EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000016717 (Gene tree)
Gene ID: 105980782
Gene Symbol: Rpusd4
Alias: -
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 11218 bases
Position: chrKN672356.1:9985767-9996984
Accession: 105980782
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000015725	PseudoU_synth_2	PF00849.22	1.6e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000016717	-	1685	XM_013009696	ENSDORP00000015725	377 (aa)	XP_012865150	A0A1S3EMH8

Gene Model

Click here to download ENSDORG00000016717's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000016717's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000016717	Rpusd4	68	30.824	ENSDORG00000026827	Rpusd3	92	30.824

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000016717	Rpusd4	100	80.371	ENSG00000165526	RPUSD4	100	80.371	Homo_sapiens
ENSDORG00000016717	Rpusd4	83	51.250	ENSAPOG00000011024	rpusd4	82	50.453	Acanthochromis_polyacanthus
ENSDORG00000016717	Rpusd4	62	84.685	ENSAMEG00000005953	-	100	84.685	Ailuropoda_melanoleuca
ENSDORG00000016717	Rpusd4	100	82.759	ENSAMEG00000000127	-	100	82.759	Ailuropoda_melanoleuca
ENSDORG00000016717	Rpusd4	88	47.633	ENSACIG00000003533	rpusd4	90	49.511	Amphilophus_citrinellus
ENSDORG00000016717	Rpusd4	88	50.147	ENSAOCG00000015409	rpusd4	83	49.853	Amphiprion_ocellaris
ENSDORG00000016717	Rpusd4	88	50.000	ENSAPEG00000018935	rpusd4	87	48.876	Amphiprion_percula
ENSDORG00000016717	Rpusd4	87	51.051	ENSATEG00000008059	rpusd4	82	50.450	Anabas_testudineus
ENSDORG00000016717	Rpusd4	73	61.011	ENSAPLG00000013250	RPUSD4	99	59.727	Anas_platyrhynchos
ENSDORG00000016717	Rpusd4	97	59.239	ENSACAG00000000189	RPUSD4	100	59.239	Anolis_carolinensis
ENSDORG00000016717	Rpusd4	98	81.671	ENSANAG00000024050	RPUSD4	99	81.671	Aotus_nancymaae
ENSDORG00000016717	Rpusd4	86	50.760	ENSACLG00000020996	rpusd4	84	50.760	Astatotilapia_calliptera
ENSDORG00000016717	Rpusd4	96	45.799	ENSAMXG00000031479	rpusd4	95	45.528	Astyanax_mexicanus
ENSDORG00000016717	Rpusd4	100	78.042	ENSBTAG00000020900	RPUSD4	100	77.778	Bos_taurus
ENSDORG00000016717	Rpusd4	98	81.622	ENSCJAG00000042850	RPUSD4	93	81.622	Callithrix_jacchus
ENSDORG00000016717	Rpusd4	100	81.217	ENSCAFG00000010488	RPUSD4	100	81.217	Canis_familiaris
ENSDORG00000016717	Rpusd4	100	81.217	ENSCAFG00020010621	RPUSD4	100	81.217	Canis_lupus_dingo
ENSDORG00000016717	Rpusd4	100	78.364	ENSCHIG00000009975	RPUSD4	100	78.100	Capra_hircus
ENSDORG00000016717	Rpusd4	100	83.024	ENSTSYG00000008456	RPUSD4	100	83.024	Carlito_syrichta
ENSDORG00000016717	Rpusd4	67	78.968	ENSCAPG00000006040	RPUSD4	98	78.968	Cavia_aperea
ENSDORG00000016717	Rpusd4	98	78.706	ENSCPOG00000014971	RPUSD4	98	78.706	Cavia_porcellus
ENSDORG00000016717	Rpusd4	98	83.019	ENSCCAG00000027838	RPUSD4	99	83.019	Cebus_capucinus
ENSDORG00000016717	Rpusd4	100	80.371	ENSCATG00000041570	RPUSD4	100	80.371	Cercocebus_atys
ENSDORG00000016717	Rpusd4	98	81.402	ENSCLAG00000016553	RPUSD4	98	81.402	Chinchilla_lanigera
ENSDORG00000016717	Rpusd4	100	80.106	ENSCSAG00000002274	RPUSD4	100	80.106	Chlorocebus_sabaeus
ENSDORG00000016717	Rpusd4	75	84.099	ENSCHOG00000010249	RPUSD4	100	84.099	Choloepus_hoffmanni
ENSDORG00000016717	Rpusd4	75	66.434	ENSCPBG00000011175	RPUSD4	99	66.434	Chrysemys_picta_bellii
ENSDORG00000016717	Rpusd4	71	42.960	ENSCSAVG00000000872	-	54	42.960	Ciona_savignyi
ENSDORG00000016717	Rpusd4	100	78.515	ENSCANG00000039684	RPUSD4	100	78.515	Colobus_angolensis_palliatus
ENSDORG00000016717	Rpusd4	100	80.902	ENSCGRG00001024141	Rpusd4	100	80.902	Cricetulus_griseus_chok1gshd
ENSDORG00000016717	Rpusd4	100	80.902	ENSCGRG00000014415	Rpusd4	100	80.902	Cricetulus_griseus_crigri
ENSDORG00000016717	Rpusd4	51	44.103	ENSCSEG00000006462	-	85	44.103	Cynoglossus_semilaevis
ENSDORG00000016717	Rpusd4	88	49.852	ENSCVAG00000000392	rpusd4	95	49.852	Cyprinodon_variegatus
ENSDORG00000016717	Rpusd4	88	49.555	ENSCVAG00000008761	rpusd4	86	49.555	Cyprinodon_variegatus
ENSDORG00000016717	Rpusd4	93	46.875	ENSDARG00000012674	rpusd4	98	46.875	Danio_rerio
ENSDORG00000016717	Rpusd4	100	76.393	ENSDNOG00000020026	RPUSD4	100	76.393	Dasypus_novemcinctus
ENSDORG00000016717	Rpusd4	98	80.978	ENSETEG00000013953	RPUSD4	98	80.978	Echinops_telfairi
ENSDORG00000016717	Rpusd4	100	82.759	ENSEASG00005022982	RPUSD4	100	82.759	Equus_asinus_asinus
ENSDORG00000016717	Rpusd4	100	82.493	ENSECAG00000000557	RPUSD4	100	82.493	Equus_caballus
ENSDORG00000016717	Rpusd4	82	80.526	ENSEEUG00000014036	RPUSD4	82	80.526	Erinaceus_europaeus
ENSDORG00000016717	Rpusd4	93	51.491	ENSELUG00000008075	rpusd4	80	56.129	Esox_lucius
ENSDORG00000016717	Rpusd4	100	82.493	ENSFCAG00000029789	RPUSD4	100	82.493	Felis_catus
ENSDORG00000016717	Rpusd4	88	57.612	ENSFALG00000005171	RPUSD4	99	57.612	Ficedula_albicollis
ENSDORG00000016717	Rpusd4	100	81.167	ENSFDAG00000014307	RPUSD4	100	81.167	Fukomys_damarensis
ENSDORG00000016717	Rpusd4	86	49.547	ENSFHEG00000004329	rpusd4	85	49.547	Fundulus_heteroclitus
ENSDORG00000016717	Rpusd4	85	50.920	ENSGMOG00000017726	rpusd4	96	49.387	Gadus_morhua
ENSDORG00000016717	Rpusd4	86	59.215	ENSGALG00000024326	RPUSD4	94	59.403	Gallus_gallus
ENSDORG00000016717	Rpusd4	89	46.957	ENSGAFG00000021559	rpusd4	87	46.377	Gambusia_affinis
ENSDORG00000016717	Rpusd4	77	51.515	ENSGACG00000001657	rpusd4	99	49.310	Gasterosteus_aculeatus
ENSDORG00000016717	Rpusd4	89	63.393	ENSGAGG00000000132	RPUSD4	93	63.393	Gopherus_agassizii
ENSDORG00000016717	Rpusd4	100	80.106	ENSGGOG00000016494	RPUSD4	100	80.106	Gorilla_gorilla
ENSDORG00000016717	Rpusd4	86	50.760	ENSHBUG00000022838	rpusd4	84	50.760	Haplochromis_burtoni
ENSDORG00000016717	Rpusd4	100	81.963	ENSHGLG00000002285	RPUSD4	100	81.963	Heterocephalus_glaber_female
ENSDORG00000016717	Rpusd4	100	81.963	ENSHGLG00100006385	RPUSD4	100	81.963	Heterocephalus_glaber_male
ENSDORG00000016717	Rpusd4	86	50.305	ENSHCOG00000006612	rpusd4	83	50.305	Hippocampus_comes
ENSDORG00000016717	Rpusd4	86	51.220	ENSIPUG00000023879	rusd4	85	51.220	Ictalurus_punctatus
ENSDORG00000016717	Rpusd4	97	81.593	ENSSTOG00000025280	RPUSD4	100	81.593	Ictidomys_tridecemlineatus
ENSDORG00000016717	Rpusd4	98	82.210	ENSJJAG00000018673	Rpusd4	99	82.210	Jaculus_jaculus
ENSDORG00000016717	Rpusd4	89	51.312	ENSKMAG00000021805	rpusd4	88	51.312	Kryptolebias_marmoratus
ENSDORG00000016717	Rpusd4	92	48.159	ENSLBEG00000020394	rpusd4	98	48.159	Labrus_bergylta
ENSDORG00000016717	Rpusd4	85	60.736	ENSLACG00000011028	RPUSD4	85	59.524	Latimeria_chalumnae
ENSDORG00000016717	Rpusd4	90	46.647	ENSLOCG00000003124	rpusd4	90	46.356	Lepisosteus_oculatus
ENSDORG00000016717	Rpusd4	100	81.432	ENSLAFG00000005211	RPUSD4	100	81.432	Loxodonta_africana
ENSDORG00000016717	Rpusd4	100	80.371	ENSMFAG00000039513	RPUSD4	100	80.371	Macaca_fascicularis
ENSDORG00000016717	Rpusd4	100	80.106	ENSMMUG00000007933	RPUSD4	100	80.106	Macaca_mulatta
ENSDORG00000016717	Rpusd4	100	80.106	ENSMNEG00000027414	RPUSD4	100	80.106	Macaca_nemestrina
ENSDORG00000016717	Rpusd4	100	80.106	ENSMLEG00000042461	RPUSD4	100	80.106	Mandrillus_leucophaeus
ENSDORG00000016717	Rpusd4	90	46.839	ENSMAMG00000023839	rpusd4	90	46.839	Mastacembelus_armatus
ENSDORG00000016717	Rpusd4	86	50.760	ENSMZEG00005011999	rpusd4	84	50.760	Maylandia_zebra
ENSDORG00000016717	Rpusd4	83	59.683	ENSMGAG00000000840	RPUSD4	98	60.188	Meleagris_gallopavo
ENSDORG00000016717	Rpusd4	100	77.454	ENSMAUG00000010280	Rpusd4	100	77.454	Mesocricetus_auratus
ENSDORG00000016717	Rpusd4	100	80.902	ENSMICG00000015979	RPUSD4	95	85.987	Microcebus_murinus
ENSDORG00000016717	Rpusd4	98	78.167	ENSMOCG00000000661	Rpusd4	98	78.167	Microtus_ochrogaster
ENSDORG00000016717	Rpusd4	78	53.512	ENSMMOG00000021731	rpusd4	88	53.512	Mola_mola
ENSDORG00000016717	Rpusd4	92	72.334	ENSMODG00000004521	RPUSD4	89	72.334	Monodelphis_domestica
ENSDORG00000016717	Rpusd4	80	50.489	ENSMALG00000005839	rpusd4	92	50.489	Monopterus_albus
ENSDORG00000016717	Rpusd4	100	80.106	MGP_CAROLIEiJ_G0031954	Rpusd4	100	80.106	Mus_caroli
ENSDORG00000016717	Rpusd4	98	80.593	ENSMUSG00000032044	Rpusd4	98	80.593	Mus_musculus
ENSDORG00000016717	Rpusd4	100	79.310	MGP_PahariEiJ_G0014819	Rpusd4	100	79.310	Mus_pahari
ENSDORG00000016717	Rpusd4	98	80.863	MGP_SPRETEiJ_G0033078	Rpusd4	98	80.863	Mus_spretus
ENSDORG00000016717	Rpusd4	99	80.533	ENSMPUG00000006608	RPUSD4	99	80.533	Mustela_putorius_furo
ENSDORG00000016717	Rpusd4	97	80.548	ENSMLUG00000017328	-	96	80.548	Myotis_lucifugus
ENSDORG00000016717	Rpusd4	67	83.465	ENSMLUG00000029348	-	100	83.465	Myotis_lucifugus
ENSDORG00000016717	Rpusd4	99	81.501	ENSNGAG00000020847	Rpusd4	99	81.501	Nannospalax_galili
ENSDORG00000016717	Rpusd4	86	51.064	ENSNBRG00000005207	rpusd4	95	51.064	Neolamprologus_brichardi
ENSDORG00000016717	Rpusd4	100	80.371	ENSNLEG00000007465	RPUSD4	100	80.371	Nomascus_leucogenys
ENSDORG00000016717	Rpusd4	98	68.649	ENSMEUG00000004370	RPUSD4	99	68.649	Notamacropus_eugenii
ENSDORG00000016717	Rpusd4	55	81.507	ENSOPRG00000013141	-	75	81.507	Ochotona_princeps
ENSDORG00000016717	Rpusd4	98	80.863	ENSODEG00000004577	RPUSD4	98	80.863	Octodon_degus
ENSDORG00000016717	Rpusd4	93	49.041	ENSONIG00000018879	rpusd4	98	49.041	Oreochromis_niloticus
ENSDORG00000016717	Rpusd4	77	68.707	ENSOANG00000007247	RPUSD4	95	68.350	Ornithorhynchus_anatinus
ENSDORG00000016717	Rpusd4	100	79.101	ENSOCUG00000017039	RPUSD4	100	79.101	Oryctolagus_cuniculus
ENSDORG00000016717	Rpusd4	90	46.667	ENSORLG00000002750	rpusd4	84	49.186	Oryzias_latipes
ENSDORG00000016717	Rpusd4	88	46.746	ENSORLG00020002044	rpusd4	76	48.860	Oryzias_latipes_hni
ENSDORG00000016717	Rpusd4	88	46.746	ENSORLG00015020034	rpusd4	76	49.186	Oryzias_latipes_hsok
ENSDORG00000016717	Rpusd4	86	50.152	ENSOMEG00000004861	rpusd4	72	53.425	Oryzias_melastigma
ENSDORG00000016717	Rpusd4	100	80.159	ENSOGAG00000008922	RPUSD4	100	80.159	Otolemur_garnettii
ENSDORG00000016717	Rpusd4	98	78.649	ENSOARG00000012238	RPUSD4	99	77.249	Ovis_aries
ENSDORG00000016717	Rpusd4	100	80.637	ENSPPAG00000042883	RPUSD4	93	80.637	Pan_paniscus
ENSDORG00000016717	Rpusd4	100	82.493	ENSPPRG00000003081	RPUSD4	100	82.493	Panthera_pardus
ENSDORG00000016717	Rpusd4	100	82.493	ENSPTIG00000012059	RPUSD4	100	82.493	Panthera_tigris_altaica
ENSDORG00000016717	Rpusd4	100	80.371	ENSPTRG00000004454	RPUSD4	100	80.371	Pan_troglodytes
ENSDORG00000016717	Rpusd4	100	79.841	ENSPANG00000015040	RPUSD4	100	79.841	Papio_anubis
ENSDORG00000016717	Rpusd4	88	55.689	ENSPKIG00000023986	rpusd4	85	55.689	Paramormyrops_kingsleyae
ENSDORG00000016717	Rpusd4	79	65.667	ENSPSIG00000014268	RPUSD4	95	65.667	Pelodiscus_sinensis
ENSDORG00000016717	Rpusd4	86	49.695	ENSPMGG00000002806	rpusd4	91	49.085	Periophthalmus_magnuspinnatus
ENSDORG00000016717	Rpusd4	100	74.536	ENSPEMG00000000278	Rpusd4	100	74.536	Peromyscus_maniculatus_bairdii
ENSDORG00000016717	Rpusd4	80	45.373	ENSPMAG00000008183	rpusd4	97	43.881	Petromyzon_marinus
ENSDORG00000016717	Rpusd4	97	71.154	ENSPCIG00000010212	RPUSD4	100	71.154	Phascolarctos_cinereus
ENSDORG00000016717	Rpusd4	93	47.043	ENSPFOG00000019030	rpusd4	97	46.505	Poecilia_formosa
ENSDORG00000016717	Rpusd4	92	47.945	ENSPLAG00000016848	rpusd4	94	47.027	Poecilia_latipinna
ENSDORG00000016717	Rpusd4	92	47.123	ENSPMEG00000017534	rpusd4	94	46.216	Poecilia_mexicana
ENSDORG00000016717	Rpusd4	90	47.765	ENSPREG00000005689	rpusd4	92	47.207	Poecilia_reticulata
ENSDORG00000016717	Rpusd4	100	81.167	ENSPPYG00000004043	RPUSD4	100	81.167	Pongo_abelii
ENSDORG00000016717	Rpusd4	80	80.435	ENSPCAG00000000753	RPUSD4	81	80.435	Procavia_capensis
ENSDORG00000016717	Rpusd4	98	75.741	ENSPCOG00000020694	RPUSD4	100	75.741	Propithecus_coquereli
ENSDORG00000016717	Rpusd4	100	81.167	ENSPVAG00000000988	RPUSD4	100	81.167	Pteropus_vampyrus
ENSDORG00000016717	Rpusd4	86	49.848	ENSPNYG00000009652	rpusd4	84	49.848	Pundamilia_nyererei
ENSDORG00000016717	Rpusd4	96	47.671	ENSPNAG00000012264	rpusd4	95	47.397	Pygocentrus_nattereri
ENSDORG00000016717	Rpusd4	98	81.132	ENSRNOG00000011567	Rpusd4	98	81.132	Rattus_norvegicus
ENSDORG00000016717	Rpusd4	100	79.576	ENSRBIG00000034842	RPUSD4	100	79.576	Rhinopithecus_bieti
ENSDORG00000016717	Rpusd4	100	79.576	ENSRROG00000039753	RPUSD4	100	79.576	Rhinopithecus_roxellana
ENSDORG00000016717	Rpusd4	98	80.863	ENSSBOG00000030413	RPUSD4	99	80.863	Saimiri_boliviensis_boliviensis
ENSDORG00000016717	Rpusd4	80	76.744	ENSSHAG00000008304	RPUSD4	99	76.744	Sarcophilus_harrisii
ENSDORG00000016717	Rpusd4	89	53.824	ENSSFOG00015006203	rpusd4	92	53.529	Scleropages_formosus
ENSDORG00000016717	Rpusd4	89	49.267	ENSSMAG00000020978	rpusd4	88	49.701	Scophthalmus_maximus
ENSDORG00000016717	Rpusd4	89	46.921	ENSSDUG00000013399	rpusd4	89	46.628	Seriola_dumerili
ENSDORG00000016717	Rpusd4	89	46.628	ENSSLDG00000023507	rpusd4	89	46.628	Seriola_lalandi_dorsalis
ENSDORG00000016717	Rpusd4	89	60.294	ENSSPUG00000001401	RPUSD4	94	61.047	Sphenodon_punctatus
ENSDORG00000016717	Rpusd4	90	51.124	ENSSPAG00000012163	rpusd4	90	50.142	Stegastes_partitus
ENSDORG00000016717	Rpusd4	100	83.289	ENSSSCG00000015233	RPUSD4	100	83.024	Sus_scrofa
ENSDORG00000016717	Rpusd4	79	60.333	ENSTGUG00000000773	RPUSD4	100	60.333	Taeniopygia_guttata
ENSDORG00000016717	Rpusd4	86	50.909	ENSTRUG00000012283	rpusd4	84	50.909	Takifugu_rubripes
ENSDORG00000016717	Rpusd4	86	50.606	ENSTNIG00000014676	rpusd4	84	50.303	Tetraodon_nigroviridis
ENSDORG00000016717	Rpusd4	100	81.167	ENSTTRG00000001555	RPUSD4	100	81.167	Tursiops_truncatus
ENSDORG00000016717	Rpusd4	100	82.228	ENSUMAG00000002219	RPUSD4	100	82.228	Ursus_maritimus
ENSDORG00000016717	Rpusd4	70	81.509	ENSVPAG00000001066	RPUSD4	100	81.509	Vicugna_pacos
ENSDORG00000016717	Rpusd4	100	81.217	ENSVVUG00000020101	RPUSD4	100	81.217	Vulpes_vulpes
ENSDORG00000016717	Rpusd4	93	46.341	ENSXCOG00000004676	rpusd4	94	45.799	Xiphophorus_couchianus
ENSDORG00000016717	Rpusd4	97	45.153	ENSXMAG00000023351	rpusd4	99	44.643	Xiphophorus_maculatus