EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000013045 (Gene tree)
Gene ID: 105980210
Gene Symbol: Ythdc1
Alias: A730098D12Rik
Full Name: YTH domain containing 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 37835 bases
Position: chrKN672354.1:36306766-36344600
Accession: 105980210
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000016379	YTH	PF04146.15	8.2e-40	1	1
ENSDORP00000019291	YTH	PF04146.15	8.5e-40	1	1
ENSDORP00000012263	YTH	PF04146.15	8.8e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000024418	-	3037	XM_013008939	ENSDORP00000019291	718 (aa)	XP_012864393	UPI000BAD139D
ENSDORT00000030352	-	2103	-	ENSDORP00000016379	700 (aa)	-	UPI000BAD0C5C
ENSDORT00000013046	-	2196	-	ENSDORP00000012263	731 (aa)	-	UPI000BAD1917

Gene Model

Click here to download ENSDORG00000013045's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000013045's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000013045	Ythdc1	100	98.331	ENSG00000083896	YTHDC1	99	98.349	Homo_sapiens
ENSDORG00000013045	Ythdc1	58	59.759	ENSAPOG00000013997	ythdc1	57	62.768	Acanthochromis_polyacanthus
ENSDORG00000013045	Ythdc1	100	97.083	ENSAMEG00000005688	YTHDC1	99	97.083	Ailuropoda_melanoleuca
ENSDORG00000013045	Ythdc1	70	57.794	ENSACIG00000019728	ythdc1	78	60.048	Amphilophus_citrinellus
ENSDORG00000013045	Ythdc1	58	61.468	ENSAOCG00000000239	ythdc1	59	67.703	Amphiprion_ocellaris
ENSDORG00000013045	Ythdc1	50	65.840	ENSAPEG00000000618	ythdc1	53	68.946	Amphiprion_percula
ENSDORG00000013045	Ythdc1	92	84.812	ENSAPLG00000009921	YTHDC1	92	86.015	Anas_platyrhynchos
ENSDORG00000013045	Ythdc1	92	83.459	ENSACAG00000009697	YTHDC1	91	83.609	Anolis_carolinensis
ENSDORG00000013045	Ythdc1	100	98.192	ENSANAG00000001522	YTHDC1	99	98.212	Aotus_nancymaae
ENSDORG00000013045	Ythdc1	58	59.633	ENSACLG00000019371	ythdc1	59	66.362	Astatotilapia_calliptera
ENSDORG00000013045	Ythdc1	92	65.067	ENSAMXG00000006978	ythdc1	91	65.689	Astyanax_mexicanus
ENSDORG00000013045	Ythdc1	100	96.936	ENSBTAG00000015572	YTHDC1	99	96.936	Bos_taurus
ENSDORG00000013045	Ythdc1	100	98.609	ENSCJAG00000009934	YTHDC1	99	98.609	Callithrix_jacchus
ENSDORG00000013045	Ythdc1	100	96.944	ENSCAFG00000002821	YTHDC1	99	96.944	Canis_familiaris
ENSDORG00000013045	Ythdc1	100	96.944	ENSCAFG00020027112	YTHDC1	99	96.944	Canis_lupus_dingo
ENSDORG00000013045	Ythdc1	92	90.979	ENSCHIG00000004810	YTHDC1	95	90.857	Capra_hircus
ENSDORG00000013045	Ythdc1	100	98.470	ENSTSYG00000011668	YTHDC1	99	98.470	Carlito_syrichta
ENSDORG00000013045	Ythdc1	91	67.812	ENSCAPG00000008722	YTHDC1	90	66.306	Cavia_aperea
ENSDORG00000013045	Ythdc1	100	90.542	ENSCPOG00000010929	YTHDC1	99	90.542	Cavia_porcellus
ENSDORG00000013045	Ythdc1	100	98.331	ENSCCAG00000035754	YTHDC1	99	98.331	Cebus_capucinus
ENSDORG00000013045	Ythdc1	100	98.573	ENSCATG00000036320	YTHDC1	99	98.624	Cercocebus_atys
ENSDORG00000013045	Ythdc1	100	97.147	ENSCLAG00000005482	YTHDC1	100	96.849	Chinchilla_lanigera
ENSDORG00000013045	Ythdc1	100	98.609	ENSCSAG00000005252	YTHDC1	99	98.609	Chlorocebus_sabaeus
ENSDORG00000013045	Ythdc1	92	86.767	ENSCPBG00000021965	YTHDC1	94	86.903	Chrysemys_picta_bellii
ENSDORG00000013045	Ythdc1	100	98.609	ENSCANG00000004769	YTHDC1	99	98.624	Colobus_angolensis_palliatus
ENSDORG00000013045	Ythdc1	100	96.862	ENSCGRG00001000816	Ythdc1	99	96.974	Cricetulus_griseus_chok1gshd
ENSDORG00000013045	Ythdc1	100	96.940	ENSCGRG00000009807	Ythdc1	99	96.940	Cricetulus_griseus_crigri
ENSDORG00000013045	Ythdc1	58	60.352	ENSCSEG00000020404	ythdc1	59	66.906	Cynoglossus_semilaevis
ENSDORG00000013045	Ythdc1	58	59.424	ENSCVAG00000022349	ythdc1	59	65.783	Cyprinodon_variegatus
ENSDORG00000013045	Ythdc1	92	63.733	ENSDARG00000051953	ythdc1	58	78.378	Danio_rerio
ENSDORG00000013045	Ythdc1	100	96.250	ENSDNOG00000004949	YTHDC1	99	96.250	Dasypus_novemcinctus
ENSDORG00000013045	Ythdc1	78	100.000	ENSETEG00000001878	YTHDC1	77	100.000	Echinops_telfairi
ENSDORG00000013045	Ythdc1	100	97.639	ENSEASG00005018383	YTHDC1	100	97.644	Equus_asinus_asinus
ENSDORG00000013045	Ythdc1	100	97.083	ENSECAG00000018303	YTHDC1	100	97.054	Equus_caballus
ENSDORG00000013045	Ythdc1	100	96.100	ENSEEUG00000015466	YTHDC1	99	96.100	Erinaceus_europaeus
ENSDORG00000013045	Ythdc1	92	62.408	ENSELUG00000014029	ythdc1	91	62.200	Esox_lucius
ENSDORG00000013045	Ythdc1	100	96.940	ENSFCAG00000026791	YTHDC1	99	96.940	Felis_catus
ENSDORG00000013045	Ythdc1	68	89.679	ENSFALG00000006581	YTHDC1	85	93.917	Ficedula_albicollis
ENSDORG00000013045	Ythdc1	100	97.357	ENSFDAG00000018560	YTHDC1	100	97.357	Fukomys_damarensis
ENSDORG00000013045	Ythdc1	65	66.038	ENSFHEG00000001286	ythdc1	60	56.325	Fundulus_heteroclitus
ENSDORG00000013045	Ythdc1	64	63.830	ENSGMOG00000018815	ythdc1	78	63.830	Gadus_morhua
ENSDORG00000013045	Ythdc1	92	86.767	ENSGALG00000035906	YTHDC1	85	86.244	Gallus_gallus
ENSDORG00000013045	Ythdc1	58	62.383	ENSGACG00000015486	ythdc1	57	62.774	Gasterosteus_aculeatus
ENSDORG00000013045	Ythdc1	92	86.815	ENSGAGG00000007108	YTHDC1	92	86.519	Gopherus_agassizii
ENSDORG00000013045	Ythdc1	100	98.431	ENSGGOG00000021958	YTHDC1	99	98.489	Gorilla_gorilla
ENSDORG00000013045	Ythdc1	58	59.633	ENSHBUG00000019288	ythdc1	59	66.362	Haplochromis_burtoni
ENSDORG00000013045	Ythdc1	100	97.290	ENSHGLG00000006319	-	99	97.387	Heterocephalus_glaber_female
ENSDORG00000013045	Ythdc1	95	71.366	ENSHGLG00000003239	-	57	78.947	Heterocephalus_glaber_female
ENSDORG00000013045	Ythdc1	95	69.883	ENSHGLG00100008060	-	57	76.485	Heterocephalus_glaber_male
ENSDORG00000013045	Ythdc1	100	96.404	ENSHGLG00100001556	-	99	96.561	Heterocephalus_glaber_male
ENSDORG00000013045	Ythdc1	53	67.568	ENSHCOG00000001520	ythdc1	82	67.568	Hippocampus_comes
ENSDORG00000013045	Ythdc1	92	67.109	ENSIPUG00000018136	ythdc1	61	83.759	Ictalurus_punctatus
ENSDORG00000013045	Ythdc1	99	98.624	ENSSTOG00000013652	YTHDC1	99	98.624	Ictidomys_tridecemlineatus
ENSDORG00000013045	Ythdc1	92	92.262	ENSJJAG00000010268	Ythdc1	92	92.411	Jaculus_jaculus
ENSDORG00000013045	Ythdc1	58	60.502	ENSKMAG00000006483	ythdc1	85	65.533	Kryptolebias_marmoratus
ENSDORG00000013045	Ythdc1	62	63.235	ENSLBEG00000020831	ythdc1	71	76.471	Labrus_bergylta
ENSDORG00000013045	Ythdc1	88	73.824	ENSLACG00000004893	YTHDC1	92	74.219	Latimeria_chalumnae
ENSDORG00000013045	Ythdc1	92	72.714	ENSLOCG00000003045	ythdc1	90	88.702	Lepisosteus_oculatus
ENSDORG00000013045	Ythdc1	92	94.345	ENSLAFG00000021592	YTHDC1	91	93.006	Loxodonta_africana
ENSDORG00000013045	Ythdc1	100	98.573	ENSMFAG00000031927	YTHDC1	99	98.624	Macaca_fascicularis
ENSDORG00000013045	Ythdc1	100	98.609	ENSMMUG00000002265	YTHDC1	99	98.626	Macaca_mulatta
ENSDORG00000013045	Ythdc1	100	98.609	ENSMNEG00000033751	YTHDC1	99	98.624	Macaca_nemestrina
ENSDORG00000013045	Ythdc1	100	98.609	ENSMLEG00000042147	YTHDC1	99	98.624	Mandrillus_leucophaeus
ENSDORG00000013045	Ythdc1	56	61.871	ENSMAMG00000013122	ythdc1	58	66.826	Mastacembelus_armatus
ENSDORG00000013045	Ythdc1	58	59.633	ENSMZEG00005023173	ythdc1	59	66.362	Maylandia_zebra
ENSDORG00000013045	Ythdc1	92	84.211	ENSMGAG00000010391	YTHDC1	91	84.993	Meleagris_gallopavo
ENSDORG00000013045	Ythdc1	100	96.434	ENSMAUG00000001286	Ythdc1	99	96.561	Mesocricetus_auratus
ENSDORG00000013045	Ythdc1	100	97.914	ENSMICG00000034640	YTHDC1	99	97.937	Microcebus_murinus
ENSDORG00000013045	Ythdc1	100	96.576	ENSMOCG00000020201	Ythdc1	100	96.170	Microtus_ochrogaster
ENSDORG00000013045	Ythdc1	96	50.651	ENSMODG00000010076	-	60	61.538	Monodelphis_domestica
ENSDORG00000013045	Ythdc1	92	88.705	ENSMODG00000020754	-	91	88.102	Monodelphis_domestica
ENSDORG00000013045	Ythdc1	65	57.872	ENSMODG00000009173	-	88	61.594	Monodelphis_domestica
ENSDORG00000013045	Ythdc1	86	69.476	ENSMODG00000014337	-	94	69.830	Monodelphis_domestica
ENSDORG00000013045	Ythdc1	51	67.385	ENSMALG00000013412	ythdc1	56	69.054	Monopterus_albus
ENSDORG00000013045	Ythdc1	100	96.940	MGP_CAROLIEiJ_G0027347	Ythdc1	99	96.974	Mus_caroli
ENSDORG00000013045	Ythdc1	100	96.801	ENSMUSG00000035851	Ythdc1	99	96.836	Mus_musculus
ENSDORG00000013045	Ythdc1	99	96.836	MGP_PahariEiJ_G0017126	Ythdc1	99	96.836	Mus_pahari
ENSDORG00000013045	Ythdc1	100	97.079	MGP_SPRETEiJ_G0028339	Ythdc1	99	97.111	Mus_spretus
ENSDORG00000013045	Ythdc1	92	73.163	ENSMPUG00000001743	YTHDC1	53	98.695	Mustela_putorius_furo
ENSDORG00000013045	Ythdc1	100	96.797	ENSMLUG00000016300	YTHDC1	100	96.797	Myotis_lucifugus
ENSDORG00000013045	Ythdc1	60	91.924	ENSNGAG00000024000	Ythdc1	93	90.521	Nannospalax_galili
ENSDORG00000013045	Ythdc1	60	63.889	ENSNBRG00000007663	ythdc1	70	66.589	Neolamprologus_brichardi
ENSDORG00000013045	Ythdc1	99	97.658	ENSNLEG00000009202	YTHDC1	99	97.658	Nomascus_leucogenys
ENSDORG00000013045	Ythdc1	83	81.940	ENSMEUG00000007128	YTHDC1	81	81.940	Notamacropus_eugenii
ENSDORG00000013045	Ythdc1	76	98.867	ENSOPRG00000008986	YTHDC1	74	98.867	Ochotona_princeps
ENSDORG00000013045	Ythdc1	100	96.936	ENSODEG00000001715	YTHDC1	99	96.936	Octodon_degus
ENSDORG00000013045	Ythdc1	66	76.471	ENSONIG00000012651	ythdc1	64	69.412	Oreochromis_niloticus
ENSDORG00000013045	Ythdc1	88	77.674	ENSOANG00000014398	YTHDC1	55	97.468	Ornithorhynchus_anatinus
ENSDORG00000013045	Ythdc1	93	81.287	ENSOCUG00000015886	YTHDC1	57	95.729	Oryctolagus_cuniculus
ENSDORG00000013045	Ythdc1	56	61.111	ENSORLG00000030544	ythdc1	60	66.988	Oryzias_latipes
ENSDORG00000013045	Ythdc1	92	52.537	ENSORLG00020019316	ythdc1	60	66.988	Oryzias_latipes_hni
ENSDORG00000013045	Ythdc1	58	60.230	ENSOMEG00000000551	ythdc1	60	65.526	Oryzias_melastigma
ENSDORG00000013045	Ythdc1	100	97.079	ENSOGAG00000003362	YTHDC1	99	97.079	Otolemur_garnettii
ENSDORG00000013045	Ythdc1	100	96.936	ENSOARG00000008633	YTHDC1	99	96.936	Ovis_aries
ENSDORG00000013045	Ythdc1	100	98.288	ENSPPAG00000041315	YTHDC1	99	98.352	Pan_paniscus
ENSDORG00000013045	Ythdc1	100	97.004	ENSPPRG00000011979	YTHDC1	99	97.111	Panthera_pardus
ENSDORG00000013045	Ythdc1	100	96.719	ENSPTIG00000015527	YTHDC1	100	96.836	Panthera_tigris_altaica
ENSDORG00000013045	Ythdc1	100	98.288	ENSPTRG00000016105	YTHDC1	99	98.352	Pan_troglodytes
ENSDORG00000013045	Ythdc1	100	98.573	ENSPANG00000021590	YTHDC1	99	98.624	Papio_anubis
ENSDORG00000013045	Ythdc1	92	70.250	ENSPKIG00000018497	ythdc1	91	69.072	Paramormyrops_kingsleyae
ENSDORG00000013045	Ythdc1	92	86.466	ENSPSIG00000002782	YTHDC1	92	86.165	Pelodiscus_sinensis
ENSDORG00000013045	Ythdc1	100	97.218	ENSPEMG00000013850	Ythdc1	100	97.218	Peromyscus_maniculatus_bairdii
ENSDORG00000013045	Ythdc1	92	88.102	ENSPCIG00000006870	YTHDC1	91	87.952	Phascolarctos_cinereus
ENSDORG00000013045	Ythdc1	58	59.545	ENSPFOG00000013404	ythdc1	60	65.625	Poecilia_formosa
ENSDORG00000013045	Ythdc1	58	59.545	ENSPLAG00000011079	ythdc1	85	65.625	Poecilia_latipinna
ENSDORG00000013045	Ythdc1	58	59.545	ENSPMEG00000009238	ythdc1	60	65.625	Poecilia_mexicana
ENSDORG00000013045	Ythdc1	65	67.925	ENSPREG00000016973	ythdc1	59	60.050	Poecilia_reticulata
ENSDORG00000013045	Ythdc1	88	98.420	ENSPPYG00000014726	YTHDC1	100	98.420	Pongo_abelii
ENSDORG00000013045	Ythdc1	77	89.545	ENSPCAG00000009607	YTHDC1	75	89.091	Procavia_capensis
ENSDORG00000013045	Ythdc1	100	93.153	ENSPCOG00000019105	YTHDC1	99	93.398	Propithecus_coquereli
ENSDORG00000013045	Ythdc1	99	93.827	ENSPVAG00000015551	YTHDC1	99	93.827	Pteropus_vampyrus
ENSDORG00000013045	Ythdc1	58	59.633	ENSPNYG00000011687	ythdc1	59	66.362	Pundamilia_nyererei
ENSDORG00000013045	Ythdc1	92	68.613	ENSPNAG00000028365	ythdc1	91	69.208	Pygocentrus_nattereri
ENSDORG00000013045	Ythdc1	99	96.159	ENSRNOG00000001996	Ythdc1	99	96.159	Rattus_norvegicus
ENSDORG00000013045	Ythdc1	99	97.662	ENSRBIG00000028279	YTHDC1	99	97.662	Rhinopithecus_bieti
ENSDORG00000013045	Ythdc1	100	98.609	ENSRROG00000035028	YTHDC1	99	98.624	Rhinopithecus_roxellana
ENSDORG00000013045	Ythdc1	100	98.573	ENSSBOG00000022353	YTHDC1	99	98.624	Saimiri_boliviensis_boliviensis
ENSDORG00000013045	Ythdc1	92	88.554	ENSSHAG00000002538	YTHDC1	91	88.253	Sarcophilus_harrisii
ENSDORG00000013045	Ythdc1	92	68.960	ENSSFOG00015003298	ythdc1	60	86.019	Scleropages_formosus
ENSDORG00000013045	Ythdc1	57	60.314	ENSSMAG00000009086	ythdc1	60	65.947	Scophthalmus_maximus
ENSDORG00000013045	Ythdc1	56	61.017	ENSSDUG00000022008	ythdc1	59	67.277	Seriola_dumerili
ENSDORG00000013045	Ythdc1	56	61.017	ENSSLDG00000007926	ythdc1	59	67.277	Seriola_lalandi_dorsalis
ENSDORG00000013045	Ythdc1	80	98.094	ENSSARG00000010960	YTHDC1	100	98.094	Sorex_araneus
ENSDORG00000013045	Ythdc1	92	82.934	ENSSPUG00000009357	YTHDC1	91	84.639	Sphenodon_punctatus
ENSDORG00000013045	Ythdc1	58	62.385	ENSSPAG00000011449	ythdc1	59	67.703	Stegastes_partitus
ENSDORG00000013045	Ythdc1	100	96.399	ENSSSCG00000035505	YTHDC1	100	96.372	Sus_scrofa
ENSDORG00000013045	Ythdc1	92	86.917	ENSTGUG00000004452	-	91	86.617	Taeniopygia_guttata
ENSDORG00000013045	Ythdc1	63	71.795	ENSTRUG00000010142	ythdc1	69	73.684	Takifugu_rubripes
ENSDORG00000013045	Ythdc1	91	60.087	ENSTNIG00000013243	ythdc1	88	66.279	Tetraodon_nigroviridis
ENSDORG00000013045	Ythdc1	92	86.536	ENSTBEG00000011546	YTHDC1	91	87.595	Tupaia_belangeri
ENSDORG00000013045	Ythdc1	100	96.111	ENSTTRG00000005083	YTHDC1	99	96.111	Tursiops_truncatus
ENSDORG00000013045	Ythdc1	94	97.198	ENSUAMG00000010388	YTHDC1	100	97.198	Ursus_americanus
ENSDORG00000013045	Ythdc1	100	83.426	ENSUMAG00000013668	YTHDC1	98	83.426	Ursus_maritimus
ENSDORG00000013045	Ythdc1	100	97.286	ENSVPAG00000009040	YTHDC1	99	97.286	Vicugna_pacos
ENSDORG00000013045	Ythdc1	99	97.115	ENSVVUG00000005387	YTHDC1	100	97.054	Vulpes_vulpes
ENSDORG00000013045	Ythdc1	92	73.731	ENSXETG00000017960	ythdc1	91	72.308	Xenopus_tropicalis
ENSDORG00000013045	Ythdc1	58	59.545	ENSXMAG00000005196	ythdc1	61	65.138	Xiphophorus_maculatus