EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000023607 (Gene tree)
Gene ID: 106000266
Gene Symbol: Rab42
Alias: 9530096D07Rik|Rab42-ps
Full Name: RAB42%2C member RAS oncogene family
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 37627 bases
Position: chrKN672352.1:10318096-10355722
Accession: 106000266
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000023334	MMR_HSR1	PF01926.23	6.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000028588	-	1828	XM_013035513	ENSDORP00000023334	216 (aa)	XP_012890967	UPI000BAD0260

Gene Model

Click here to download ENSDORG00000023607's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000023607's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000023607	Rab42	77	37.714	ENSDORG00000023618	Rab33b	73	37.714
ENSDORG00000023607	Rab42	79	31.609	ENSDORG00000005225	Rab36	51	31.609
ENSDORG00000023607	Rab42	87	38.830	ENSDORG00000025014	Rab2a	86	38.830
ENSDORG00000023607	Rab42	77	39.286	ENSDORG00000001591	Rab13	79	39.286
ENSDORG00000023607	Rab42	100	38.182	ENSDORG00000006304	Rab11b	98	38.182
ENSDORG00000023607	Rab42	81	38.286	ENSDORG00000000972	Rab35	84	38.286
ENSDORG00000023607	Rab42	78	36.686	ENSDORG00000028596	-	79	36.686
ENSDORG00000023607	Rab42	77	35.088	ENSDORG00000024129	Rab33a	70	35.088
ENSDORG00000023607	Rab42	90	32.821	ENSDORG00000006819	Rab5c	88	32.821
ENSDORG00000023607	Rab42	81	32.000	ENSDORG00000029360	-	81	32.000
ENSDORG00000023607	Rab42	83	33.514	ENSDORG00000026441	Rab6b	87	33.514
ENSDORG00000023607	Rab42	81	41.808	ENSDORG00000002511	Rab1b	85	41.808
ENSDORG00000023607	Rab42	81	36.158	ENSDORG00000008920	Rab12	79	35.676
ENSDORG00000023607	Rab42	79	40.936	ENSDORG00000002922	Rab25	78	40.936
ENSDORG00000023607	Rab42	96	37.321	ENSDORG00000010504	-	95	37.321
ENSDORG00000023607	Rab42	74	38.415	ENSDORG00000009342	Rab9	79	38.415
ENSDORG00000023607	Rab42	87	39.894	ENSDORG00000012048	Rab2b	85	39.894
ENSDORG00000023607	Rab42	99	35.780	ENSDORG00000015066	-	99	35.780
ENSDORG00000023607	Rab42	64	33.333	ENSDORG00000028079	Hras	86	30.178
ENSDORG00000023607	Rab42	78	36.686	ENSDORG00000025986	Rab15	77	36.686
ENSDORG00000023607	Rab42	96	37.321	ENSDORG00000028628	-	96	37.321
ENSDORG00000023607	Rab42	80	34.659	ENSDORG00000027671	-	81	34.659
ENSDORG00000023607	Rab42	96	32.692	ENSDORG00000027784	Rab6a	94	32.692
ENSDORG00000023607	Rab42	74	35.625	ENSDORG00000025063	Rab5b	72	35.625
ENSDORG00000023607	Rab42	74	36.875	ENSDORG00000024958	-	72	36.875
ENSDORG00000023607	Rab42	97	38.028	ENSDORG00000023851	Rab14	96	38.028
ENSDORG00000023607	Rab42	87	48.663	ENSDORG00000029496	Rab39b	86	48.663
ENSDORG00000023607	Rab42	84	33.702	ENSDORG00000028344	Rab23	74	33.702
ENSDORG00000023607	Rab42	72	33.333	ENSDORG00000011469	-	96	30.481

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000023607	Rab42	100	76.389	ENSANAG00000035487	-	100	76.389	Aotus_nancymaae
ENSDORG00000023607	Rab42	100	75.000	ENSBTAG00000021525	-	100	75.000	Bos_taurus
ENSDORG00000023607	Rab42	98	59.624	ENSCPBG00000011245	RAB42	99	60.386	Chrysemys_picta_bellii
ENSDORG00000023607	Rab42	100	78.802	ENSCGRG00001019426	Rab42	100	78.802	Cricetulus_griseus_chok1gshd
ENSDORG00000023607	Rab42	100	77.523	ENSFCAG00000037124	-	100	77.523	Felis_catus
ENSDORG00000023607	Rab42	99	58.411	ENSGAGG00000004921	RAB42	100	58.411	Gopherus_agassizii
ENSDORG00000023607	Rab42	100	80.184	ENSSTOG00000000084	-	100	80.184	Ictidomys_tridecemlineatus
ENSDORG00000023607	Rab42	100	79.263	ENSMAUG00000020223	Rab42	100	79.263	Mesocricetus_auratus
ENSDORG00000023607	Rab42	100	77.064	ENSMICG00000029915	-	100	77.273	Microcebus_murinus
ENSDORG00000023607	Rab42	100	77.778	ENSMOCG00000021639	Rab42	100	77.778	Microtus_ochrogaster
ENSDORG00000023607	Rab42	97	64.929	ENSMODG00000023873	-	95	64.929	Monodelphis_domestica
ENSDORG00000023607	Rab42	100	77.273	ENSNGAG00000015676	Rab42	100	77.273	Nannospalax_galili
ENSDORG00000023607	Rab42	100	77.523	ENSOGAG00000006951	-	100	77.523	Otolemur_garnettii
ENSDORG00000023607	Rab42	97	59.809	ENSPSIG00000006831	RAB42	92	59.809	Pelodiscus_sinensis
ENSDORG00000023607	Rab42	100	76.147	ENSPCOG00000008605	-	100	77.064	Propithecus_coquereli
ENSDORG00000023607	Rab42	96	77.885	ENSSARG00000007565	-	100	77.885	Sorex_araneus
ENSDORG00000023607	Rab42	98	59.434	ENSSPUG00000010337	RAB42	98	59.434	Sphenodon_punctatus
ENSDORG00000023607	Rab42	100	76.818	ENSSSCG00000030432	-	100	76.818	Sus_scrofa