EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000014661 (Gene tree)
Gene ID: 105987086
Gene Symbol: Hfm1
Alias: A330009G12Rik|LOC381663|Mer3|Sec63d1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 74903 bases
Position: chrKN672385.1:10625480-10700382
Accession: 105987086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000013792	ResIII	PF04851.15	1.8e-10	1	1
ENSDORP00000013792	DEAD	PF00270.29	1.6e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000014661	-	4365	XM_013018241	ENSDORP00000013792	1454 (aa)	XP_012873695	UPI000BAD21A2

Gene Model

Click here to download ENSDORG00000014661's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000014661's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000014661	Hfm1	58	31.807	ENSDORG00000005861	Snrnp200	76	31.807
ENSDORG00000014661	Hfm1	51	34.918	ENSDORG00000008572	Ascc3	61	34.918

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000014661	Hfm1	100	78.709	ENSG00000162669	HFM1	100	78.709	Homo_sapiens
ENSDORG00000014661	Hfm1	58	63.189	ENSAPOG00000005304	hfm1	94	63.189	Acanthochromis_polyacanthus
ENSDORG00000014661	Hfm1	100	77.076	ENSAMEG00000000432	HFM1	100	77.076	Ailuropoda_melanoleuca
ENSDORG00000014661	Hfm1	73	56.486	ENSACIG00000021553	hfm1	94	56.486	Amphilophus_citrinellus
ENSDORG00000014661	Hfm1	56	66.296	ENSAOCG00000022839	hfm1	96	66.296	Amphiprion_ocellaris
ENSDORG00000014661	Hfm1	56	66.337	ENSAPEG00000014316	hfm1	96	66.337	Amphiprion_percula
ENSDORG00000014661	Hfm1	68	61.111	ENSATEG00000019181	hfm1	80	62.065	Anabas_testudineus
ENSDORG00000014661	Hfm1	100	58.005	ENSAPLG00000013639	HFM1	100	58.005	Anas_platyrhynchos
ENSDORG00000014661	Hfm1	100	75.926	ENSANAG00000029513	HFM1	100	75.926	Aotus_nancymaae
ENSDORG00000014661	Hfm1	65	61.263	ENSACLG00000009033	hfm1	97	62.266	Astatotilapia_calliptera
ENSDORG00000014661	Hfm1	81	55.556	ENSAMXG00000006108	hfm1	79	55.556	Astyanax_mexicanus
ENSDORG00000014661	Hfm1	100	76.200	ENSBTAG00000020856	HFM1	100	76.200	Bos_taurus
ENSDORG00000014661	Hfm1	100	77.747	ENSCJAG00000001843	HFM1	100	77.747	Callithrix_jacchus
ENSDORG00000014661	Hfm1	100	77.023	ENSCAFG00000020187	HFM1	100	77.023	Canis_familiaris
ENSDORG00000014661	Hfm1	100	77.641	ENSTSYG00000014250	HFM1	100	77.641	Carlito_syrichta
ENSDORG00000014661	Hfm1	99	74.535	ENSCPOG00000007421	HFM1	99	74.535	Cavia_porcellus
ENSDORG00000014661	Hfm1	100	77.335	ENSCCAG00000033206	HFM1	100	77.335	Cebus_capucinus
ENSDORG00000014661	Hfm1	100	77.679	ENSCATG00000030987	HFM1	100	77.679	Cercocebus_atys
ENSDORG00000014661	Hfm1	100	75.234	ENSCLAG00000005173	HFM1	99	75.234	Chinchilla_lanigera
ENSDORG00000014661	Hfm1	68	93.421	ENSCHOG00000011824	-	77	93.421	Choloepus_hoffmanni
ENSDORG00000014661	Hfm1	100	70.198	ENSCGRG00001016995	Hfm1	100	70.198	Cricetulus_griseus_chok1gshd
ENSDORG00000014661	Hfm1	100	74.089	ENSCGRG00000017181	Hfm1	100	74.089	Cricetulus_griseus_crigri
ENSDORG00000014661	Hfm1	71	57.915	ENSCSEG00000017659	hfm1	93	57.915	Cynoglossus_semilaevis
ENSDORG00000014661	Hfm1	50	67.218	ENSCVAG00000005075	hfm1	87	67.218	Cyprinodon_variegatus
ENSDORG00000014661	Hfm1	61	63.564	ENSDARG00000104288	hfm1	78	63.564	Danio_rerio
ENSDORG00000014661	Hfm1	100	72.370	ENSDNOG00000004776	HFM1	100	72.370	Dasypus_novemcinctus
ENSDORG00000014661	Hfm1	71	81.202	ENSEASG00005015424	HFM1	97	81.202	Equus_asinus_asinus
ENSDORG00000014661	Hfm1	100	75.766	ENSECAG00000024039	HFM1	100	75.766	Equus_caballus
ENSDORG00000014661	Hfm1	63	65.443	ENSELUG00000018944	hfm1	97	65.443	Esox_lucius
ENSDORG00000014661	Hfm1	100	77.709	ENSFCAG00000029116	HFM1	100	77.709	Felis_catus
ENSDORG00000014661	Hfm1	100	57.239	ENSFALG00000001781	HFM1	100	57.763	Ficedula_albicollis
ENSDORG00000014661	Hfm1	100	74.551	ENSFDAG00000020816	HFM1	100	74.551	Fukomys_damarensis
ENSDORG00000014661	Hfm1	67	58.256	ENSGMOG00000017436	hfm1	99	58.256	Gadus_morhua
ENSDORG00000014661	Hfm1	71	59.052	ENSGAFG00000018093	hfm1	93	64.118	Gambusia_affinis
ENSDORG00000014661	Hfm1	67	59.512	ENSGACG00000015686	hfm1	100	59.512	Gasterosteus_aculeatus
ENSDORG00000014661	Hfm1	100	78.503	ENSGGOG00000038524	HFM1	100	78.503	Gorilla_gorilla
ENSDORG00000014661	Hfm1	65	62.316	ENSHBUG00000007309	hfm1	95	58.412	Haplochromis_burtoni
ENSDORG00000014661	Hfm1	57	62.545	ENSHCOG00000019632	hfm1	97	62.545	Hippocampus_comes
ENSDORG00000014661	Hfm1	70	60.806	ENSIPUG00000017020	hfm1	92	63.837	Ictalurus_punctatus
ENSDORG00000014661	Hfm1	100	74.209	ENSJJAG00000017198	Hfm1	100	74.209	Jaculus_jaculus
ENSDORG00000014661	Hfm1	62	61.087	ENSKMAG00000002282	hfm1	91	61.087	Kryptolebias_marmoratus
ENSDORG00000014661	Hfm1	71	58.229	ENSLBEG00000006759	hfm1	96	63.115	Labrus_bergylta
ENSDORG00000014661	Hfm1	68	67.195	ENSLACG00000010698	HFM1	99	64.564	Latimeria_chalumnae
ENSDORG00000014661	Hfm1	75	60.507	ENSLOCG00000004931	hfm1	99	60.507	Lepisosteus_oculatus
ENSDORG00000014661	Hfm1	52	84.211	ENSLAFG00000015903	-	99	84.211	Loxodonta_africana
ENSDORG00000014661	Hfm1	100	75.222	ENSMFAG00000003649	HFM1	100	75.222	Macaca_fascicularis
ENSDORG00000014661	Hfm1	100	77.541	ENSMMUG00000006819	HFM1	100	77.541	Macaca_mulatta
ENSDORG00000014661	Hfm1	55	67.714	ENSMAMG00000004623	hfm1	97	64.024	Mastacembelus_armatus
ENSDORG00000014661	Hfm1	65	61.368	ENSMZEG00005004679	hfm1	97	62.383	Maylandia_zebra
ENSDORG00000014661	Hfm1	55	76.101	ENSMGAG00000008437	HFM1	99	76.101	Meleagris_gallopavo
ENSDORG00000014661	Hfm1	100	74.176	ENSMAUG00000018858	Hfm1	100	74.176	Mesocricetus_auratus
ENSDORG00000014661	Hfm1	100	77.557	ENSMICG00000037935	HFM1	100	77.557	Microcebus_murinus
ENSDORG00000014661	Hfm1	100	72.490	ENSMOCG00000014812	Hfm1	100	72.490	Microtus_ochrogaster
ENSDORG00000014661	Hfm1	63	61.555	ENSMMOG00000006148	hfm1	95	62.073	Mola_mola
ENSDORG00000014661	Hfm1	65	61.990	ENSMALG00000002401	hfm1	94	64.623	Monopterus_albus
ENSDORG00000014661	Hfm1	95	71.175	MGP_CAROLIEiJ_G0027496	Hfm1	100	71.175	Mus_caroli
ENSDORG00000014661	Hfm1	100	73.521	ENSMUSG00000043410	Hfm1	100	73.521	Mus_musculus
ENSDORG00000014661	Hfm1	100	73.177	MGP_PahariEiJ_G0017268	Hfm1	100	73.246	Mus_pahari
ENSDORG00000014661	Hfm1	100	73.315	MGP_SPRETEiJ_G0028495	Hfm1	100	73.315	Mus_spretus
ENSDORG00000014661	Hfm1	100	73.919	ENSMPUG00000004594	HFM1	100	73.919	Mustela_putorius_furo
ENSDORG00000014661	Hfm1	100	75.683	ENSMLUG00000010200	HFM1	100	75.683	Myotis_lucifugus
ENSDORG00000014661	Hfm1	65	58.421	ENSNBRG00000002910	hfm1	97	62.945	Neolamprologus_brichardi
ENSDORG00000014661	Hfm1	100	74.573	ENSNLEG00000010285	HFM1	100	74.573	Nomascus_leucogenys
ENSDORG00000014661	Hfm1	84	64.655	ENSMEUG00000015788	HFM1	84	64.655	Notamacropus_eugenii
ENSDORG00000014661	Hfm1	84	74.262	ENSOPRG00000013916	HFM1	84	74.262	Ochotona_princeps
ENSDORG00000014661	Hfm1	72	58.601	ENSONIG00000010590	hfm1	100	58.598	Oreochromis_niloticus
ENSDORG00000014661	Hfm1	57	63.373	ENSORLG00000026844	hfm1	99	63.373	Oryzias_latipes
ENSDORG00000014661	Hfm1	85	47.774	ENSORLG00020002951	hfm1	96	47.547	Oryzias_latipes_hni
ENSDORG00000014661	Hfm1	73	56.573	ENSOMEG00000016474	hfm1	75	56.573	Oryzias_melastigma
ENSDORG00000014661	Hfm1	85	79.823	ENSOGAG00000032369	HFM1	99	79.823	Otolemur_garnettii
ENSDORG00000014661	Hfm1	100	76.217	ENSOARG00000015812	HFM1	100	76.217	Ovis_aries
ENSDORG00000014661	Hfm1	92	80.743	ENSPPAG00000024582	HFM1	100	80.743	Pan_paniscus
ENSDORG00000014661	Hfm1	100	77.709	ENSPPRG00000003270	HFM1	100	77.709	Panthera_pardus
ENSDORG00000014661	Hfm1	100	77.503	ENSPTIG00000018881	HFM1	100	77.503	Panthera_tigris_altaica
ENSDORG00000014661	Hfm1	100	78.984	ENSPTRG00000000948	HFM1	100	78.984	Pan_troglodytes
ENSDORG00000014661	Hfm1	100	77.816	ENSPANG00000009838	HFM1	100	77.816	Papio_anubis
ENSDORG00000014661	Hfm1	62	64.609	ENSPKIG00000003810	hfm1	95	64.615	Paramormyrops_kingsleyae
ENSDORG00000014661	Hfm1	58	63.863	ENSPMGG00000011059	hfm1	100	63.863	Periophthalmus_magnuspinnatus
ENSDORG00000014661	Hfm1	100	75.516	ENSPEMG00000022852	Hfm1	100	75.516	Peromyscus_maniculatus_bairdii
ENSDORG00000014661	Hfm1	100	62.135	ENSPCIG00000014233	HFM1	100	62.135	Phascolarctos_cinereus
ENSDORG00000014661	Hfm1	71	59.962	ENSPFOG00000017194	hfm1	99	60.150	Poecilia_formosa
ENSDORG00000014661	Hfm1	71	60.456	ENSPLAG00000000571	hfm1	92	60.456	Poecilia_latipinna
ENSDORG00000014661	Hfm1	71	61.036	ENSPMEG00000019475	hfm1	93	61.036	Poecilia_mexicana
ENSDORG00000014661	Hfm1	71	60.983	ENSPREG00000007803	hfm1	94	63.349	Poecilia_reticulata
ENSDORG00000014661	Hfm1	100	78.503	ENSPPYG00000001163	HFM1	100	78.503	Pongo_abelii
ENSDORG00000014661	Hfm1	71	72.405	ENSPCAG00000004289	-	70	72.405	Procavia_capensis
ENSDORG00000014661	Hfm1	100	69.479	ENSPVAG00000009713	HFM1	100	69.479	Pteropus_vampyrus
ENSDORG00000014661	Hfm1	65	61.158	ENSPNYG00000001795	hfm1	97	62.266	Pundamilia_nyererei
ENSDORG00000014661	Hfm1	59	65.553	ENSPNAG00000010865	hfm1	84	65.553	Pygocentrus_nattereri
ENSDORG00000014661	Hfm1	100	72.421	ENSRNOG00000023299	Hfm1	100	72.421	Rattus_norvegicus
ENSDORG00000014661	Hfm1	100	77.885	ENSRROG00000045569	HFM1	100	77.885	Rhinopithecus_roxellana
ENSDORG00000014661	Hfm1	100	75.481	ENSSBOG00000027456	HFM1	100	75.481	Saimiri_boliviensis_boliviensis
ENSDORG00000014661	Hfm1	60	65.909	ENSSHAG00000014616	-	98	65.909	Sarcophilus_harrisii
ENSDORG00000014661	Hfm1	85	54.027	ENSSFOG00015020129	hfm1	82	54.027	Scleropages_formosus
ENSDORG00000014661	Hfm1	62	63.210	ENSSMAG00000006907	hfm1	87	63.210	Scophthalmus_maximus
ENSDORG00000014661	Hfm1	58	63.679	ENSSDUG00000011424	hfm1	93	63.679	Seriola_dumerili
ENSDORG00000014661	Hfm1	58	63.991	ENSSLDG00000016386	hfm1	92	63.991	Seriola_lalandi_dorsalis
ENSDORG00000014661	Hfm1	66	58.282	ENSSPAG00000001023	hfm1	94	64.160	Stegastes_partitus
ENSDORG00000014661	Hfm1	100	73.985	ENSSSCG00000006912	HFM1	99	76.023	Sus_scrofa
ENSDORG00000014661	Hfm1	66	73.395	ENSTGUG00000006172	HFM1	99	73.395	Taeniopygia_guttata
ENSDORG00000014661	Hfm1	100	73.558	ENSTTRG00000013933	HFM1	100	73.558	Tursiops_truncatus
ENSDORG00000014661	Hfm1	93	76.703	ENSVPAG00000011331	HFM1	93	76.703	Vicugna_pacos
ENSDORG00000014661	Hfm1	71	78.273	ENSVVUG00000020760	HFM1	99	78.273	Vulpes_vulpes
ENSDORG00000014661	Hfm1	61	61.996	ENSXMAG00000004178	hfm1	97	61.996	Xiphophorus_maculatus