EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000016200 (Gene tree)
Gene ID: 105990417
Gene Symbol: Safb
Alias: 3110021E02Rik|5330423C17Rik|SAFB1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 35734 bases
Position: chrKN672410.1:2598868-2634601
Accession: 105990417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000020132	RRM_5	PF13893.6	1e-06	1	1
ENSDORP00000015241	RRM_5	PF13893.6	1e-06	1	1
ENSDORP00000020132	RRM_1	PF00076.22	2.8e-13	1	1
ENSDORP00000015241	RRM_1	PF00076.22	2.8e-13	1	1
ENSDORP00000020132	SAP	PF02037.27	1.4e-08	1	1
ENSDORP00000015241	SAP	PF02037.27	1.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000027437	-	2736	-	ENSDORP00000020132	911 (aa)	-	UPI000BACF3EB
ENSDORT00000016201	-	2751	XM_013022799	ENSDORP00000015241	916 (aa)	XP_012878253	UPI000BAD14B6

Gene Model

Click here to download ENSDORG00000016200's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000016200's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000016200	Safb	96	55.626	ENSDORG00000016199	Safb2	66	63.240

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000016200	Safb	100	82.839	ENSG00000160633	SAFB	100	82.503	Homo_sapiens
ENSDORG00000016200	Safb	100	82.135	ENSAMEG00000012254	SAFB	100	81.144	Ailuropoda_melanoleuca
ENSDORG00000016200	Safb	91	39.125	ENSACIG00000006247	safb	70	41.519	Amphilophus_citrinellus
ENSDORG00000016200	Safb	62	60.000	ENSAPLG00000006355	-	65	60.035	Anas_platyrhynchos
ENSDORG00000016200	Safb	93	56.949	ENSAPLG00000005780	-	66	58.763	Anas_platyrhynchos
ENSDORG00000016200	Safb	100	82.733	ENSANAG00000028821	SAFB	100	82.609	Aotus_nancymaae
ENSDORG00000016200	Safb	91	42.334	ENSAMXG00000018154	safb	62	42.810	Astyanax_mexicanus
ENSDORG00000016200	Safb	100	80.446	ENSBTAG00000007875	SAFB	100	79.533	Bos_taurus
ENSDORG00000016200	Safb	83	88.679	ENSCJAG00000017081	SAFB	100	88.679	Callithrix_jacchus
ENSDORG00000016200	Safb	100	83.051	ENSCAFG00000018803	SAFB	87	82.803	Canis_familiaris
ENSDORG00000016200	Safb	100	83.051	ENSCAFG00020018943	SAFB	100	83.015	Canis_lupus_dingo
ENSDORG00000016200	Safb	100	79.702	ENSCHIG00000007262	SAFB	98	86.792	Capra_hircus
ENSDORG00000016200	Safb	62	85.166	ENSCAPG00000012121	SAFB	75	85.345	Cavia_aperea
ENSDORG00000016200	Safb	100	83.386	ENSCPOG00000026322	SAFB	100	83.228	Cavia_porcellus
ENSDORG00000016200	Safb	100	83.263	ENSCCAG00000020193	SAFB	100	82.927	Cebus_capucinus
ENSDORG00000016200	Safb	100	82.839	ENSCATG00000029994	SAFB	100	82.609	Cercocebus_atys
ENSDORG00000016200	Safb	100	86.364	ENSCLAG00000007734	SAFB	100	83.581	Chinchilla_lanigera
ENSDORG00000016200	Safb	100	82.733	ENSCSAG00000009949	SAFB	100	82.503	Chlorocebus_sabaeus
ENSDORG00000016200	Safb	86	92.857	ENSCHOG00000003208	SAFB	93	92.857	Choloepus_hoffmanni
ENSDORG00000016200	Safb	91	55.691	ENSCPBG00000010936	-	63	57.388	Chrysemys_picta_bellii
ENSDORG00000016200	Safb	91	58.553	ENSCPBG00000010928	-	64	57.989	Chrysemys_picta_bellii
ENSDORG00000016200	Safb	97	83.384	ENSCANG00000004774	-	99	90.863	Colobus_angolensis_palliatus
ENSDORG00000016200	Safb	100	78.427	ENSCANG00000019754	-	100	75.053	Colobus_angolensis_palliatus
ENSDORG00000016200	Safb	100	79.579	ENSCGRG00001002254	Safb	100	79.852	Cricetulus_griseus_chok1gshd
ENSDORG00000016200	Safb	90	77.149	ENSCGRG00000011529	Safb	96	77.438	Cricetulus_griseus_crigri
ENSDORG00000016200	Safb	93	37.762	ENSCSEG00000019870	safb	65	39.008	Cynoglossus_semilaevis
ENSDORG00000016200	Safb	90	39.370	ENSDARG00000020467	safb	59	56.410	Danio_rerio
ENSDORG00000016200	Safb	100	81.356	ENSDNOG00000015746	SAFB	87	81.509	Dasypus_novemcinctus
ENSDORG00000016200	Safb	82	83.571	ENSETEG00000018679	SAFB	83	83.571	Echinops_telfairi
ENSDORG00000016200	Safb	100	80.611	ENSEASG00005023019	SAFB	98	79.720	Equus_asinus_asinus
ENSDORG00000016200	Safb	100	81.992	ENSECAG00000018659	SAFB	89	82.147	Equus_caballus
ENSDORG00000016200	Safb	94	42.007	ENSELUG00000022327	safb	78	50.943	Esox_lucius
ENSDORG00000016200	Safb	100	83.563	ENSFCAG00000011835	SAFB	100	83.528	Felis_catus
ENSDORG00000016200	Safb	59	57.391	ENSFALG00000013881	-	64	57.785	Ficedula_albicollis
ENSDORG00000016200	Safb	100	57.339	ENSFALG00000013882	-	59	60.522	Ficedula_albicollis
ENSDORG00000016200	Safb	94	89.655	ENSFDAG00000020306	SAFB	99	89.655	Fukomys_damarensis
ENSDORG00000016200	Safb	100	57.611	ENSGALG00000013365	-	65	60.784	Gallus_gallus
ENSDORG00000016200	Safb	68	54.955	ENSGALG00000001948	-	64	59.370	Gallus_gallus
ENSDORG00000016200	Safb	95	38.429	ENSGACG00000011385	safb	64	41.034	Gasterosteus_aculeatus
ENSDORG00000016200	Safb	96	57.233	ENSGAGG00000008424	-	67	58.621	Gopherus_agassizii
ENSDORG00000016200	Safb	72	53.659	ENSGAGG00000017702	-	70	54.896	Gopherus_agassizii
ENSDORG00000016200	Safb	100	82.627	ENSGGOG00000015109	SAFB	100	82.397	Gorilla_gorilla
ENSDORG00000016200	Safb	95	37.402	ENSHBUG00000009218	safb	67	39.669	Haplochromis_burtoni
ENSDORG00000016200	Safb	100	86.638	ENSHGLG00000015883	SAFB	100	86.823	Heterocephalus_glaber_female
ENSDORG00000016200	Safb	69	90.938	ENSHGLG00100004228	SAFB	75	91.038	Heterocephalus_glaber_male
ENSDORG00000016200	Safb	91	35.682	ENSHCOG00000001705	safb	64	36.968	Hippocampus_comes
ENSDORG00000016200	Safb	56	47.748	ENSIPUG00000024869	safb2	63	44.572	Ictalurus_punctatus
ENSDORG00000016200	Safb	93	86.234	ENSSTOG00000002783	SAFB	100	86.659	Ictidomys_tridecemlineatus
ENSDORG00000016200	Safb	100	80.526	ENSJJAG00000009021	Safb	100	81.224	Jaculus_jaculus
ENSDORG00000016200	Safb	95	39.117	ENSLBEG00000006015	safb	63	43.137	Labrus_bergylta
ENSDORG00000016200	Safb	66	50.955	ENSLACG00000018090	SAFB	67	50.932	Latimeria_chalumnae
ENSDORG00000016200	Safb	97	44.059	ENSLOCG00000003613	safb	73	43.359	Lepisosteus_oculatus
ENSDORG00000016200	Safb	99	82.637	ENSLAFG00000003840	SAFB	100	81.886	Loxodonta_africana
ENSDORG00000016200	Safb	100	82.945	ENSMFAG00000003885	SAFB	100	82.609	Macaca_fascicularis
ENSDORG00000016200	Safb	100	82.839	ENSMMUG00000017970	SAFB	100	82.609	Macaca_mulatta
ENSDORG00000016200	Safb	100	79.979	ENSMNEG00000035637	SAFB	100	80.597	Macaca_nemestrina
ENSDORG00000016200	Safb	100	77.966	ENSMLEG00000038637	SAFB	88	90.323	Mandrillus_leucophaeus
ENSDORG00000016200	Safb	89	40.115	ENSMZEG00005009120	safb	65	42.055	Maylandia_zebra
ENSDORG00000016200	Safb	68	55.799	ENSMGAG00000001051	-	75	55.487	Meleagris_gallopavo
ENSDORG00000016200	Safb	97	55.738	ENSMGAG00000001101	-	66	57.049	Meleagris_gallopavo
ENSDORG00000016200	Safb	51	79.435	ENSMAUG00000005013	Safb	96	72.363	Mesocricetus_auratus
ENSDORG00000016200	Safb	100	82.265	ENSMICG00000008739	-	100	81.064	Microcebus_murinus
ENSDORG00000016200	Safb	85	74.304	ENSMICG00000046795	-	99	86.316	Microcebus_murinus
ENSDORG00000016200	Safb	100	79.557	ENSMOCG00000014040	Safb	100	80.042	Microtus_ochrogaster
ENSDORG00000016200	Safb	100	65.456	ENSMODG00000001236	SAFB	68	68.397	Monodelphis_domestica
ENSDORG00000016200	Safb	89	39.886	ENSMALG00000020330	safb	68	42.180	Monopterus_albus
ENSDORG00000016200	Safb	100	79.789	MGP_CAROLIEiJ_G0021780	Safb	100	80.274	Mus_caroli
ENSDORG00000016200	Safb	100	79.895	ENSMUSG00000071054	Safb	100	80.485	Mus_musculus
ENSDORG00000016200	Safb	100	79.495	MGP_PahariEiJ_G0020769	Safb	100	79.979	Mus_pahari
ENSDORG00000016200	Safb	100	82.733	ENSMPUG00000006123	SAFB	94	82.696	Mustela_putorius_furo
ENSDORG00000016200	Safb	100	83.652	ENSMLUG00000001081	SAFB	100	81.847	Myotis_lucifugus
ENSDORG00000016200	Safb	100	78.046	ENSNGAG00000019882	Safb	100	78.211	Nannospalax_galili
ENSDORG00000016200	Safb	99	79.684	ENSNLEG00000013551	SAFB	99	82.171	Nomascus_leucogenys
ENSDORG00000016200	Safb	89	79.162	ENSOPRG00000011561	-	100	79.808	Ochotona_princeps
ENSDORG00000016200	Safb	100	86.575	ENSODEG00000014838	SAFB	100	86.758	Octodon_degus
ENSDORG00000016200	Safb	89	39.907	ENSONIG00000002318	safb	64	42.488	Oreochromis_niloticus
ENSDORG00000016200	Safb	90	77.310	ENSOCUG00000014628	SAFB	64	83.883	Oryctolagus_cuniculus
ENSDORG00000016200	Safb	78	42.745	ENSORLG00020000404	safb	51	54.694	Oryzias_latipes_hni
ENSDORG00000016200	Safb	100	81.663	ENSOGAG00000027769	SAFB	100	79.936	Otolemur_garnettii
ENSDORG00000016200	Safb	100	79.744	ENSOARG00000007662	-	73	82.941	Ovis_aries
ENSDORG00000016200	Safb	78	77.917	ENSOARG00000007856	-	80	81.961	Ovis_aries
ENSDORG00000016200	Safb	100	82.733	ENSPPAG00000035129	SAFB	100	82.397	Pan_paniscus
ENSDORG00000016200	Safb	100	83.563	ENSPPRG00000017197	SAFB	100	83.528	Panthera_pardus
ENSDORG00000016200	Safb	100	82.733	ENSPTRG00000010335	SAFB	100	82.397	Pan_troglodytes
ENSDORG00000016200	Safb	100	82.839	ENSPANG00000007770	SAFB	100	82.503	Papio_anubis
ENSDORG00000016200	Safb	92	42.035	ENSPKIG00000009902	safb	65	43.651	Paramormyrops_kingsleyae
ENSDORG00000016200	Safb	100	56.877	ENSPSIG00000011679	-	64	59.067	Pelodiscus_sinensis
ENSDORG00000016200	Safb	99	57.098	ENSPSIG00000009367	-	64	57.327	Pelodiscus_sinensis
ENSDORG00000016200	Safb	100	80.927	ENSPEMG00000020428	Safb	100	81.309	Peromyscus_maniculatus_bairdii
ENSDORG00000016200	Safb	72	44.848	ENSPFOG00000007745	safb	50	54.331	Poecilia_formosa
ENSDORG00000016200	Safb	72	44.848	ENSPMEG00000021023	safb	50	54.331	Poecilia_mexicana
ENSDORG00000016200	Safb	71	42.379	ENSPREG00000012496	safb	51	54.724	Poecilia_reticulata
ENSDORG00000016200	Safb	100	82.627	ENSPPYG00000009428	SAFB	100	82.397	Pongo_abelii
ENSDORG00000016200	Safb	100	79.127	ENSPCAG00000006475	SAFB	100	77.742	Procavia_capensis
ENSDORG00000016200	Safb	100	80.753	ENSPCOG00000014090	SAFB	100	77.564	Propithecus_coquereli
ENSDORG00000016200	Safb	100	77.046	ENSPVAG00000004913	SAFB	100	75.452	Pteropus_vampyrus
ENSDORG00000016200	Safb	93	42.889	ENSPNAG00000021838	safb	64	42.605	Pygocentrus_nattereri
ENSDORG00000016200	Safb	100	80.547	ENSRNOG00000050543	Safb	100	80.717	Rattus_norvegicus
ENSDORG00000016200	Safb	96	78.014	ENSRBIG00000042509	SAFB	88	91.398	Rhinopithecus_bieti
ENSDORG00000016200	Safb	100	83.051	ENSRROG00000029278	SAFB	100	82.715	Rhinopithecus_roxellana
ENSDORG00000016200	Safb	100	83.157	ENSSBOG00000026291	SAFB	100	82.927	Saimiri_boliviensis_boliviensis
ENSDORG00000016200	Safb	95	42.440	ENSSFOG00015008156	safb	65	45.166	Scleropages_formosus
ENSDORG00000016200	Safb	93	76.531	ENSSARG00000010475	SAFB	100	77.221	Sorex_araneus
ENSDORG00000016200	Safb	59	53.875	ENSSPUG00000009747	-	67	53.506	Sphenodon_punctatus
ENSDORG00000016200	Safb	55	52.908	ENSSPUG00000009820	-	64	54.766	Sphenodon_punctatus
ENSDORG00000016200	Safb	68	47.368	ENSSPAG00000015682	safb	56	58.130	Stegastes_partitus
ENSDORG00000016200	Safb	100	82.513	ENSSSCG00000013522	SAFB	99	82.170	Sus_scrofa
ENSDORG00000016200	Safb	68	58.529	ENSTGUG00000000489	-	68	61.248	Taeniopygia_guttata
ENSDORG00000016200	Safb	89	38.856	ENSTRUG00000003567	safb	64	39.739	Takifugu_rubripes
ENSDORG00000016200	Safb	88	40.071	ENSTNIG00000015470	safb	73	40.291	Tetraodon_nigroviridis
ENSDORG00000016200	Safb	54	87.692	ENSTBEG00000013124	-	60	87.692	Tupaia_belangeri
ENSDORG00000016200	Safb	92	93.651	ENSTTRG00000013588	SAFB	92	93.651	Tursiops_truncatus
ENSDORG00000016200	Safb	78	81.191	ENSUAMG00000024543	SAFB	91	80.978	Ursus_americanus
ENSDORG00000016200	Safb	85	90.780	ENSUMAG00000009734	SAFB	97	85.156	Ursus_maritimus
ENSDORG00000016200	Safb	67	89.231	ENSVPAG00000012043	SAFB	67	91.139	Vicugna_pacos
ENSDORG00000016200	Safb	100	83.051	ENSVVUG00000013720	SAFB	87	82.803	Vulpes_vulpes
ENSDORG00000016200	Safb	91	48.878	ENSXETG00000008755	safb	64	68.182	Xenopus_tropicalis
ENSDORG00000016200	Safb	74	44.242	ENSXMAG00000003458	safb	50	54.331	Xiphophorus_maculatus