EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000013833 (Gene tree)
Gene ID: 105995968
Gene Symbol: Xrn1
Alias: Dhm2|mXrn1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 59316 bases
Position: chrKN672470.1:3024032-3083347
Accession: 105995968
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000013012	XRN_N	PF03159.18	5.8e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000013840	-	5106	XM_013029886	ENSDORP00000013012	1701 (aa)	XP_012885340	UPI000BAD0213

Gene Model

Click here to download ENSDORG00000013833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000013833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000013833	Xrn1	100	86.690	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSDORG00000013833	Xrn1	94	73.024	ENSAPOG00000000622	xrn1	98	72.779	Acanthochromis_polyacanthus
ENSDORG00000013833	Xrn1	100	87.543	ENSAMEG00000012538	XRN1	100	87.486	Ailuropoda_melanoleuca
ENSDORG00000013833	Xrn1	94	72.254	ENSACIG00000001057	xrn1	98	72.254	Amphilophus_citrinellus
ENSDORG00000013833	Xrn1	100	60.963	ENSAOCG00000014097	xrn1	95	68.273	Amphiprion_ocellaris
ENSDORG00000013833	Xrn1	100	60.821	ENSAPEG00000006620	xrn1	91	72.472	Amphiprion_percula
ENSDORG00000013833	Xrn1	94	71.201	ENSATEG00000009752	xrn1	97	71.009	Anabas_testudineus
ENSDORG00000013833	Xrn1	99	75.072	ENSAPLG00000004905	XRN1	100	74.435	Anas_platyrhynchos
ENSDORG00000013833	Xrn1	100	71.597	ENSACAG00000004985	XRN1	100	71.092	Anolis_carolinensis
ENSDORG00000013833	Xrn1	100	86.806	ENSANAG00000029013	XRN1	99	94.004	Aotus_nancymaae
ENSDORG00000013833	Xrn1	100	60.102	ENSACLG00000004806	xrn1	97	61.131	Astatotilapia_calliptera
ENSDORG00000013833	Xrn1	99	60.319	ENSAMXG00000019370	xrn1	95	89.320	Astyanax_mexicanus
ENSDORG00000013833	Xrn1	100	86.233	ENSBTAG00000011524	XRN1	100	86.233	Bos_taurus
ENSDORG00000013833	Xrn1	70	38.783	WBGene00012730	xrn-1	78	38.276	Caenorhabditis_elegans
ENSDORG00000013833	Xrn1	100	86.690	ENSCJAG00000001872	XRN1	100	86.690	Callithrix_jacchus
ENSDORG00000013833	Xrn1	100	87.637	ENSCAFG00000007783	XRN1	100	87.694	Canis_familiaris
ENSDORG00000013833	Xrn1	100	87.637	ENSCAFG00020009120	XRN1	99	92.247	Canis_lupus_dingo
ENSDORG00000013833	Xrn1	99	87.421	ENSCHIG00000019192	XRN1	99	87.421	Capra_hircus
ENSDORG00000013833	Xrn1	100	87.500	ENSTSYG00000002705	XRN1	100	87.500	Carlito_syrichta
ENSDORG00000013833	Xrn1	55	77.114	ENSCAPG00000004604	-	99	77.114	Cavia_aperea
ENSDORG00000013833	Xrn1	100	87.153	ENSCCAG00000034800	XRN1	99	96.343	Cebus_capucinus
ENSDORG00000013833	Xrn1	100	87.211	ENSCATG00000041794	XRN1	100	87.269	Cercocebus_atys
ENSDORG00000013833	Xrn1	100	85.690	ENSCLAG00000001451	XRN1	99	95.390	Chinchilla_lanigera
ENSDORG00000013833	Xrn1	100	86.724	ENSCSAG00000011265	XRN1	100	86.782	Chlorocebus_sabaeus
ENSDORG00000013833	Xrn1	57	97.403	ENSCHOG00000013961	-	59	97.403	Choloepus_hoffmanni
ENSDORG00000013833	Xrn1	69	50.795	ENSCSAVG00000008584	-	91	50.596	Ciona_savignyi
ENSDORG00000013833	Xrn1	100	87.269	ENSCANG00000037495	XRN1	99	96.343	Colobus_angolensis_palliatus
ENSDORG00000013833	Xrn1	100	86.455	ENSCGRG00001019411	Xrn1	99	95.231	Cricetulus_griseus_chok1gshd
ENSDORG00000013833	Xrn1	100	86.455	ENSCGRG00000012464	Xrn1	99	95.231	Cricetulus_griseus_crigri
ENSDORG00000013833	Xrn1	94	67.070	ENSCSEG00000021285	xrn1	94	89.423	Cynoglossus_semilaevis
ENSDORG00000013833	Xrn1	66	67.719	ENSCVAG00000013089	xrn1	99	72.134	Cyprinodon_variegatus
ENSDORG00000013833	Xrn1	99	62.564	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSDORG00000013833	Xrn1	72	40.207	FBgn0020261	pcm	72	40.707	Drosophila_melanogaster
ENSDORG00000013833	Xrn1	86	99.099	ENSETEG00000003978	XRN1	88	97.581	Echinops_telfairi
ENSDORG00000013833	Xrn1	100	87.177	ENSEASG00005002687	XRN1	99	95.231	Equus_asinus_asinus
ENSDORG00000013833	Xrn1	100	85.862	ENSECAG00000008301	XRN1	100	85.920	Equus_caballus
ENSDORG00000013833	Xrn1	92	81.623	ENSEEUG00000011323	XRN1	92	81.623	Erinaceus_europaeus
ENSDORG00000013833	Xrn1	100	61.347	ENSELUG00000000169	xrn1	97	61.869	Esox_lucius
ENSDORG00000013833	Xrn1	100	82.649	ENSFCAG00000027589	XRN1	99	95.595	Felis_catus
ENSDORG00000013833	Xrn1	100	73.528	ENSFALG00000007021	XRN1	100	72.574	Ficedula_albicollis
ENSDORG00000013833	Xrn1	100	86.494	ENSFDAG00000020494	XRN1	99	94.754	Fukomys_damarensis
ENSDORG00000013833	Xrn1	83	68.140	ENSGMOG00000006396	xrn1	82	67.833	Gadus_morhua
ENSDORG00000013833	Xrn1	100	74.045	ENSGALG00000002706	XRN1	100	73.596	Gallus_gallus
ENSDORG00000013833	Xrn1	100	60.183	ENSGACG00000014328	xrn1	100	60.239	Gasterosteus_aculeatus
ENSDORG00000013833	Xrn1	94	77.193	ENSGAGG00000017535	XRN1	99	76.770	Gopherus_agassizii
ENSDORG00000013833	Xrn1	100	86.921	ENSGGOG00000008047	XRN1	100	86.921	Gorilla_gorilla
ENSDORG00000013833	Xrn1	100	60.208	ENSHBUG00000005908	xrn1	98	73.101	Haplochromis_burtoni
ENSDORG00000013833	Xrn1	100	87.364	ENSHGLG00000014476	XRN1	99	95.548	Heterocephalus_glaber_female
ENSDORG00000013833	Xrn1	100	87.421	ENSHGLG00100015130	XRN1	99	95.548	Heterocephalus_glaber_male
ENSDORG00000013833	Xrn1	95	71.118	ENSHCOG00000014062	xrn1	99	70.294	Hippocampus_comes
ENSDORG00000013833	Xrn1	99	62.717	ENSIPUG00000015229	xrn1	99	62.298	Ictalurus_punctatus
ENSDORG00000013833	Xrn1	100	88.154	ENSSTOG00000013552	XRN1	99	96.184	Ictidomys_tridecemlineatus
ENSDORG00000013833	Xrn1	99	84.789	ENSJJAG00000010863	Xrn1	99	95.861	Jaculus_jaculus
ENSDORG00000013833	Xrn1	94	61.243	ENSKMAG00000021356	xrn1	94	76.421	Kryptolebias_marmoratus
ENSDORG00000013833	Xrn1	100	59.730	ENSLBEG00000018656	xrn1	97	90.291	Labrus_bergylta
ENSDORG00000013833	Xrn1	100	69.863	ENSLACG00000009020	XRN1	100	69.332	Latimeria_chalumnae
ENSDORG00000013833	Xrn1	100	65.387	ENSLOCG00000007944	xrn1	100	65.195	Lepisosteus_oculatus
ENSDORG00000013833	Xrn1	62	93.920	ENSLAFG00000015426	XRN1	100	93.920	Loxodonta_africana
ENSDORG00000013833	Xrn1	100	87.326	ENSMFAG00000032599	XRN1	100	87.384	Macaca_fascicularis
ENSDORG00000013833	Xrn1	100	87.269	ENSMMUG00000014038	XRN1	100	87.326	Macaca_mulatta
ENSDORG00000013833	Xrn1	100	86.979	ENSMNEG00000034217	XRN1	100	87.037	Macaca_nemestrina
ENSDORG00000013833	Xrn1	93	71.564	ENSMAMG00000013219	xrn1	94	76.701	Mastacembelus_armatus
ENSDORG00000013833	Xrn1	100	60.102	ENSMZEG00005015099	xrn1	97	61.095	Maylandia_zebra
ENSDORG00000013833	Xrn1	99	74.085	ENSMGAG00000006333	XRN1	99	73.547	Meleagris_gallopavo
ENSDORG00000013833	Xrn1	100	86.771	ENSMICG00000048948	XRN1	96	94.175	Microcebus_murinus
ENSDORG00000013833	Xrn1	57	94.118	ENSMOCG00000008665	Xrn1	99	94.118	Microtus_ochrogaster
ENSDORG00000013833	Xrn1	100	77.458	ENSMODG00000021236	XRN1	100	77.228	Monodelphis_domestica
ENSDORG00000013833	Xrn1	100	57.635	ENSMALG00000004098	xrn1	100	56.938	Monopterus_albus
ENSDORG00000013833	Xrn1	100	78.555	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSDORG00000013833	Xrn1	100	85.260	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSDORG00000013833	Xrn1	100	85.087	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSDORG00000013833	Xrn1	100	85.260	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSDORG00000013833	Xrn1	100	86.924	ENSMPUG00000012040	XRN1	100	86.982	Mustela_putorius_furo
ENSDORG00000013833	Xrn1	100	85.764	ENSMLUG00000016885	XRN1	100	85.764	Myotis_lucifugus
ENSDORG00000013833	Xrn1	57	90.938	ENSNGAG00000023964	Xrn1	99	90.938	Nannospalax_galili
ENSDORG00000013833	Xrn1	100	87.095	ENSNLEG00000004726	XRN1	100	87.153	Nomascus_leucogenys
ENSDORG00000013833	Xrn1	72	92.920	ENSMEUG00000014473	-	73	93.204	Notamacropus_eugenii
ENSDORG00000013833	Xrn1	73	90.511	ENSOPRG00000007337	-	73	90.511	Ochotona_princeps
ENSDORG00000013833	Xrn1	100	61.092	ENSONIG00000016673	xrn1	99	64.026	Oreochromis_niloticus
ENSDORG00000013833	Xrn1	92	75.016	ENSOANG00000006735	XRN1	100	74.312	Ornithorhynchus_anatinus
ENSDORG00000013833	Xrn1	100	86.971	ENSOCUG00000001861	XRN1	100	86.971	Oryctolagus_cuniculus
ENSDORG00000013833	Xrn1	100	60.855	ENSORLG00000013005	xrn1	100	60.739	Oryzias_latipes
ENSDORG00000013833	Xrn1	100	61.277	ENSORLG00020005559	xrn1	100	61.287	Oryzias_latipes_hni
ENSDORG00000013833	Xrn1	100	60.936	ENSORLG00015022523	xrn1	100	60.529	Oryzias_latipes_hsok
ENSDORG00000013833	Xrn1	92	72.602	ENSOMEG00000015397	xrn1	99	72.602	Oryzias_melastigma
ENSDORG00000013833	Xrn1	100	83.956	ENSOGAG00000000170	XRN1	100	83.956	Otolemur_garnettii
ENSDORG00000013833	Xrn1	99	87.393	ENSOARG00000006343	XRN1	99	87.393	Ovis_aries
ENSDORG00000013833	Xrn1	100	86.856	ENSPPAG00000010180	XRN1	100	86.856	Pan_paniscus
ENSDORG00000013833	Xrn1	100	87.045	ENSPPRG00000007125	XRN1	100	87.102	Panthera_pardus
ENSDORG00000013833	Xrn1	100	87.045	ENSPTIG00000021081	XRN1	100	87.102	Panthera_tigris_altaica
ENSDORG00000013833	Xrn1	100	86.972	ENSPTRG00000015482	XRN1	100	86.972	Pan_troglodytes
ENSDORG00000013833	Xrn1	100	87.211	ENSPANG00000010638	XRN1	100	87.211	Papio_anubis
ENSDORG00000013833	Xrn1	100	74.971	ENSPSIG00000018050	XRN1	100	74.857	Pelodiscus_sinensis
ENSDORG00000013833	Xrn1	56	77.080	ENSPMGG00000002648	xrn1	99	77.708	Periophthalmus_magnuspinnatus
ENSDORG00000013833	Xrn1	57	95.072	ENSPEMG00000020610	Xrn1	99	95.072	Peromyscus_maniculatus_bairdii
ENSDORG00000013833	Xrn1	65	50.295	ENSPMAG00000002975	xrn1	91	77.810	Petromyzon_marinus
ENSDORG00000013833	Xrn1	100	79.227	ENSPCIG00000028735	XRN1	99	88.781	Phascolarctos_cinereus
ENSDORG00000013833	Xrn1	91	64.117	ENSPFOG00000013932	xrn1	99	64.368	Poecilia_formosa
ENSDORG00000013833	Xrn1	91	63.545	ENSPLAG00000021653	xrn1	99	64.043	Poecilia_latipinna
ENSDORG00000013833	Xrn1	89	64.121	ENSPMEG00000003076	xrn1	95	64.226	Poecilia_mexicana
ENSDORG00000013833	Xrn1	100	61.002	ENSPREG00000021147	xrn1	100	60.916	Poecilia_reticulata
ENSDORG00000013833	Xrn1	100	86.379	ENSPPYG00000014172	XRN1	100	86.379	Pongo_abelii
ENSDORG00000013833	Xrn1	88	81.499	ENSPCAG00000005638	XRN1	96	81.499	Procavia_capensis
ENSDORG00000013833	Xrn1	100	87.037	ENSPCOG00000013089	XRN1	99	95.707	Propithecus_coquereli
ENSDORG00000013833	Xrn1	93	89.688	ENSPVAG00000016265	XRN1	93	89.688	Pteropus_vampyrus
ENSDORG00000013833	Xrn1	100	60.573	ENSPNYG00000010570	xrn1	97	61.338	Pundamilia_nyererei
ENSDORG00000013833	Xrn1	99	60.412	ENSPNAG00000023531	xrn1	99	60.194	Pygocentrus_nattereri
ENSDORG00000013833	Xrn1	100	85.821	ENSRNOG00000042951	Xrn1	100	85.821	Rattus_norvegicus
ENSDORG00000013833	Xrn1	100	86.458	ENSRBIG00000041227	XRN1	100	86.516	Rhinopithecus_bieti
ENSDORG00000013833	Xrn1	66	54.496	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSDORG00000013833	Xrn1	100	86.632	ENSSBOG00000029561	XRN1	100	86.632	Saimiri_boliviensis_boliviensis
ENSDORG00000013833	Xrn1	99	78.094	ENSSHAG00000016207	XRN1	100	77.862	Sarcophilus_harrisii
ENSDORG00000013833	Xrn1	100	61.178	ENSSFOG00015024211	xrn1	97	62.087	Scleropages_formosus
ENSDORG00000013833	Xrn1	94	70.791	ENSSMAG00000016534	xrn1	99	70.713	Scophthalmus_maximus
ENSDORG00000013833	Xrn1	89	72.557	ENSSDUG00000010306	xrn1	97	72.484	Seriola_dumerili
ENSDORG00000013833	Xrn1	94	71.793	ENSSLDG00000021543	xrn1	100	71.724	Seriola_lalandi_dorsalis
ENSDORG00000013833	Xrn1	69	84.504	ENSSARG00000007741	-	83	84.504	Sorex_araneus
ENSDORG00000013833	Xrn1	100	74.786	ENSTGUG00000008498	XRN1	100	73.928	Taeniopygia_guttata
ENSDORG00000013833	Xrn1	100	58.367	ENSTRUG00000004895	xrn1	96	78.038	Takifugu_rubripes
ENSDORG00000013833	Xrn1	100	57.829	ENSTNIG00000017615	xrn1	100	57.586	Tetraodon_nigroviridis
ENSDORG00000013833	Xrn1	84	95.957	ENSTBEG00000003256	XRN1	84	95.957	Tupaia_belangeri
ENSDORG00000013833	Xrn1	100	82.441	ENSTTRG00000012914	XRN1	100	82.441	Tursiops_truncatus
ENSDORG00000013833	Xrn1	100	86.437	ENSUAMG00000001608	XRN1	99	92.000	Ursus_americanus
ENSDORG00000013833	Xrn1	100	88.276	ENSUMAG00000013625	XRN1	100	88.218	Ursus_maritimus
ENSDORG00000013833	Xrn1	100	83.257	ENSVPAG00000004690	XRN1	100	83.314	Vicugna_pacos
ENSDORG00000013833	Xrn1	100	87.752	ENSVVUG00000024461	XRN1	98	97.368	Vulpes_vulpes
ENSDORG00000013833	Xrn1	100	67.162	ENSXETG00000000619	xrn1	97	87.634	Xenopus_tropicalis
ENSDORG00000013833	Xrn1	100	60.377	ENSXCOG00000007917	xrn1	100	60.481	Xiphophorus_couchianus
ENSDORG00000013833	Xrn1	92	71.801	ENSXMAG00000018320	xrn1	98	71.801	Xiphophorus_maculatus