EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDORG00000023717 (Gene tree)
Gene ID: -
Gene Symbol: Apobec1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 4713 bases
Position: chrKN672415.1:339357-344069
Accession: 105991095
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000021895	APOBEC_N	PF08210.11	1e-28	1	1
ENSDORP00000021895	APOBEC_C	PF05240.14	1.4e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000029777	-	942	XM_013023663	ENSDORP00000021895	213 (aa)	XP_012879117	UPI000BAD1EF1

Gene Model

Click here to download ENSDORG00000023717's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000023717's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000023717	Apobec1	100	65.888	ENSG00000111701	APOBEC1	90	65.888	Homo_sapiens
ENSDORG00000023717	Apobec1	100	66.355	ENSAMEG00000007098	APOBEC1	90	66.355	Ailuropoda_melanoleuca
ENSDORG00000023717	Apobec1	81	39.535	ENSACAG00000028578	-	94	39.535	Anolis_carolinensis
ENSDORG00000023717	Apobec1	100	63.551	ENSANAG00000027743	APOBEC1	86	63.551	Aotus_nancymaae
ENSDORG00000023717	Apobec1	100	64.486	ENSBTAG00000014683	APOBEC1	90	64.486	Bos_taurus
ENSDORG00000023717	Apobec1	100	63.551	ENSCJAG00000005398	APOBEC1	96	63.551	Callithrix_jacchus
ENSDORG00000023717	Apobec1	100	67.757	ENSCAFG00000013901	APOBEC1	90	67.757	Canis_familiaris
ENSDORG00000023717	Apobec1	100	68.224	ENSCAFG00020003511	APOBEC1	89	68.224	Canis_lupus_dingo
ENSDORG00000023717	Apobec1	100	63.551	ENSCHIG00000011898	APOBEC1	88	63.551	Capra_hircus
ENSDORG00000023717	Apobec1	61	67.939	ENSTSYG00000029141	APOBEC1	92	67.939	Carlito_syrichta
ENSDORG00000023717	Apobec1	100	60.280	ENSCAPG00000015882	-	99	60.280	Cavia_aperea
ENSDORG00000023717	Apobec1	98	59.330	ENSCPOG00000033068	APOBEC1	86	59.314	Cavia_porcellus
ENSDORG00000023717	Apobec1	100	65.421	ENSCCAG00000022258	APOBEC1	90	65.421	Cebus_capucinus
ENSDORG00000023717	Apobec1	100	66.355	ENSCATG00000021613	APOBEC1	86	66.355	Cercocebus_atys
ENSDORG00000023717	Apobec1	100	59.813	ENSCLAG00000014645	APOBEC1	93	59.813	Chinchilla_lanigera
ENSDORG00000023717	Apobec1	86	65.574	ENSCSAG00000009817	APOBEC1	95	65.574	Chlorocebus_sabaeus
ENSDORG00000023717	Apobec1	78	42.262	ENSCPBG00000014331	-	70	42.405	Chrysemys_picta_bellii
ENSDORG00000023717	Apobec1	81	46.286	ENSCPBG00000014335	-	71	46.286	Chrysemys_picta_bellii
ENSDORG00000023717	Apobec1	92	43.000	ENSCPBG00000014328	-	87	43.000	Chrysemys_picta_bellii
ENSDORG00000023717	Apobec1	90	41.451	ENSCPBG00000014329	-	53	41.451	Chrysemys_picta_bellii
ENSDORG00000023717	Apobec1	92	41.624	ENSCPBG00000014327	-	74	41.624	Chrysemys_picta_bellii
ENSDORG00000023717	Apobec1	78	43.787	ENSCPBG00000017398	-	74	43.787	Chrysemys_picta_bellii
ENSDORG00000023717	Apobec1	100	65.888	ENSCANG00000038359	APOBEC1	93	65.888	Colobus_angolensis_palliatus
ENSDORG00000023717	Apobec1	100	60.748	ENSCGRG00001011130	Apobec1	93	60.748	Cricetulus_griseus_chok1gshd
ENSDORG00000023717	Apobec1	100	60.748	ENSCGRG00000008644	Apobec1	93	60.748	Cricetulus_griseus_crigri
ENSDORG00000023717	Apobec1	100	64.019	ENSDNOG00000010926	APOBEC1	90	64.019	Dasypus_novemcinctus
ENSDORG00000023717	Apobec1	100	61.860	ENSETEG00000004867	APOBEC1	91	61.860	Echinops_telfairi
ENSDORG00000023717	Apobec1	100	69.159	ENSEASG00005015951	APOBEC1	89	69.159	Equus_asinus_asinus
ENSDORG00000023717	Apobec1	86	68.306	ENSECAG00000017163	APOBEC1	95	68.306	Equus_caballus
ENSDORG00000023717	Apobec1	96	45.366	ENSEEUG00000007530	-	97	45.098	Erinaceus_europaeus
ENSDORG00000023717	Apobec1	100	56.279	ENSEEUG00000009112	-	90	57.353	Erinaceus_europaeus
ENSDORG00000023717	Apobec1	100	65.421	ENSFCAG00000009350	APOBEC1	90	65.421	Felis_catus
ENSDORG00000023717	Apobec1	66	46.099	ENSFALG00000007257	-	70	46.099	Ficedula_albicollis
ENSDORG00000023717	Apobec1	94	53.731	ENSFDAG00000018470	APOBEC1	96	53.731	Fukomys_damarensis
ENSDORG00000023717	Apobec1	75	42.593	ENSGAGG00000004947	-	76	47.458	Gopherus_agassizii
ENSDORG00000023717	Apobec1	80	43.275	ENSGAGG00000006624	-	62	43.275	Gopherus_agassizii
ENSDORG00000023717	Apobec1	94	40.099	ENSGAGG00000021744	-	76	41.327	Gopherus_agassizii
ENSDORG00000023717	Apobec1	80	36.782	ENSGAGG00000021745	-	64	36.782	Gopherus_agassizii
ENSDORG00000023717	Apobec1	93	43.500	ENSGAGG00000011837	-	87	45.562	Gopherus_agassizii
ENSDORG00000023717	Apobec1	100	57.009	ENSHGLG00000001495	APOBEC1	90	57.009	Heterocephalus_glaber_female
ENSDORG00000023717	Apobec1	100	57.009	ENSHGLG00100002187	APOBEC1	90	57.009	Heterocephalus_glaber_male
ENSDORG00000023717	Apobec1	100	54.206	ENSSTOG00000021971	APOBEC1	100	66.667	Ictidomys_tridecemlineatus
ENSDORG00000023717	Apobec1	100	64.019	ENSJJAG00000022108	Apobec1	93	64.019	Jaculus_jaculus
ENSDORG00000023717	Apobec1	100	62.617	ENSLAFG00000030837	APOBEC1	96	62.617	Loxodonta_africana
ENSDORG00000023717	Apobec1	100	66.355	ENSMFAG00000000277	APOBEC1	95	66.120	Macaca_fascicularis
ENSDORG00000023717	Apobec1	100	65.888	ENSMNEG00000029670	APOBEC1	90	65.888	Macaca_nemestrina
ENSDORG00000023717	Apobec1	100	66.355	ENSMLEG00000036301	APOBEC1	90	66.355	Mandrillus_leucophaeus
ENSDORG00000023717	Apobec1	100	61.682	ENSMAUG00000022167	Apobec1	96	61.682	Mesocricetus_auratus
ENSDORG00000023717	Apobec1	100	67.290	ENSMICG00000043645	APOBEC1	93	67.290	Microcebus_murinus
ENSDORG00000023717	Apobec1	100	58.685	ENSMODG00000018004	APOBEC1	90	58.685	Monodelphis_domestica
ENSDORG00000023717	Apobec1	100	63.551	ENSMUSG00000040613	Apobec1	93	63.551	Mus_musculus
ENSDORG00000023717	Apobec1	100	62.617	MGP_PahariEiJ_G0022580	-	93	62.617	Mus_pahari
ENSDORG00000023717	Apobec1	100	63.551	MGP_SPRETEiJ_G0029857	Apobec1	93	63.551	Mus_spretus
ENSDORG00000023717	Apobec1	100	68.692	ENSMPUG00000017532	APOBEC1	90	68.692	Mustela_putorius_furo
ENSDORG00000023717	Apobec1	100	64.486	ENSNGAG00000022607	Apobec1	93	64.486	Nannospalax_galili
ENSDORG00000023717	Apobec1	100	65.888	ENSNLEG00000005342	APOBEC1	90	65.888	Nomascus_leucogenys
ENSDORG00000023717	Apobec1	100	56.542	ENSMEUG00000013406	APOBEC1	90	56.542	Notamacropus_eugenii
ENSDORG00000023717	Apobec1	80	56.725	ENSOPRG00000009508	-	94	56.725	Ochotona_princeps
ENSDORG00000023717	Apobec1	100	65.888	ENSOCUG00000025736	APOBEC1	80	65.888	Oryctolagus_cuniculus
ENSDORG00000023717	Apobec1	100	64.486	ENSOGAG00000026415	APOBEC1	90	64.486	Otolemur_garnettii
ENSDORG00000023717	Apobec1	100	64.486	ENSOARG00000002072	APOBEC1	89	64.486	Ovis_aries
ENSDORG00000023717	Apobec1	100	61.682	ENSPPAG00000027657	APOBEC1	89	61.682	Pan_paniscus
ENSDORG00000023717	Apobec1	100	65.888	ENSPPRG00000012182	APOBEC1	90	65.888	Panthera_pardus
ENSDORG00000023717	Apobec1	100	65.888	ENSPTIG00000020280	APOBEC1	90	65.888	Panthera_tigris_altaica
ENSDORG00000023717	Apobec1	100	66.822	ENSPTRG00000004614	APOBEC1	90	66.822	Pan_troglodytes
ENSDORG00000023717	Apobec1	100	65.888	ENSPANG00000021027	APOBEC1	90	65.888	Papio_anubis
ENSDORG00000023717	Apobec1	59	46.296	ENSPSIG00000012791	-	69	46.296	Pelodiscus_sinensis
ENSDORG00000023717	Apobec1	80	42.105	ENSPSIG00000012568	-	74	42.105	Pelodiscus_sinensis
ENSDORG00000023717	Apobec1	100	61.215	ENSPEMG00000023841	Apobec1	93	61.215	Peromyscus_maniculatus_bairdii
ENSDORG00000023717	Apobec1	100	58.411	ENSPCIG00000023973	APOBEC1	90	58.411	Phascolarctos_cinereus
ENSDORG00000023717	Apobec1	100	64.953	ENSPPYG00000004228	APOBEC1	86	64.953	Pongo_abelii
ENSDORG00000023717	Apobec1	80	68.023	ENSPCAG00000008733	APOBEC1	91	68.023	Procavia_capensis
ENSDORG00000023717	Apobec1	100	65.888	ENSPCOG00000013957	APOBEC1	94	65.888	Propithecus_coquereli
ENSDORG00000023717	Apobec1	100	52.336	ENSPVAG00000010709	APOBEC1	90	52.336	Pteropus_vampyrus
ENSDORG00000023717	Apobec1	100	61.682	ENSRNOG00000015411	Apobec1	93	61.682	Rattus_norvegicus
ENSDORG00000023717	Apobec1	100	65.421	ENSRBIG00000031161	APOBEC1	90	65.421	Rhinopithecus_bieti
ENSDORG00000023717	Apobec1	100	65.421	ENSRROG00000033576	APOBEC1	95	65.027	Rhinopithecus_roxellana
ENSDORG00000023717	Apobec1	80	66.860	ENSSBOG00000030587	APOBEC1	97	66.860	Saimiri_boliviensis_boliviensis
ENSDORG00000023717	Apobec1	100	57.477	ENSSHAG00000008925	APOBEC1	93	57.477	Sarcophilus_harrisii
ENSDORG00000023717	Apobec1	80	63.158	ENSSARG00000000032	-	99	63.158	Sorex_araneus
ENSDORG00000023717	Apobec1	61	64.615	ENSSARG00000011972	-	98	64.615	Sorex_araneus
ENSDORG00000023717	Apobec1	93	34.826	ENSSPUG00000009044	-	77	34.826	Sphenodon_punctatus
ENSDORG00000023717	Apobec1	100	66.355	ENSSSCG00000000668	APOBEC1	90	66.355	Sus_scrofa
ENSDORG00000023717	Apobec1	67	48.252	ENSTGUG00000013118	-	99	48.252	Taeniopygia_guttata
ENSDORG00000023717	Apobec1	100	63.084	ENSTBEG00000010043	APOBEC1	90	63.084	Tupaia_belangeri
ENSDORG00000023717	Apobec1	80	65.116	ENSTTRG00000014015	APOBEC1	91	65.116	Tursiops_truncatus
ENSDORG00000023717	Apobec1	100	66.355	ENSUAMG00000011636	APOBEC1	87	66.355	Ursus_americanus
ENSDORG00000023717	Apobec1	100	66.822	ENSUMAG00000016552	APOBEC1	87	66.822	Ursus_maritimus
ENSDORG00000023717	Apobec1	100	63.551	ENSVPAG00000001343	APOBEC1	90	63.551	Vicugna_pacos
ENSDORG00000023717	Apobec1	100	69.159	ENSVVUG00000010522	APOBEC1	90	69.159	Vulpes_vulpes