EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000016050 (Gene tree)
Gene ID: 105980570
Gene Symbol: Pspc1
Alias: 5730470C09Rik|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 85915 bases
Position: chrKN672347.1:28019483-28105397
Accession: 105980570
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000015096	RRM_1	PF00076.22	4.2e-24	1	2
ENSDORP00000015096	RRM_1	PF00076.22	4.2e-24	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000016050	-	1551	XM_013009459	ENSDORP00000015096	516 (aa)	XP_012864913	UPI000BAD038A

Gene Model

Click here to download ENSDORG00000016050's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000016050's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000016050	Pspc1	90	56.159	ENSDORG00000008109	Sfpq	53	65.867
ENSDORG00000016050	Pspc1	91	56.540	ENSDORG00000009294	Nono	81	64.456

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000016050	Pspc1	100	94.264	ENSG00000121390	PSPC1	100	94.264	Homo_sapiens
ENSDORG00000016050	Pspc1	90	67.556	ENSAPOG00000015946	pspc1	96	62.619	Acanthochromis_polyacanthus
ENSDORG00000016050	Pspc1	100	93.308	ENSAMEG00000017420	PSPC1	100	93.881	Ailuropoda_melanoleuca
ENSDORG00000016050	Pspc1	99	55.000	ENSACIG00000018695	pspc1	100	53.148	Amphilophus_citrinellus
ENSDORG00000016050	Pspc1	90	66.258	ENSAOCG00000005279	pspc1	96	61.977	Amphiprion_ocellaris
ENSDORG00000016050	Pspc1	90	67.292	ENSAPEG00000015927	pspc1	85	67.100	Amphiprion_percula
ENSDORG00000016050	Pspc1	97	52.863	ENSATEG00000004878	pspc1	96	53.626	Anabas_testudineus
ENSDORG00000016050	Pspc1	88	58.584	ENSAPLG00000003643	SFPQ	83	57.082	Anas_platyrhynchos
ENSDORG00000016050	Pspc1	78	94.293	ENSAPLG00000006246	PSPC1	99	94.293	Anas_platyrhynchos
ENSDORG00000016050	Pspc1	88	51.163	ENSACAG00000013307	-	67	54.936	Anolis_carolinensis
ENSDORG00000016050	Pspc1	99	82.095	ENSACAG00000002093	PSPC1	99	80.705	Anolis_carolinensis
ENSDORG00000016050	Pspc1	100	93.881	ENSANAG00000000059	PSPC1	100	94.455	Aotus_nancymaae
ENSDORG00000016050	Pspc1	99	54.935	ENSACLG00000027220	pspc1	100	52.022	Astatotilapia_calliptera
ENSDORG00000016050	Pspc1	90	65.650	ENSAMXG00000036881	pspc1	100	62.637	Astyanax_mexicanus
ENSDORG00000016050	Pspc1	100	92.352	ENSBTAG00000003934	PSPC1	100	92.352	Bos_taurus
ENSDORG00000016050	Pspc1	100	93.881	ENSCJAG00000004554	PSPC1	100	94.455	Callithrix_jacchus
ENSDORG00000016050	Pspc1	100	92.543	ENSCAFG00020002009	PSPC1	100	94.073	Canis_lupus_dingo
ENSDORG00000016050	Pspc1	100	92.352	ENSCHIG00000016708	PSPC1	100	92.352	Capra_hircus
ENSDORG00000016050	Pspc1	79	89.731	ENSTSYG00000032882	PSPC1	88	88.279	Carlito_syrichta
ENSDORG00000016050	Pspc1	100	93.690	ENSCPOG00000000395	PSPC1	100	93.690	Cavia_porcellus
ENSDORG00000016050	Pspc1	100	93.881	ENSCCAG00000033498	PSPC1	100	94.455	Cebus_capucinus
ENSDORG00000016050	Pspc1	100	93.881	ENSCATG00000036434	PSPC1	100	93.881	Cercocebus_atys
ENSDORG00000016050	Pspc1	88	88.889	ENSCLAG00000005241	PSPC1	99	89.278	Chinchilla_lanigera
ENSDORG00000016050	Pspc1	100	87.954	ENSCHOG00000008913	PSPC1	100	87.763	Choloepus_hoffmanni
ENSDORG00000016050	Pspc1	99	83.554	ENSCPBG00000020859	PSPC1	99	83.554	Chrysemys_picta_bellii
ENSDORG00000016050	Pspc1	58	56.169	ENSCSAVG00000003533	-	53	58.929	Ciona_savignyi
ENSDORG00000016050	Pspc1	80	83.855	ENSCANG00000018948	PSPC1	87	99.620	Colobus_angolensis_palliatus
ENSDORG00000016050	Pspc1	100	94.455	ENSCGRG00001018368	Pspc1	100	94.455	Cricetulus_griseus_chok1gshd
ENSDORG00000016050	Pspc1	100	94.455	ENSCGRG00000011724	Pspc1	100	94.455	Cricetulus_griseus_crigri
ENSDORG00000016050	Pspc1	87	63.931	ENSCVAG00000007679	-	91	61.044	Cyprinodon_variegatus
ENSDORG00000016050	Pspc1	99	63.433	ENSDARG00000006621	pspc1	99	68.523	Danio_rerio
ENSDORG00000016050	Pspc1	100	93.308	ENSDNOG00000011078	PSPC1	100	93.308	Dasypus_novemcinctus
ENSDORG00000016050	Pspc1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSDORG00000016050	Pspc1	59	43.452	ENSEBUG00000010133	pspc1	80	45.574	Eptatretus_burgeri
ENSDORG00000016050	Pspc1	88	57.495	ENSEBUG00000003964	-	62	69.275	Eptatretus_burgeri
ENSDORG00000016050	Pspc1	100	93.690	ENSEASG00005000119	PSPC1	100	93.881	Equus_asinus_asinus
ENSDORG00000016050	Pspc1	100	93.690	ENSECAG00000017286	PSPC1	100	93.881	Equus_caballus
ENSDORG00000016050	Pspc1	73	88.525	ENSEEUG00000011288	-	88	79.503	Erinaceus_europaeus
ENSDORG00000016050	Pspc1	99	63.100	ENSELUG00000003746	pspc1	94	68.718	Esox_lucius
ENSDORG00000016050	Pspc1	100	94.073	ENSFCAG00000027841	PSPC1	100	94.073	Felis_catus
ENSDORG00000016050	Pspc1	89	91.649	ENSFALG00000008750	PSPC1	99	84.673	Ficedula_albicollis
ENSDORG00000016050	Pspc1	100	91.205	ENSFDAG00000002617	PSPC1	100	91.205	Fukomys_damarensis
ENSDORG00000016050	Pspc1	88	64.086	ENSGMOG00000015074	pspc1	86	63.226	Gadus_morhua
ENSDORG00000016050	Pspc1	99	84.470	ENSGALG00000017142	PSPC1	99	84.906	Gallus_gallus
ENSDORG00000016050	Pspc1	64	72.434	ENSGAFG00000006327	pspc1	70	71.676	Gambusia_affinis
ENSDORG00000016050	Pspc1	88	62.716	ENSGACG00000014901	pspc1	92	69.113	Gasterosteus_aculeatus
ENSDORG00000016050	Pspc1	91	56.994	ENSGAGG00000017325	-	58	64.380	Gopherus_agassizii
ENSDORG00000016050	Pspc1	89	91.221	ENSGAGG00000019164	PSPC1	99	83.365	Gopherus_agassizii
ENSDORG00000016050	Pspc1	100	94.073	ENSGGOG00000003414	PSPC1	100	94.073	Gorilla_gorilla
ENSDORG00000016050	Pspc1	99	61.967	ENSHBUG00000001139	pspc1	100	61.967	Haplochromis_burtoni
ENSDORG00000016050	Pspc1	100	93.499	ENSHGLG00000018811	PSPC1	100	93.499	Heterocephalus_glaber_female
ENSDORG00000016050	Pspc1	66	88.000	ENSHGLG00100007962	PSPC1	100	88.000	Heterocephalus_glaber_male
ENSDORG00000016050	Pspc1	80	63.357	ENSHCOG00000013251	pspc1	93	63.810	Hippocampus_comes
ENSDORG00000016050	Pspc1	99	64.804	ENSIPUG00000013192	pspc1	100	64.804	Ictalurus_punctatus
ENSDORG00000016050	Pspc1	100	94.455	ENSSTOG00000026833	PSPC1	100	94.455	Ictidomys_tridecemlineatus
ENSDORG00000016050	Pspc1	100	93.690	ENSJJAG00000018334	Pspc1	100	94.264	Jaculus_jaculus
ENSDORG00000016050	Pspc1	88	52.484	ENSKMAG00000013525	-	90	51.129	Kryptolebias_marmoratus
ENSDORG00000016050	Pspc1	96	60.795	ENSLBEG00000004474	pspc1	82	65.714	Labrus_bergylta
ENSDORG00000016050	Pspc1	99	73.704	ENSLACG00000010762	PSPC1	99	74.766	Latimeria_chalumnae
ENSDORG00000016050	Pspc1	88	80.911	ENSLOCG00000010832	pspc1	99	74.761	Lepisosteus_oculatus
ENSDORG00000016050	Pspc1	100	93.499	ENSLAFG00000010968	PSPC1	100	93.499	Loxodonta_africana
ENSDORG00000016050	Pspc1	100	94.073	ENSMFAG00000032728	PSPC1	100	94.073	Macaca_fascicularis
ENSDORG00000016050	Pspc1	100	94.073	ENSMMUG00000020262	PSPC1	100	94.073	Macaca_mulatta
ENSDORG00000016050	Pspc1	100	94.073	ENSMNEG00000027401	PSPC1	100	94.073	Macaca_nemestrina
ENSDORG00000016050	Pspc1	82	100.000	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSDORG00000016050	Pspc1	89	64.490	ENSMAMG00000004333	pspc1	87	64.167	Mastacembelus_armatus
ENSDORG00000016050	Pspc1	99	54.935	ENSMZEG00005005726	pspc1	100	52.022	Maylandia_zebra
ENSDORG00000016050	Pspc1	78	93.842	ENSMGAG00000015134	PSPC1	100	93.842	Meleagris_gallopavo
ENSDORG00000016050	Pspc1	88	89.394	ENSMAUG00000021067	Pspc1	99	89.394	Mesocricetus_auratus
ENSDORG00000016050	Pspc1	100	93.690	ENSMICG00000013970	PSPC1	100	93.690	Microcebus_murinus
ENSDORG00000016050	Pspc1	100	94.264	ENSMOCG00000006060	Pspc1	100	94.264	Microtus_ochrogaster
ENSDORG00000016050	Pspc1	90	41.916	ENSMMOG00000004352	pspc1	59	48.810	Mola_mola
ENSDORG00000016050	Pspc1	93	93.814	ENSMODG00000008029	PSPC1	78	93.814	Monodelphis_domestica
ENSDORG00000016050	Pspc1	88	66.953	ENSMALG00000008914	pspc1	88	65.817	Monopterus_albus
ENSDORG00000016050	Pspc1	100	94.275	MGP_CAROLIEiJ_G0019341	Pspc1	100	94.275	Mus_caroli
ENSDORG00000016050	Pspc1	100	94.466	ENSMUSG00000021938	Pspc1	100	94.466	Mus_musculus
ENSDORG00000016050	Pspc1	100	94.275	MGP_PahariEiJ_G0030359	Pspc1	100	94.275	Mus_pahari
ENSDORG00000016050	Pspc1	100	94.466	MGP_SPRETEiJ_G0020232	Pspc1	100	94.466	Mus_spretus
ENSDORG00000016050	Pspc1	100	93.690	ENSMPUG00000013347	PSPC1	100	93.690	Mustela_putorius_furo
ENSDORG00000016050	Pspc1	100	93.536	ENSMLUG00000017663	PSPC1	100	93.536	Myotis_lucifugus
ENSDORG00000016050	Pspc1	100	94.455	ENSNGAG00000011271	Pspc1	100	94.455	Nannospalax_galili
ENSDORG00000016050	Pspc1	73	61.307	ENSNBRG00000014059	pspc1	92	58.458	Neolamprologus_brichardi
ENSDORG00000016050	Pspc1	100	94.264	ENSNLEG00000001294	PSPC1	100	94.264	Nomascus_leucogenys
ENSDORG00000016050	Pspc1	84	89.844	ENSMEUG00000000476	PSPC1	84	89.844	Notamacropus_eugenii
ENSDORG00000016050	Pspc1	100	81.489	ENSODEG00000019012	-	100	83.588	Octodon_degus
ENSDORG00000016050	Pspc1	100	82.409	ENSODEG00000007817	-	100	78.639	Octodon_degus
ENSDORG00000016050	Pspc1	99	61.967	ENSONIG00000012010	pspc1	99	60.727	Oreochromis_niloticus
ENSDORG00000016050	Pspc1	77	97.243	ENSOANG00000009017	-	100	97.243	Ornithorhynchus_anatinus
ENSDORG00000016050	Pspc1	99	64.313	ENSOANG00000011381	-	99	62.977	Ornithorhynchus_anatinus
ENSDORG00000016050	Pspc1	100	94.646	ENSOCUG00000006153	PSPC1	100	94.646	Oryctolagus_cuniculus
ENSDORG00000016050	Pspc1	88	67.591	ENSORLG00000004232	-	87	62.500	Oryzias_latipes
ENSDORG00000016050	Pspc1	90	66.318	ENSORLG00020000578	PSPC1	90	62.069	Oryzias_latipes_hni
ENSDORG00000016050	Pspc1	88	68.085	ENSORLG00015017480	pspc1	87	65.319	Oryzias_latipes_hsok
ENSDORG00000016050	Pspc1	100	94.646	ENSOGAG00000012643	PSPC1	100	94.646	Otolemur_garnettii
ENSDORG00000016050	Pspc1	100	88.190	ENSOARG00000014163	PSPC1	100	88.190	Ovis_aries
ENSDORG00000016050	Pspc1	89	88.197	ENSPPAG00000009836	PSPC1	98	91.379	Pan_paniscus
ENSDORG00000016050	Pspc1	100	94.073	ENSPPRG00000008833	PSPC1	100	94.073	Panthera_pardus
ENSDORG00000016050	Pspc1	100	83.721	ENSPTIG00000016917	PSPC1	100	83.721	Panthera_tigris_altaica
ENSDORG00000016050	Pspc1	93	94.444	ENSPTRG00000005677	PSPC1	99	94.444	Pan_troglodytes
ENSDORG00000016050	Pspc1	100	94.073	ENSPANG00000001992	PSPC1	100	94.073	Papio_anubis
ENSDORG00000016050	Pspc1	89	72.385	ENSPKIG00000003578	pspc1	89	70.921	Paramormyrops_kingsleyae
ENSDORG00000016050	Pspc1	99	84.181	ENSPSIG00000005168	PSPC1	99	84.557	Pelodiscus_sinensis
ENSDORG00000016050	Pspc1	59	67.949	ENSPMGG00000015135	pspc1	85	67.846	Periophthalmus_magnuspinnatus
ENSDORG00000016050	Pspc1	100	94.837	ENSPEMG00000015214	Pspc1	100	94.837	Peromyscus_maniculatus_bairdii
ENSDORG00000016050	Pspc1	53	44.444	ENSPMAG00000004618	pspc1	87	44.599	Petromyzon_marinus
ENSDORG00000016050	Pspc1	99	93.870	ENSPCIG00000017680	PSPC1	100	93.870	Phascolarctos_cinereus
ENSDORG00000016050	Pspc1	90	65.696	ENSPFOG00000003362	pspc1	97	62.308	Poecilia_formosa
ENSDORG00000016050	Pspc1	70	62.162	ENSPLAG00000004407	-	52	58.177	Poecilia_latipinna
ENSDORG00000016050	Pspc1	92	64.600	ENSPLAG00000011540	pspc1	96	62.308	Poecilia_latipinna
ENSDORG00000016050	Pspc1	67	63.025	ENSPMEG00000001025	-	51	58.537	Poecilia_mexicana
ENSDORG00000016050	Pspc1	92	64.200	ENSPMEG00000008322	pspc1	96	61.923	Poecilia_mexicana
ENSDORG00000016050	Pspc1	92	64.800	ENSPREG00000007786	pspc1	96	62.115	Poecilia_reticulata
ENSDORG00000016050	Pspc1	100	93.690	ENSPPYG00000005186	PSPC1	100	93.881	Pongo_abelii
ENSDORG00000016050	Pspc1	65	100.000	ENSPCAG00000008314	-	64	100.000	Procavia_capensis
ENSDORG00000016050	Pspc1	100	90.057	ENSPCOG00000014364	PSPC1	100	90.057	Propithecus_coquereli
ENSDORG00000016050	Pspc1	100	89.866	ENSPVAG00000005036	PSPC1	100	91.396	Pteropus_vampyrus
ENSDORG00000016050	Pspc1	99	55.121	ENSPNYG00000008893	pspc1	100	52.206	Pundamilia_nyererei
ENSDORG00000016050	Pspc1	99	64.618	ENSPNAG00000016511	pspc1	100	65.363	Pygocentrus_nattereri
ENSDORG00000016050	Pspc1	100	94.264	ENSRNOG00000020782	Pspc1	100	94.264	Rattus_norvegicus
ENSDORG00000016050	Pspc1	93	94.045	ENSRBIG00000036057	PSPC1	100	94.045	Rhinopithecus_bieti
ENSDORG00000016050	Pspc1	100	94.073	ENSRROG00000036334	PSPC1	100	94.073	Rhinopithecus_roxellana
ENSDORG00000016050	Pspc1	80	88.193	ENSSBOG00000028172	PSPC1	91	96.043	Saimiri_boliviensis_boliviensis
ENSDORG00000016050	Pspc1	100	88.571	ENSSHAG00000004696	PSPC1	100	88.571	Sarcophilus_harrisii
ENSDORG00000016050	Pspc1	81	75.701	ENSSFOG00015001395	pspc1	99	71.399	Scleropages_formosus
ENSDORG00000016050	Pspc1	96	62.162	ENSSMAG00000001761	pspc1	86	71.470	Scophthalmus_maximus
ENSDORG00000016050	Pspc1	88	66.126	ENSSDUG00000010651	pspc1	93	62.286	Seriola_dumerili
ENSDORG00000016050	Pspc1	88	61.255	ENSSLDG00000004284	pspc1	100	52.855	Seriola_lalandi_dorsalis
ENSDORG00000016050	Pspc1	100	85.660	ENSSARG00000000888	PSPC1	100	86.807	Sorex_araneus
ENSDORG00000016050	Pspc1	99	72.159	ENSSPUG00000008550	PSPC1	99	73.157	Sphenodon_punctatus
ENSDORG00000016050	Pspc1	90	51.471	ENSSPUG00000001136	-	53	59.104	Sphenodon_punctatus
ENSDORG00000016050	Pspc1	90	65.455	ENSSPAG00000001921	pspc1	82	67.692	Stegastes_partitus
ENSDORG00000016050	Pspc1	100	93.511	ENSSSCG00000009569	PSPC1	100	93.893	Sus_scrofa
ENSDORG00000016050	Pspc1	89	91.649	ENSTGUG00000011295	PSPC1	100	91.649	Taeniopygia_guttata
ENSDORG00000016050	Pspc1	90	60.373	ENSTRUG00000011335	pspc1	79	62.796	Takifugu_rubripes
ENSDORG00000016050	Pspc1	88	62.876	ENSTNIG00000010358	pspc1	91	60.663	Tetraodon_nigroviridis
ENSDORG00000016050	Pspc1	100	76.908	ENSTBEG00000002361	PSPC1	100	76.527	Tupaia_belangeri
ENSDORG00000016050	Pspc1	100	93.702	ENSTTRG00000003343	PSPC1	100	93.702	Tursiops_truncatus
ENSDORG00000016050	Pspc1	67	91.738	ENSUAMG00000012309	PSPC1	99	92.571	Ursus_americanus
ENSDORG00000016050	Pspc1	93	93.840	ENSUMAG00000013993	PSPC1	100	93.840	Ursus_maritimus
ENSDORG00000016050	Pspc1	77	98.496	ENSVPAG00000010029	PSPC1	100	98.496	Vicugna_pacos
ENSDORG00000016050	Pspc1	100	92.543	ENSVVUG00000006414	PSPC1	100	94.073	Vulpes_vulpes
ENSDORG00000016050	Pspc1	65	70.423	ENSXCOG00000017438	pspc1	84	70.423	Xiphophorus_couchianus
ENSDORG00000016050	Pspc1	65	70.704	ENSXMAG00000007929	pspc1	84	70.704	Xiphophorus_maculatus