EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000016381 (Gene tree)
Gene ID: 105997578
Gene Symbol: Lsm12
Alias: -
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 20118 bases
Position: chrKN672493.1:1418728-1438845
Accession: 105997578
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000016582	AD	PF09793.9	1.7e-24	1	1
ENSDORP00000015413	AD	PF09793.9	2.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000016381	-	414	-	ENSDORP00000015413	137 (aa)	-	UPI0000416DA0
ENSDORT00000027695	-	2268	XM_013032058	ENSDORP00000016582	195 (aa)	XP_012887512	A0A1S3GHM5

Gene Model

Click here to download ENSDORG00000016381's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000016381's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000016381	Lsm12	100	100.000	ENSG00000161654	LSM12	100	100.000	Homo_sapiens
ENSDORG00000016381	Lsm12	100	86.224	ENSAPOG00000007907	lsm12b	100	86.224	Acanthochromis_polyacanthus
ENSDORG00000016381	Lsm12	100	100.000	ENSAMEG00000018321	LSM12	100	97.980	Ailuropoda_melanoleuca
ENSDORG00000016381	Lsm12	100	84.184	ENSACIG00000008538	lsm12b	100	84.184	Amphilophus_citrinellus
ENSDORG00000016381	Lsm12	100	85.714	ENSAOCG00000021847	lsm12b	88	85.714	Amphiprion_ocellaris
ENSDORG00000016381	Lsm12	100	85.714	ENSAPEG00000002252	lsm12b	100	85.714	Amphiprion_percula
ENSDORG00000016381	Lsm12	100	85.204	ENSATEG00000005705	lsm12b	100	85.204	Anabas_testudineus
ENSDORG00000016381	Lsm12	99	93.782	ENSACAG00000004618	LSM12	99	93.782	Anolis_carolinensis
ENSDORG00000016381	Lsm12	100	100.000	ENSANAG00000029011	LSM12	100	100.000	Aotus_nancymaae
ENSDORG00000016381	Lsm12	100	84.694	ENSACLG00000026332	lsm12b	100	84.694	Astatotilapia_calliptera
ENSDORG00000016381	Lsm12	100	84.694	ENSAMXG00000032952	lsm12b	100	84.694	Astyanax_mexicanus
ENSDORG00000016381	Lsm12	100	81.982	ENSAMXG00000036117	lsm12a	91	79.082	Astyanax_mexicanus
ENSDORG00000016381	Lsm12	100	100.000	ENSBTAG00000016252	LSM12	100	100.000	Bos_taurus
ENSDORG00000016381	Lsm12	100	100.000	ENSCJAG00000048480	LSM12	100	100.000	Callithrix_jacchus
ENSDORG00000016381	Lsm12	100	100.000	ENSCAFG00000014379	LSM12	92	100.000	Canis_familiaris
ENSDORG00000016381	Lsm12	100	100.000	ENSCAFG00020012173	LSM12	100	100.000	Canis_lupus_dingo
ENSDORG00000016381	Lsm12	100	100.000	ENSCHIG00000018175	LSM12	100	100.000	Capra_hircus
ENSDORG00000016381	Lsm12	100	100.000	ENSTSYG00000036361	LSM12	100	100.000	Carlito_syrichta
ENSDORG00000016381	Lsm12	83	94.444	ENSCAPG00000009647	LSM12	89	94.444	Cavia_aperea
ENSDORG00000016381	Lsm12	100	98.165	ENSCPOG00000012860	LSM12	100	98.165	Cavia_porcellus
ENSDORG00000016381	Lsm12	100	100.000	ENSCCAG00000032905	LSM12	100	100.000	Cebus_capucinus
ENSDORG00000016381	Lsm12	100	100.000	ENSCATG00000030577	-	100	100.000	Cercocebus_atys
ENSDORG00000016381	Lsm12	100	98.974	ENSCLAG00000015759	LSM12	100	98.974	Chinchilla_lanigera
ENSDORG00000016381	Lsm12	100	99.487	ENSCSAG00000003486	LSM12	100	99.487	Chlorocebus_sabaeus
ENSDORG00000016381	Lsm12	80	99.083	ENSCHOG00000001198	LSM12	100	99.083	Choloepus_hoffmanni
ENSDORG00000016381	Lsm12	99	93.264	ENSCPBG00000027105	LSM12	99	93.264	Chrysemys_picta_bellii
ENSDORG00000016381	Lsm12	100	100.000	ENSCANG00000043328	LSM12	100	100.000	Colobus_angolensis_palliatus
ENSDORG00000016381	Lsm12	100	100.000	ENSCGRG00001002094	Lsm12	100	100.000	Cricetulus_griseus_chok1gshd
ENSDORG00000016381	Lsm12	80	100.000	ENSCGRG00000004316	Lsm12	95	92.857	Cricetulus_griseus_crigri
ENSDORG00000016381	Lsm12	100	84.694	ENSCSEG00000008434	lsm12b	100	84.694	Cynoglossus_semilaevis
ENSDORG00000016381	Lsm12	100	85.455	ENSCVAG00000008755	lsm12b	100	84.694	Cyprinodon_variegatus
ENSDORG00000016381	Lsm12	100	77.041	ENSDARG00000028848	lsm12a	100	77.041	Danio_rerio
ENSDORG00000016381	Lsm12	100	85.204	ENSDARG00000109510	lsm12b	100	85.204	Danio_rerio
ENSDORG00000016381	Lsm12	100	99.487	ENSDNOG00000002418	LSM12	91	99.487	Dasypus_novemcinctus
ENSDORG00000016381	Lsm12	83	33.133	FBgn0030364	Lsm12	76	32.934	Drosophila_melanogaster
ENSDORG00000016381	Lsm12	74	31.646	FBgn0036057	CG14164	83	31.646	Drosophila_melanogaster
ENSDORG00000016381	Lsm12	100	100.000	ENSETEG00000008374	LSM12	100	99.487	Echinops_telfairi
ENSDORG00000016381	Lsm12	90	88.000	ENSETEG00000011012	-	100	88.000	Echinops_telfairi
ENSDORG00000016381	Lsm12	84	63.415	ENSEBUG00000016299	lsm12a	92	63.415	Eptatretus_burgeri
ENSDORG00000016381	Lsm12	100	100.000	ENSEASG00005010155	LSM12	100	100.000	Equus_asinus_asinus
ENSDORG00000016381	Lsm12	100	100.000	ENSECAG00000009071	LSM12	100	100.000	Equus_caballus
ENSDORG00000016381	Lsm12	81	96.396	ENSEEUG00000002419	-	100	98.693	Erinaceus_europaeus
ENSDORG00000016381	Lsm12	100	82.143	ENSELUG00000000256	-	100	82.143	Esox_lucius
ENSDORG00000016381	Lsm12	100	84.184	ENSELUG00000015538	lsm12b	100	79.592	Esox_lucius
ENSDORG00000016381	Lsm12	100	100.000	ENSFCAG00000037021	LSM12	100	100.000	Felis_catus
ENSDORG00000016381	Lsm12	81	97.297	ENSFDAG00000008954	LSM12	87	99.324	Fukomys_damarensis
ENSDORG00000016381	Lsm12	100	84.545	ENSFHEG00000019913	lsm12b	100	83.673	Fundulus_heteroclitus
ENSDORG00000016381	Lsm12	81	84.685	ENSGMOG00000015449	lsm12b	100	84.177	Gadus_morhua
ENSDORG00000016381	Lsm12	80	92.661	ENSGALG00000039803	LSM12	100	94.118	Gallus_gallus
ENSDORG00000016381	Lsm12	100	85.455	ENSGAFG00000011829	lsm12b	100	84.184	Gambusia_affinis
ENSDORG00000016381	Lsm12	81	84.810	ENSGACG00000003428	lsm12b	100	84.810	Gasterosteus_aculeatus
ENSDORG00000016381	Lsm12	99	94.301	ENSGAGG00000021965	LSM12	99	94.301	Gopherus_agassizii
ENSDORG00000016381	Lsm12	100	100.000	ENSGGOG00000010589	-	100	100.000	Gorilla_gorilla
ENSDORG00000016381	Lsm12	85	85.629	ENSHBUG00000007667	lsm12b	74	85.629	Haplochromis_burtoni
ENSDORG00000016381	Lsm12	100	100.000	ENSHGLG00000011411	LSM12	100	100.000	Heterocephalus_glaber_female
ENSDORG00000016381	Lsm12	80	99.091	ENSHGLG00100000241	LSM12	96	87.293	Heterocephalus_glaber_male
ENSDORG00000016381	Lsm12	100	84.184	ENSHCOG00000002094	lsm12b	100	84.184	Hippocampus_comes
ENSDORG00000016381	Lsm12	99	77.778	ENSIPUG00000008936	lsm12a	99	75.773	Ictalurus_punctatus
ENSDORG00000016381	Lsm12	100	85.204	ENSIPUG00000014800	lsm12	100	85.204	Ictalurus_punctatus
ENSDORG00000016381	Lsm12	100	100.000	ENSSTOG00000007403	LSM12	100	100.000	Ictidomys_tridecemlineatus
ENSDORG00000016381	Lsm12	100	99.270	ENSJJAG00000004364	-	100	99.270	Jaculus_jaculus
ENSDORG00000016381	Lsm12	97	87.895	ENSJJAG00000011793	-	100	87.895	Jaculus_jaculus
ENSDORG00000016381	Lsm12	81	84.906	ENSJJAG00000014652	-	95	84.906	Jaculus_jaculus
ENSDORG00000016381	Lsm12	86	86.310	ENSKMAG00000007704	lsm12b	57	86.310	Kryptolebias_marmoratus
ENSDORG00000016381	Lsm12	100	85.714	ENSLBEG00000027999	lsm12b	100	85.714	Labrus_bergylta
ENSDORG00000016381	Lsm12	99	90.909	ENSLACG00000015981	LSM12	99	90.155	Latimeria_chalumnae
ENSDORG00000016381	Lsm12	100	86.486	ENSLOCG00000013079	lsm12b	99	83.673	Lepisosteus_oculatus
ENSDORG00000016381	Lsm12	100	100.000	ENSLAFG00000005202	LSM12	100	100.000	Loxodonta_africana
ENSDORG00000016381	Lsm12	100	100.000	ENSMFAG00000031376	LSM12	100	100.000	Macaca_fascicularis
ENSDORG00000016381	Lsm12	100	67.883	ENSMMUG00000042106	-	100	86.207	Macaca_mulatta
ENSDORG00000016381	Lsm12	100	100.000	ENSMMUG00000006804	LSM12	100	100.000	Macaca_mulatta
ENSDORG00000016381	Lsm12	100	67.153	ENSMMUG00000038408	-	100	86.207	Macaca_mulatta
ENSDORG00000016381	Lsm12	100	100.000	ENSMNEG00000030594	-	100	100.000	Macaca_nemestrina
ENSDORG00000016381	Lsm12	100	100.000	ENSMLEG00000039934	LSM12	100	100.000	Mandrillus_leucophaeus
ENSDORG00000016381	Lsm12	100	85.204	ENSMAMG00000004279	lsm12b	100	85.204	Mastacembelus_armatus
ENSDORG00000016381	Lsm12	100	84.694	ENSMZEG00005005754	lsm12b	100	84.694	Maylandia_zebra
ENSDORG00000016381	Lsm12	100	99.487	ENSMICG00000037219	LSM12	100	99.487	Microcebus_murinus
ENSDORG00000016381	Lsm12	100	84.103	ENSMOCG00000017015	-	86	84.103	Microtus_ochrogaster
ENSDORG00000016381	Lsm12	100	100.000	ENSMOCG00000019878	-	100	100.000	Microtus_ochrogaster
ENSDORG00000016381	Lsm12	100	85.204	ENSMMOG00000020848	lsm12b	100	85.204	Mola_mola
ENSDORG00000016381	Lsm12	100	85.204	ENSMALG00000007578	lsm12b	100	85.204	Monopterus_albus
ENSDORG00000016381	Lsm12	100	99.487	MGP_CAROLIEiJ_G0017241	Lsm12	100	99.487	Mus_caroli
ENSDORG00000016381	Lsm12	100	100.000	ENSMUSG00000020922	Lsm12	100	100.000	Mus_musculus
ENSDORG00000016381	Lsm12	100	100.000	MGP_PahariEiJ_G0018371	Lsm12	100	100.000	Mus_pahari
ENSDORG00000016381	Lsm12	100	99.487	MGP_SPRETEiJ_G0018084	Lsm12	100	99.487	Mus_spretus
ENSDORG00000016381	Lsm12	100	99.487	ENSMLUG00000006391	LSM12	100	99.487	Myotis_lucifugus
ENSDORG00000016381	Lsm12	100	100.000	ENSNGAG00000001870	Lsm12	100	100.000	Nannospalax_galili
ENSDORG00000016381	Lsm12	100	67.327	ENSNGAG00000015429	-	100	67.327	Nannospalax_galili
ENSDORG00000016381	Lsm12	100	84.694	ENSNBRG00000006266	lsm12b	100	84.694	Neolamprologus_brichardi
ENSDORG00000016381	Lsm12	100	100.000	ENSNLEG00000005580	-	100	100.000	Nomascus_leucogenys
ENSDORG00000016381	Lsm12	85	98.182	ENSMEUG00000007501	-	100	98.182	Notamacropus_eugenii
ENSDORG00000016381	Lsm12	100	100.000	ENSOPRG00000008552	LSM12	100	100.000	Ochotona_princeps
ENSDORG00000016381	Lsm12	100	88.718	ENSODEG00000007886	-	74	88.718	Octodon_degus
ENSDORG00000016381	Lsm12	100	98.462	ENSODEG00000017998	-	100	98.462	Octodon_degus
ENSDORG00000016381	Lsm12	100	84.694	ENSONIG00000007933	lsm12b	100	84.694	Oreochromis_niloticus
ENSDORG00000016381	Lsm12	54	95.946	ENSOANG00000031724	-	100	90.123	Ornithorhynchus_anatinus
ENSDORG00000016381	Lsm12	100	100.000	ENSOCUG00000008566	-	100	97.980	Oryctolagus_cuniculus
ENSDORG00000016381	Lsm12	99	92.661	ENSOCUG00000024823	-	100	92.268	Oryctolagus_cuniculus
ENSDORG00000016381	Lsm12	99	93.636	ENSOCUG00000027889	-	100	93.299	Oryctolagus_cuniculus
ENSDORG00000016381	Lsm12	99	93.299	ENSOCUG00000021254	-	100	93.299	Oryctolagus_cuniculus
ENSDORG00000016381	Lsm12	100	85.204	ENSORLG00000011310	lsm12b	100	85.204	Oryzias_latipes
ENSDORG00000016381	Lsm12	100	85.204	ENSORLG00020002060	lsm12b	92	85.204	Oryzias_latipes_hni
ENSDORG00000016381	Lsm12	100	85.204	ENSORLG00015001647	lsm12b	92	85.204	Oryzias_latipes_hsok
ENSDORG00000016381	Lsm12	100	85.204	ENSOMEG00000006184	lsm12b	92	85.204	Oryzias_melastigma
ENSDORG00000016381	Lsm12	100	99.487	ENSOGAG00000010489	LSM12	100	99.487	Otolemur_garnettii
ENSDORG00000016381	Lsm12	100	100.000	ENSOARG00000006589	LSM12	100	96.517	Ovis_aries
ENSDORG00000016381	Lsm12	100	92.254	ENSPPAG00000034974	-	100	92.254	Pan_paniscus
ENSDORG00000016381	Lsm12	100	100.000	ENSPPRG00000023420	LSM12	100	100.000	Panthera_pardus
ENSDORG00000016381	Lsm12	100	98.540	ENSPTIG00000014850	-	100	98.540	Panthera_tigris_altaica
ENSDORG00000016381	Lsm12	81	98.198	ENSPTIG00000012704	-	82	100.000	Panthera_tigris_altaica
ENSDORG00000016381	Lsm12	100	100.000	ENSPTRG00000009261	LSM12	100	100.000	Pan_troglodytes
ENSDORG00000016381	Lsm12	100	100.000	ENSPANG00000021315	-	100	100.000	Papio_anubis
ENSDORG00000016381	Lsm12	100	86.486	ENSPKIG00000021058	lsm12b	100	86.224	Paramormyrops_kingsleyae
ENSDORG00000016381	Lsm12	99	76.804	ENSPKIG00000017932	-	99	76.804	Paramormyrops_kingsleyae
ENSDORG00000016381	Lsm12	100	84.694	ENSPMGG00000021344	lsm12b	100	84.694	Periophthalmus_magnuspinnatus
ENSDORG00000016381	Lsm12	100	100.000	ENSPEMG00000012199	Lsm12	100	100.000	Peromyscus_maniculatus_bairdii
ENSDORG00000016381	Lsm12	88	66.279	ENSPMAG00000005461	lsm12a	99	66.279	Petromyzon_marinus
ENSDORG00000016381	Lsm12	100	96.923	ENSPCIG00000020244	LSM12	100	96.923	Phascolarctos_cinereus
ENSDORG00000016381	Lsm12	100	84.685	ENSPFOG00000015930	lsm12b	100	83.163	Poecilia_formosa
ENSDORG00000016381	Lsm12	100	84.685	ENSPLAG00000021089	lsm12b	100	83.163	Poecilia_latipinna
ENSDORG00000016381	Lsm12	100	84.685	ENSPMEG00000012961	lsm12b	100	83.163	Poecilia_mexicana
ENSDORG00000016381	Lsm12	88	85.380	ENSPREG00000010236	lsm12b	95	85.380	Poecilia_reticulata
ENSDORG00000016381	Lsm12	100	100.000	ENSPPYG00000008344	LSM12	100	100.000	Pongo_abelii
ENSDORG00000016381	Lsm12	82	99.371	ENSPCAG00000008790	LSM12	100	99.371	Procavia_capensis
ENSDORG00000016381	Lsm12	100	100.000	ENSPCOG00000027951	LSM12	100	100.000	Propithecus_coquereli
ENSDORG00000016381	Lsm12	100	99.487	ENSPVAG00000013706	LSM12	100	99.487	Pteropus_vampyrus
ENSDORG00000016381	Lsm12	100	84.694	ENSPNYG00000003386	lsm12b	100	84.694	Pundamilia_nyererei
ENSDORG00000016381	Lsm12	100	81.982	ENSPNAG00000018435	lsm12a	100	77.041	Pygocentrus_nattereri
ENSDORG00000016381	Lsm12	100	84.545	ENSPNAG00000004186	lsm12b	100	83.163	Pygocentrus_nattereri
ENSDORG00000016381	Lsm12	100	100.000	ENSRNOG00000020894	Lsm12	100	100.000	Rattus_norvegicus
ENSDORG00000016381	Lsm12	100	100.000	ENSRBIG00000027910	LSM12	100	100.000	Rhinopithecus_bieti
ENSDORG00000016381	Lsm12	100	100.000	ENSRROG00000045530	-	100	100.000	Rhinopithecus_roxellana
ENSDORG00000016381	Lsm12	100	83.212	ENSRROG00000000537	-	100	83.212	Rhinopithecus_roxellana
ENSDORG00000016381	Lsm12	77	33.051	YHR121W	-	61	33.051	Saccharomyces_cerevisiae
ENSDORG00000016381	Lsm12	100	100.000	ENSSBOG00000025310	LSM12	100	100.000	Saimiri_boliviensis_boliviensis
ENSDORG00000016381	Lsm12	81	94.595	ENSSHAG00000014914	LSM12	100	94.304	Sarcophilus_harrisii
ENSDORG00000016381	Lsm12	100	86.224	ENSSFOG00015009612	lsm12	100	86.224	Scleropages_formosus
ENSDORG00000016381	Lsm12	100	83.163	ENSSFOG00015020392	lsm12a	100	83.163	Scleropages_formosus
ENSDORG00000016381	Lsm12	100	85.204	ENSSMAG00000008089	lsm12b	100	85.204	Scophthalmus_maximus
ENSDORG00000016381	Lsm12	100	86.224	ENSSDUG00000012711	lsm12b	100	86.224	Seriola_dumerili
ENSDORG00000016381	Lsm12	100	86.224	ENSSLDG00000007404	lsm12b	100	86.224	Seriola_lalandi_dorsalis
ENSDORG00000016381	Lsm12	81	98.198	ENSSARG00000005537	LSM12	100	99.346	Sorex_araneus
ENSDORG00000016381	Lsm12	99	94.819	ENSSPUG00000011984	LSM12	99	94.819	Sphenodon_punctatus
ENSDORG00000016381	Lsm12	100	85.714	ENSSPAG00000017058	lsm12b	100	85.714	Stegastes_partitus
ENSDORG00000016381	Lsm12	100	100.000	ENSSSCG00000032394	LSM12	100	100.000	Sus_scrofa
ENSDORG00000016381	Lsm12	100	84.545	ENSTRUG00000007121	lsm12b	100	84.184	Takifugu_rubripes
ENSDORG00000016381	Lsm12	100	84.694	ENSTNIG00000014436	lsm12b	100	84.694	Tetraodon_nigroviridis
ENSDORG00000016381	Lsm12	100	99.487	ENSTBEG00000012523	-	100	99.487	Tupaia_belangeri
ENSDORG00000016381	Lsm12	100	96.410	ENSTBEG00000012392	-	100	96.410	Tupaia_belangeri
ENSDORG00000016381	Lsm12	100	100.000	ENSTTRG00000010433	LSM12	100	100.000	Tursiops_truncatus
ENSDORG00000016381	Lsm12	100	100.000	ENSUAMG00000006313	LSM12	100	100.000	Ursus_americanus
ENSDORG00000016381	Lsm12	81	98.198	ENSUMAG00000012987	LSM12	90	96.835	Ursus_maritimus
ENSDORG00000016381	Lsm12	100	94.359	ENSVPAG00000011145	LSM12	100	94.359	Vicugna_pacos
ENSDORG00000016381	Lsm12	100	100.000	ENSVVUG00000017581	LSM12	100	100.000	Vulpes_vulpes
ENSDORG00000016381	Lsm12	80	83.486	ENSXETG00000003371	lsm12	77	65.000	Xenopus_tropicalis
ENSDORG00000016381	Lsm12	100	85.455	ENSXCOG00000003994	lsm12b	100	84.184	Xiphophorus_couchianus
ENSDORG00000016381	Lsm12	100	85.455	ENSXMAG00000020950	lsm12b	100	84.184	Xiphophorus_maculatus