EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000016614 (Gene tree)
Gene ID: -
Gene Symbol: Smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 271438 bases
Position: chrKN672377.1:7501881-7773318
Accession: 105985837
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000021446	EST1	PF10374.9	7.4e-09	1	1
ENSDORP00000015631	EST1	PF10374.9	1.1e-08	1	1
ENSDORP00000015631	EST1_DNA_bind	PF10373.9	2.2e-44	1	1
ENSDORP00000021446	EST1_DNA_bind	PF10373.9	3.1e-44	1	1
ENSDORP00000023533	EST1_DNA_bind	PF10373.9	2.2e-10	1	1
ENSDORP00000015631	PIN_4	PF13638.6	8.4e-21	1	1
ENSDORP00000021446	PIN_4	PF13638.6	8.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000027083	-	4236	-	ENSDORP00000021446	1411 (aa)	-	UPI000BAD03CC
ENSDORT00000016615	-	4068	XM_013016534	ENSDORP00000015631	1355 (aa)	XP_012871988	UPI000BAD1A00
ENSDORT00000035110	-	711	-	ENSDORP00000023533	237 (aa)	-	UPI000BAD0F87

Gene Model

Click here to download ENSDORG00000016614's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000016614's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000016614	Smg6	94	98.198	ENSG00000070366	SMG6	100	99.187	Homo_sapiens
ENSDORG00000016614	Smg6	92	56.769	ENSAPOG00000019448	smg6	74	51.132	Acanthochromis_polyacanthus
ENSDORG00000016614	Smg6	94	97.297	ENSAMEG00000007632	SMG6	100	89.053	Ailuropoda_melanoleuca
ENSDORG00000016614	Smg6	84	62.927	ENSACIG00000012997	smg6	78	51.479	Amphilophus_citrinellus
ENSDORG00000016614	Smg6	92	56.332	ENSAOCG00000002630	smg6	74	51.054	Amphiprion_ocellaris
ENSDORG00000016614	Smg6	92	56.769	ENSAPEG00000019101	smg6	74	51.210	Amphiprion_percula
ENSDORG00000016614	Smg6	84	60.849	ENSATEG00000006483	smg6	75	50.605	Anabas_testudineus
ENSDORG00000016614	Smg6	86	77.184	ENSACAG00000011783	SMG6	99	54.531	Anolis_carolinensis
ENSDORG00000016614	Smg6	94	98.198	ENSANAG00000035760	SMG6	100	88.772	Aotus_nancymaae
ENSDORG00000016614	Smg6	84	59.242	ENSACLG00000005288	smg6	84	49.297	Astatotilapia_calliptera
ENSDORG00000016614	Smg6	85	60.096	ENSAMXG00000017326	smg6	99	46.953	Astyanax_mexicanus
ENSDORG00000016614	Smg6	94	98.198	ENSBTAG00000000267	SMG6	100	88.842	Bos_taurus
ENSDORG00000016614	Smg6	94	98.198	ENSCJAG00000001820	SMG6	100	88.772	Callithrix_jacchus
ENSDORG00000016614	Smg6	94	96.847	ENSCAFG00000019260	SMG6	100	88.912	Canis_familiaris
ENSDORG00000016614	Smg6	94	96.847	ENSCAFG00020009770	SMG6	100	88.912	Canis_lupus_dingo
ENSDORG00000016614	Smg6	94	98.649	ENSCHIG00000021998	SMG6	100	88.632	Capra_hircus
ENSDORG00000016614	Smg6	94	97.748	ENSTSYG00000003406	SMG6	100	98.239	Carlito_syrichta
ENSDORG00000016614	Smg6	90	84.309	ENSCAPG00000016197	SMG6	99	83.372	Cavia_aperea
ENSDORG00000016614	Smg6	100	97.192	ENSCPOG00000014878	SMG6	96	97.192	Cavia_porcellus
ENSDORG00000016614	Smg6	94	98.198	ENSCCAG00000035801	SMG6	100	88.772	Cebus_capucinus
ENSDORG00000016614	Smg6	100	88.632	ENSCATG00000031956	SMG6	100	88.632	Cercocebus_atys
ENSDORG00000016614	Smg6	94	98.198	ENSCLAG00000006748	SMG6	95	96.476	Chinchilla_lanigera
ENSDORG00000016614	Smg6	94	97.748	ENSCSAG00000013800	SMG6	100	89.193	Chlorocebus_sabaeus
ENSDORG00000016614	Smg6	55	99.010	ENSCHOG00000005024	-	68	99.010	Choloepus_hoffmanni
ENSDORG00000016614	Smg6	94	84.234	ENSCPBG00000020369	SMG6	100	69.508	Chrysemys_picta_bellii
ENSDORG00000016614	Smg6	68	35.260	ENSCING00000010099	-	99	35.115	Ciona_intestinalis
ENSDORG00000016614	Smg6	94	97.297	ENSCANG00000031764	SMG6	100	97.652	Colobus_angolensis_palliatus
ENSDORG00000016614	Smg6	62	78.916	ENSCGRG00001019595	Smg6	99	84.928	Cricetulus_griseus_chok1gshd
ENSDORG00000016614	Smg6	98	83.552	ENSCGRG00000007782	Smg6	100	83.697	Cricetulus_griseus_crigri
ENSDORG00000016614	Smg6	100	49.246	ENSCSEG00000012757	smg6	94	47.037	Cynoglossus_semilaevis
ENSDORG00000016614	Smg6	84	60.190	ENSCVAG00000012789	smg6	86	50.351	Cyprinodon_variegatus
ENSDORG00000016614	Smg6	99	62.406	ENSDARG00000100481	smg6	100	50.513	Danio_rerio
ENSDORG00000016614	Smg6	94	97.748	ENSDNOG00000048283	SMG6	100	88.912	Dasypus_novemcinctus
ENSDORG00000016614	Smg6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSDORG00000016614	Smg6	82	53.030	ENSEBUG00000005059	smg6	72	55.275	Eptatretus_burgeri
ENSDORG00000016614	Smg6	94	97.748	ENSEASG00005009318	SMG6	99	89.389	Equus_asinus_asinus
ENSDORG00000016614	Smg6	94	97.297	ENSECAG00000006519	SMG6	99	89.108	Equus_caballus
ENSDORG00000016614	Smg6	100	87.812	ENSEEUG00000003493	SMG6	96	87.812	Erinaceus_europaeus
ENSDORG00000016614	Smg6	85	62.381	ENSELUG00000005934	smg6	67	52.541	Esox_lucius
ENSDORG00000016614	Smg6	94	98.198	ENSFCAG00000028817	SMG6	100	89.895	Felis_catus
ENSDORG00000016614	Smg6	94	83.333	ENSFALG00000006538	SMG6	100	68.249	Ficedula_albicollis
ENSDORG00000016614	Smg6	94	96.847	ENSFDAG00000015106	SMG6	96	94.323	Fukomys_damarensis
ENSDORG00000016614	Smg6	84	57.346	ENSFHEG00000013282	smg6	75	50.155	Fundulus_heteroclitus
ENSDORG00000016614	Smg6	84	57.143	ENSGMOG00000019077	smg6	67	54.479	Gadus_morhua
ENSDORG00000016614	Smg6	100	84.891	ENSGALG00000003108	SMG6	98	68.141	Gallus_gallus
ENSDORG00000016614	Smg6	85	58.216	ENSGAFG00000000379	smg6	74	50.468	Gambusia_affinis
ENSDORG00000016614	Smg6	97	53.086	ENSGACG00000020521	smg6	100	50.074	Gasterosteus_aculeatus
ENSDORG00000016614	Smg6	94	83.333	ENSGAGG00000025617	SMG6	100	69.073	Gopherus_agassizii
ENSDORG00000016614	Smg6	94	97.748	ENSGGOG00000017156	SMG6	100	89.333	Gorilla_gorilla
ENSDORG00000016614	Smg6	84	59.242	ENSHBUG00000021311	smg6	78	49.264	Haplochromis_burtoni
ENSDORG00000016614	Smg6	94	97.748	ENSHGLG00000012882	SMG6	96	95.197	Heterocephalus_glaber_female
ENSDORG00000016614	Smg6	94	97.748	ENSHGLG00100017815	SMG6	96	95.197	Heterocephalus_glaber_male
ENSDORG00000016614	Smg6	86	61.111	ENSHCOG00000008761	smg6	97	49.515	Hippocampus_comes
ENSDORG00000016614	Smg6	97	62.179	ENSIPUG00000012493	smg6	90	46.487	Ictalurus_punctatus
ENSDORG00000016614	Smg6	100	99.376	ENSSTOG00000028127	SMG6	96	99.376	Ictidomys_tridecemlineatus
ENSDORG00000016614	Smg6	69	96.341	ENSJJAG00000015367	Smg6	95	84.052	Jaculus_jaculus
ENSDORG00000016614	Smg6	92	56.087	ENSKMAG00000000279	smg6	79	49.629	Kryptolebias_marmoratus
ENSDORG00000016614	Smg6	81	59.024	ENSLBEG00000002184	smg6	75	49.545	Labrus_bergylta
ENSDORG00000016614	Smg6	53	100.000	ENSLACG00000000806	-	90	100.000	Latimeria_chalumnae
ENSDORG00000016614	Smg6	94	81.081	ENSLACG00000003276	SMG6	100	80.430	Latimeria_chalumnae
ENSDORG00000016614	Smg6	97	65.401	ENSLOCG00000006448	smg6	99	51.915	Lepisosteus_oculatus
ENSDORG00000016614	Smg6	94	97.748	ENSLAFG00000001261	SMG6	100	88.140	Loxodonta_africana
ENSDORG00000016614	Smg6	94	97.297	ENSMFAG00000003394	SMG6	100	89.193	Macaca_fascicularis
ENSDORG00000016614	Smg6	94	97.297	ENSMMUG00000023161	SMG6	100	89.123	Macaca_mulatta
ENSDORG00000016614	Smg6	94	97.297	ENSMNEG00000044592	SMG6	100	84.384	Macaca_nemestrina
ENSDORG00000016614	Smg6	94	97.297	ENSMLEG00000029353	SMG6	100	97.744	Mandrillus_leucophaeus
ENSDORG00000016614	Smg6	84	61.033	ENSMAMG00000020119	smg6	83	50.709	Mastacembelus_armatus
ENSDORG00000016614	Smg6	84	59.242	ENSMZEG00005024736	smg6	78	49.741	Maylandia_zebra
ENSDORG00000016614	Smg6	72	80.657	ENSMGAG00000005401	-	93	80.657	Meleagris_gallopavo
ENSDORG00000016614	Smg6	52	90.244	ENSMGAG00000017200	-	100	85.831	Meleagris_gallopavo
ENSDORG00000016614	Smg6	94	96.847	ENSMAUG00000017203	-	96	96.847	Mesocricetus_auratus
ENSDORG00000016614	Smg6	94	99.550	ENSMICG00000012913	SMG6	100	90.386	Microcebus_murinus
ENSDORG00000016614	Smg6	94	97.297	ENSMOCG00000019924	-	99	93.506	Microtus_ochrogaster
ENSDORG00000016614	Smg6	99	60.916	ENSMMOG00000010883	smg6	95	62.037	Mola_mola
ENSDORG00000016614	Smg6	100	95.788	ENSMODG00000010622	SMG6	96	95.788	Monodelphis_domestica
ENSDORG00000016614	Smg6	73	49.432	ENSMODG00000024410	-	99	41.879	Monodelphis_domestica
ENSDORG00000016614	Smg6	73	50.000	ENSMODG00000024460	-	99	42.270	Monodelphis_domestica
ENSDORG00000016614	Smg6	73	49.432	ENSMODG00000024463	-	99	42.270	Monodelphis_domestica
ENSDORG00000016614	Smg6	81	46.667	ENSMODG00000024395	-	99	40.900	Monodelphis_domestica
ENSDORG00000016614	Smg6	84	59.716	ENSMALG00000001106	smg6	73	51.345	Monopterus_albus
ENSDORG00000016614	Smg6	94	97.297	MGP_CAROLIEiJ_G0016729	Smg6	93	97.297	Mus_caroli
ENSDORG00000016614	Smg6	94	97.297	ENSMUSG00000038290	Smg6	95	95.575	Mus_musculus
ENSDORG00000016614	Smg6	94	97.297	MGP_PahariEiJ_G0017866	Smg6	95	95.575	Mus_pahari
ENSDORG00000016614	Smg6	94	97.297	MGP_SPRETEiJ_G0017572	Smg6	96	94.737	Mus_spretus
ENSDORG00000016614	Smg6	94	97.748	ENSMPUG00000013046	SMG6	100	89.123	Mustela_putorius_furo
ENSDORG00000016614	Smg6	94	97.748	ENSMLUG00000005739	SMG6	100	88.982	Myotis_lucifugus
ENSDORG00000016614	Smg6	94	96.847	ENSNGAG00000007287	Smg6	94	96.847	Nannospalax_galili
ENSDORG00000016614	Smg6	87	58.754	ENSNBRG00000009511	smg6	81	59.050	Neolamprologus_brichardi
ENSDORG00000016614	Smg6	94	97.748	ENSNLEG00000017171	SMG6	100	98.239	Nomascus_leucogenys
ENSDORG00000016614	Smg6	98	94.384	ENSMEUG00000015804	SMG6	96	94.384	Notamacropus_eugenii
ENSDORG00000016614	Smg6	69	94.479	ENSOPRG00000000579	SMG6	74	98.421	Ochotona_princeps
ENSDORG00000016614	Smg6	100	92.127	ENSODEG00000008038	SMG6	100	92.127	Octodon_degus
ENSDORG00000016614	Smg6	100	47.695	ENSONIG00000005594	smg6	100	48.269	Oreochromis_niloticus
ENSDORG00000016614	Smg6	94	97.309	ENSOCUG00000013018	SMG6	100	88.858	Oryctolagus_cuniculus
ENSDORG00000016614	Smg6	83	58.852	ENSORLG00000003317	smg6	74	50.938	Oryzias_latipes
ENSDORG00000016614	Smg6	83	58.373	ENSORLG00020015343	smg6	74	50.587	Oryzias_latipes_hni
ENSDORG00000016614	Smg6	83	58.852	ENSORLG00015020454	smg6	74	50.938	Oryzias_latipes_hsok
ENSDORG00000016614	Smg6	83	58.852	ENSOMEG00000010838	smg6	75	50.275	Oryzias_melastigma
ENSDORG00000016614	Smg6	94	99.099	ENSOGAG00000004483	SMG6	100	89.481	Otolemur_garnettii
ENSDORG00000016614	Smg6	94	98.649	ENSOARG00000015076	SMG6	100	88.497	Ovis_aries
ENSDORG00000016614	Smg6	94	98.198	ENSPPAG00000043296	SMG6	100	89.193	Pan_paniscus
ENSDORG00000016614	Smg6	94	98.198	ENSPPRG00000014581	SMG6	100	89.965	Panthera_pardus
ENSDORG00000016614	Smg6	94	98.198	ENSPTIG00000008925	SMG6	100	99.217	Panthera_tigris_altaica
ENSDORG00000016614	Smg6	94	98.198	ENSPTRG00000008544	SMG6	100	98.434	Pan_troglodytes
ENSDORG00000016614	Smg6	94	97.297	ENSPANG00000024588	SMG6	100	89.263	Papio_anubis
ENSDORG00000016614	Smg6	94	80.631	ENSPSIG00000006660	SMG6	92	82.711	Pelodiscus_sinensis
ENSDORG00000016614	Smg6	92	58.790	ENSPMGG00000000844	smg6	98	58.790	Periophthalmus_magnuspinnatus
ENSDORG00000016614	Smg6	94	97.748	ENSPEMG00000020707	Smg6	95	97.748	Peromyscus_maniculatus_bairdii
ENSDORG00000016614	Smg6	100	48.032	ENSPFOG00000012035	smg6	100	48.292	Poecilia_formosa
ENSDORG00000016614	Smg6	83	59.615	ENSPLAG00000017660	smg6	74	50.667	Poecilia_latipinna
ENSDORG00000016614	Smg6	87	58.371	ENSPMEG00000000258	smg6	74	50.980	Poecilia_mexicana
ENSDORG00000016614	Smg6	87	57.919	ENSPREG00000010066	smg6	74	50.665	Poecilia_reticulata
ENSDORG00000016614	Smg6	100	85.273	ENSPPYG00000007790	SMG6	100	85.273	Pongo_abelii
ENSDORG00000016614	Smg6	100	84.211	ENSPCAG00000000552	SMG6	100	84.211	Procavia_capensis
ENSDORG00000016614	Smg6	94	99.099	ENSPCOG00000020925	SMG6	100	90.246	Propithecus_coquereli
ENSDORG00000016614	Smg6	94	96.847	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSDORG00000016614	Smg6	88	60.930	ENSPNYG00000024151	smg6	82	59.050	Pundamilia_nyererei
ENSDORG00000016614	Smg6	87	59.817	ENSPNAG00000015480	smg6	87	63.016	Pygocentrus_nattereri
ENSDORG00000016614	Smg6	94	96.847	ENSRNOG00000003041	Smg6	100	89.404	Rattus_norvegicus
ENSDORG00000016614	Smg6	94	97.297	ENSRBIG00000024746	SMG6	100	88.912	Rhinopithecus_bieti
ENSDORG00000016614	Smg6	94	97.297	ENSRROG00000030423	SMG6	100	97.260	Rhinopithecus_roxellana
ENSDORG00000016614	Smg6	94	98.198	ENSSBOG00000022518	SMG6	100	87.158	Saimiri_boliviensis_boliviensis
ENSDORG00000016614	Smg6	94	92.793	ENSSHAG00000010045	SMG6	98	81.987	Sarcophilus_harrisii
ENSDORG00000016614	Smg6	88	42.723	ENSSHAG00000000380	-	99	39.526	Sarcophilus_harrisii
ENSDORG00000016614	Smg6	92	60.944	ENSSFOG00015005436	smg6	70	53.260	Scleropages_formosus
ENSDORG00000016614	Smg6	88	59.009	ENSSMAG00000019777	smg6	73	50.659	Scophthalmus_maximus
ENSDORG00000016614	Smg6	84	59.434	ENSSDUG00000016412	smg6	77	50.150	Seriola_dumerili
ENSDORG00000016614	Smg6	84	59.434	ENSSLDG00000020747	smg6	80	48.988	Seriola_lalandi_dorsalis
ENSDORG00000016614	Smg6	99	82.609	ENSSPUG00000007152	SMG6	99	66.690	Sphenodon_punctatus
ENSDORG00000016614	Smg6	92	57.018	ENSSPAG00000015633	smg6	74	51.288	Stegastes_partitus
ENSDORG00000016614	Smg6	94	97.748	ENSSSCG00000017826	SMG6	100	88.710	Sus_scrofa
ENSDORG00000016614	Smg6	94	85.135	ENSTGUG00000005836	SMG6	100	68.693	Taeniopygia_guttata
ENSDORG00000016614	Smg6	100	59.613	ENSTRUG00000000358	smg6	100	45.232	Takifugu_rubripes
ENSDORG00000016614	Smg6	92	57.269	ENSTNIG00000016164	smg6	100	47.528	Tetraodon_nigroviridis
ENSDORG00000016614	Smg6	94	98.529	ENSTBEG00000011424	SMG6	100	84.491	Tupaia_belangeri
ENSDORG00000016614	Smg6	94	96.847	ENSTTRG00000001175	SMG6	89	92.200	Tursiops_truncatus
ENSDORG00000016614	Smg6	94	97.297	ENSUAMG00000025152	SMG6	100	89.356	Ursus_americanus
ENSDORG00000016614	Smg6	94	97.297	ENSUMAG00000009306	SMG6	100	89.576	Ursus_maritimus
ENSDORG00000016614	Smg6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSDORG00000016614	Smg6	94	96.847	ENSVVUG00000021727	SMG6	100	88.772	Vulpes_vulpes
ENSDORG00000016614	Smg6	98	56.390	ENSXETG00000023799	SMG6	100	56.434	Xenopus_tropicalis
ENSDORG00000016614	Smg6	83	61.765	ENSXCOG00000009867	smg6	74	49.561	Xiphophorus_couchianus
ENSDORG00000016614	Smg6	83	60.096	ENSXMAG00000010321	smg6	74	50.857	Xiphophorus_maculatus