatus
ENSDORG00000010431	Trub1	87	85.714	ENSPEMG00000011156	Trub1	98	78.994	Peromyscus_maniculatus_bairdii
ENSDORG00000010431	Trub1	82	81.690	ENSPCIG00000009729	TRUB1	75	81.295	Phascolarctos_cinereus
ENSDORG00000010431	Trub1	71	65.306	ENSPFOG00000009950	trub1	87	65.546	Poecilia_formosa
ENSDORG00000010431	Trub1	78	61.852	ENSPLAG00000013855	trub1	84	65.546	Poecilia_latipinna
ENSDORG00000010431	Trub1	71	65.306	ENSPMEG00000009064	trub1	86	65.546	Poecilia_mexicana
ENSDORG00000010431	Trub1	71	66.122	ENSPREG00000003343	trub1	86	66.387	Poecilia_reticulata
ENSDORG00000010431	Trub1	96	89.583	ENSPPYG00000002676	TRUB1	99	89.685	Pongo_abelii
ENSDORG00000010431	Trub1	99	72.443	ENSPCAG00000008427	TRUB1	99	72.159	Procavia_capensis
ENSDORG00000010431	Trub1	98	84.593	ENSPCOG00000024360	TRUB1	98	85.174	Propithecus_coquereli
ENSDORG00000010431	Trub1	75	85.606	ENSPVAG00000007575	TRUB1	100	87.879	Pteropus_vampyrus
ENSDORG00000010431	Trub1	73	65.873	ENSPNYG00000018614	trub1	88	66.939	Pundamilia_nyererei
ENSDORG00000010431	Trub1	79	57.509	ENSPNAG00000006881	trub1	83	58.431	Pygocentrus_nattereri
ENSDORG00000010431	Trub1	87	87.086	ENSRNOG00000017321	Trub1	100	81.214	Rattus_norvegicus
ENSDORG00000010431	Trub1	99	78.797	ENSRBIG00000033423	TRUB1	99	79.656	Rhinopithecus_bieti
ENSDORG00000010431	Trub1	99	88.539	ENSRROG00000033902	TRUB1	99	89.398	Rhinopithecus_roxellana
ENSDORG00000010431	Trub1	96	89.881	ENSSBOG00000024237	TRUB1	99	89.429	Saimiri_boliviensis_boliviensis
ENSDORG00000010431	Trub1	73	80.315	ENSSHAG00000009346	TRUB1	85	80.315	Sarcophilus_harrisii
ENSDORG00000010431	Trub1	70	69.136	ENSSFOG00015022124	trub1	81	69.492	Scleropages_formosus
ENSDORG00000010431	Trub1	71	67.073	ENSSMAG00000001020	trub1	85	67.782	Scophthalmus_maximus
ENSDORG00000010431	Trub1	69	67.917	ENSSDUG00000016414	trub1	86	68.201	Seriola_dumerili
ENSDORG00000010431	Trub1	69	68.333	ENSSLDG00000015486	trub1	86	68.619	Seriola_lalandi_dorsalis
ENSDORG00000010431	Trub1	85	74.237	ENSSPUG00000001642	TRUB1	94	74.648	Sphenodon_punctatus
ENSDORG00000010431	Trub1	76	65.399	ENSSPAG00000001217	trub1	90	66.403	Stegastes_partitus
ENSDORG00000010431	Trub1	100	83.429	ENSSSCG00000010653	TRUB1	100	84.286	Sus_scrofa
ENSDORG00000010431	Trub1	78	75.926	ENSTGUG00000010971	TRUB1	94	75.758	Taeniopygia_guttata
ENSDORG00000010431	Trub1	73	76.680	ENSTBEG00000002880	TRUB1	99	76.680	Tupaia_belangeri
ENSDORG00000010431	Trub1	62	96.296	ENSTTRG00000005767	TRUB1	100	88.931	Tursiops_truncatus
ENSDORG00000010431	Trub1	87	95.681	ENSUAMG00000024876	TRUB1	99	89.971	Ursus_americanus
ENSDORG00000010431	Trub1	85	95.254	ENSUMAG00000002411	TRUB1	99	87.826	Ursus_maritimus
ENSDORG00000010431	Trub1	100	87.714	ENSVPAG00000005507	TRUB1	100	88.000	Vicugna_pacos
ENSDORG00000010431	Trub1	99	88.728	ENSVVUG00000010085	TRUB1	83	89.595	Vulpes_vulpes
ENSDORG00000010431	Trub1	79	66.176	ENSXETG00000023828	trub1	95	66.288	Xenopus_tropicalis
ENSDORG00000010431	Trub1	69	65.126	ENSXCOG00000017847	trub1	82	65.368	Xiphophorus_couchianus
ENSDORG00000010431	Trub1	71	64.490	ENSXMAG00000014701	trub1	86	64.706	Xiphophorus_maculatus