EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000024225 (Gene tree)
Gene ID: 105994746
Gene Symbol: Lsm4
Alias: LSM4
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 2549 bases
Position: chrKN672454.1:1754101-1756649
Accession: 105994746
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000016831	LSM	PF01423.22	7.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000027793	-	321	-	ENSDORP00000025260	106 (aa)	-	UPI000BAD11E9
ENSDORT00000027071	-	847	XM_013028387	ENSDORP00000016831	139 (aa)	XP_012883841	A0A1S3G4V0

Gene Model

Click here to download ENSDORG00000024225's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000024225's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000024225	Lsm4	78	31.624	ENSDORG00000027706	-	58	31.081
ENSDORG00000024225	Lsm4	70	33.000	ENSDORG00000026571	Lsm2	93	34.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000024225	Lsm4	100	97.842	ENSG00000130520	LSM4	100	97.842	Homo_sapiens
ENSDORG00000024225	Lsm4	71	95.960	ENSAPOG00000005643	lsm4	58	97.727	Acanthochromis_polyacanthus
ENSDORG00000024225	Lsm4	99	97.826	ENSAMEG00000011162	LSM4	95	97.826	Ailuropoda_melanoleuca
ENSDORG00000024225	Lsm4	99	76.923	ENSAOCG00000006414	lsm4	59	97.727	Amphiprion_ocellaris
ENSDORG00000024225	Lsm4	99	74.306	ENSAPEG00000006238	lsm4	59	97.727	Amphiprion_percula
ENSDORG00000024225	Lsm4	71	95.960	ENSATEG00000016559	lsm4	58	97.727	Anabas_testudineus
ENSDORG00000024225	Lsm4	100	97.842	ENSANAG00000034659	LSM4	100	97.842	Aotus_nancymaae
ENSDORG00000024225	Lsm4	99	80.556	ENSACLG00000022738	lsm4	60	97.727	Astatotilapia_calliptera
ENSDORG00000024225	Lsm4	99	79.710	ENSAMXG00000016932	lsm4	96	83.212	Astyanax_mexicanus
ENSDORG00000024225	Lsm4	100	97.842	ENSBTAG00000008578	LSM4	100	97.842	Bos_taurus
ENSDORG00000024225	Lsm4	60	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSDORG00000024225	Lsm4	100	97.842	ENSCJAG00000014171	LSM4	100	97.842	Callithrix_jacchus
ENSDORG00000024225	Lsm4	99	97.826	ENSCAFG00000014900	LSM4	90	97.826	Canis_familiaris
ENSDORG00000024225	Lsm4	100	97.842	ENSCAFG00020012137	LSM4	100	97.842	Canis_lupus_dingo
ENSDORG00000024225	Lsm4	99	97.826	ENSCHIG00000010928	LSM4	91	97.826	Capra_hircus
ENSDORG00000024225	Lsm4	100	97.122	ENSTSYG00000030906	LSM4	100	97.122	Carlito_syrichta
ENSDORG00000024225	Lsm4	100	95.683	ENSCAPG00000014140	LSM4	100	95.683	Cavia_aperea
ENSDORG00000024225	Lsm4	100	95.683	ENSCPOG00000024117	LSM4	100	95.683	Cavia_porcellus
ENSDORG00000024225	Lsm4	100	97.842	ENSCCAG00000036308	LSM4	100	97.842	Cebus_capucinus
ENSDORG00000024225	Lsm4	100	97.842	ENSCATG00000029311	LSM4	100	97.842	Cercocebus_atys
ENSDORG00000024225	Lsm4	100	97.122	ENSCLAG00000010828	LSM4	100	97.122	Chinchilla_lanigera
ENSDORG00000024225	Lsm4	100	97.842	ENSCSAG00000005370	LSM4	100	97.842	Chlorocebus_sabaeus
ENSDORG00000024225	Lsm4	100	80.576	ENSCPBG00000012925	LSM4	100	88.489	Chrysemys_picta_bellii
ENSDORG00000024225	Lsm4	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSDORG00000024225	Lsm4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSDORG00000024225	Lsm4	100	97.842	ENSCANG00000043686	LSM4	100	97.842	Colobus_angolensis_palliatus
ENSDORG00000024225	Lsm4	100	94.964	ENSCGRG00001014436	Lsm4	100	94.964	Cricetulus_griseus_chok1gshd
ENSDORG00000024225	Lsm4	99	94.928	ENSCGRG00000009398	Lsm4	100	94.928	Cricetulus_griseus_crigri
ENSDORG00000024225	Lsm4	70	95.876	ENSCSEG00000016127	lsm4	96	77.372	Cynoglossus_semilaevis
ENSDORG00000024225	Lsm4	88	74.797	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSDORG00000024225	Lsm4	99	77.536	ENSCVAG00000010601	lsm4	62	97.727	Cyprinodon_variegatus
ENSDORG00000024225	Lsm4	97	77.305	ENSDARG00000023852	lsm4	62	97.727	Danio_rerio
ENSDORG00000024225	Lsm4	70	81.443	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSDORG00000024225	Lsm4	89	95.968	ENSETEG00000007762	-	100	95.968	Echinops_telfairi
ENSDORG00000024225	Lsm4	54	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSDORG00000024225	Lsm4	100	97.842	ENSECAG00000010141	LSM4	57	97.842	Equus_caballus
ENSDORG00000024225	Lsm4	95	81.343	ENSELUG00000012821	lsm4	100	81.061	Esox_lucius
ENSDORG00000024225	Lsm4	100	97.842	ENSFCAG00000040580	LSM4	100	97.842	Felis_catus
ENSDORG00000024225	Lsm4	99	79.710	ENSFALG00000009478	LSM4	99	88.406	Ficedula_albicollis
ENSDORG00000024225	Lsm4	99	96.377	ENSFDAG00000010124	LSM4	100	96.377	Fukomys_damarensis
ENSDORG00000024225	Lsm4	69	95.833	ENSGMOG00000007729	lsm4	95	78.014	Gadus_morhua
ENSDORG00000024225	Lsm4	100	79.856	ENSGALG00000003385	LSM4	100	88.489	Gallus_gallus
ENSDORG00000024225	Lsm4	99	82.857	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSDORG00000024225	Lsm4	68	96.842	ENSGACG00000008140	lsm4	59	97.727	Gasterosteus_aculeatus
ENSDORG00000024225	Lsm4	100	80.576	ENSGAGG00000017812	LSM4	100	88.489	Gopherus_agassizii
ENSDORG00000024225	Lsm4	100	97.842	ENSGGOG00000012914	-	100	97.842	Gorilla_gorilla
ENSDORG00000024225	Lsm4	100	96.403	ENSHGLG00000006568	LSM4	100	96.403	Heterocephalus_glaber_female
ENSDORG00000024225	Lsm4	67	98.925	ENSHGLG00100007894	LSM4	100	98.925	Heterocephalus_glaber_male
ENSDORG00000024225	Lsm4	99	76.642	ENSHCOG00000008819	lsm4	62	97.727	Hippocampus_comes
ENSDORG00000024225	Lsm4	99	78.986	ENSIPUG00000005368	Lsm4	96	82.482	Ictalurus_punctatus
ENSDORG00000024225	Lsm4	100	97.842	ENSSTOG00000016494	LSM4	100	97.842	Ictidomys_tridecemlineatus
ENSDORG00000024225	Lsm4	100	94.964	ENSJJAG00000017420	Lsm4	100	94.964	Jaculus_jaculus
ENSDORG00000024225	Lsm4	62	96.512	ENSKMAG00000005073	lsm4	61	96.591	Kryptolebias_marmoratus
ENSDORG00000024225	Lsm4	71	95.960	ENSLBEG00000027930	lsm4	59	97.727	Labrus_bergylta
ENSDORG00000024225	Lsm4	99	81.752	ENSLACG00000015861	LSM4	98	81.752	Latimeria_chalumnae
ENSDORG00000024225	Lsm4	93	82.946	ENSLOCG00000002025	lsm4	62	97.727	Lepisosteus_oculatus
ENSDORG00000024225	Lsm4	99	96.377	ENSLAFG00000017459	LSM4	99	96.377	Loxodonta_africana
ENSDORG00000024225	Lsm4	100	97.842	ENSMFAG00000031194	LSM4	100	97.842	Macaca_fascicularis
ENSDORG00000024225	Lsm4	100	97.842	ENSMMUG00000004405	LSM4	100	97.842	Macaca_mulatta
ENSDORG00000024225	Lsm4	100	97.842	ENSMNEG00000042899	LSM4	100	97.842	Macaca_nemestrina
ENSDORG00000024225	Lsm4	100	97.842	ENSMLEG00000027948	LSM4	100	97.842	Mandrillus_leucophaeus
ENSDORG00000024225	Lsm4	99	78.986	ENSMAMG00000006190	lsm4	96	76.642	Mastacembelus_armatus
ENSDORG00000024225	Lsm4	99	81.119	ENSMZEG00005016420	lsm4	60	97.727	Maylandia_zebra
ENSDORG00000024225	Lsm4	99	82.014	ENSMGAG00000004976	LSM4	99	88.406	Meleagris_gallopavo
ENSDORG00000024225	Lsm4	100	97.122	ENSMICG00000000222	LSM4	100	97.122	Microcebus_murinus
ENSDORG00000024225	Lsm4	100	95.683	ENSMOCG00000020861	Lsm4	100	95.683	Microtus_ochrogaster
ENSDORG00000024225	Lsm4	89	94.355	ENSMODG00000015044	-	100	94.355	Monodelphis_domestica
ENSDORG00000024225	Lsm4	99	75.714	ENSMALG00000018159	lsm4	62	96.591	Monopterus_albus
ENSDORG00000024225	Lsm4	100	95.683	MGP_CAROLIEiJ_G0031158	Lsm4	100	95.683	Mus_caroli
ENSDORG00000024225	Lsm4	100	95.683	ENSMUSG00000031848	Lsm4	100	95.683	Mus_musculus
ENSDORG00000024225	Lsm4	100	95.683	MGP_PahariEiJ_G0021623	Lsm4	100	95.683	Mus_pahari
ENSDORG00000024225	Lsm4	100	95.683	MGP_SPRETEiJ_G0032276	Lsm4	100	95.683	Mus_spretus
ENSDORG00000024225	Lsm4	100	97.842	ENSMPUG00000015589	LSM4	100	97.842	Mustela_putorius_furo
ENSDORG00000024225	Lsm4	99	97.826	ENSMLUG00000004010	LSM4	99	97.826	Myotis_lucifugus
ENSDORG00000024225	Lsm4	100	95.683	ENSNGAG00000008644	Lsm4	100	95.683	Nannospalax_galili
ENSDORG00000024225	Lsm4	71	95.918	ENSNBRG00000022150	lsm4	54	97.701	Neolamprologus_brichardi
ENSDORG00000024225	Lsm4	89	91.129	ENSMEUG00000013229	LSM4	100	91.129	Notamacropus_eugenii
ENSDORG00000024225	Lsm4	89	92.742	ENSOPRG00000005575	LSM4	100	92.742	Ochotona_princeps
ENSDORG00000024225	Lsm4	100	87.770	ENSODEG00000004519	-	100	81.295	Octodon_degus
ENSDORG00000024225	Lsm4	100	74.101	ENSODEG00000011712	-	100	74.101	Octodon_degus
ENSDORG00000024225	Lsm4	100	97.842	ENSODEG00000020549	-	100	97.842	Octodon_degus
ENSDORG00000024225	Lsm4	99	80.556	ENSONIG00000012724	lsm4	60	97.727	Oreochromis_niloticus
ENSDORG00000024225	Lsm4	63	92.308	ENSOANG00000007434	LSM4	78	92.308	Ornithorhynchus_anatinus
ENSDORG00000024225	Lsm4	99	82.979	ENSORLG00000008391	lsm4	97	74.101	Oryzias_latipes
ENSDORG00000024225	Lsm4	99	82.979	ENSORLG00020014829	lsm4	97	74.101	Oryzias_latipes_hni
ENSDORG00000024225	Lsm4	99	82.979	ENSORLG00015010205	lsm4	97	74.101	Oryzias_latipes_hsok
ENSDORG00000024225	Lsm4	100	81.295	ENSOMEG00000003606	lsm4	61	96.591	Oryzias_melastigma
ENSDORG00000024225	Lsm4	71	97.980	ENSOGAG00000027992	LSM4	60	98.851	Otolemur_garnettii
ENSDORG00000024225	Lsm4	86	97.479	ENSOARG00000012553	LSM4	94	97.479	Ovis_aries
ENSDORG00000024225	Lsm4	100	97.842	ENSPPAG00000044045	-	100	97.842	Pan_paniscus
ENSDORG00000024225	Lsm4	100	97.842	ENSPPRG00000018264	LSM4	100	97.842	Panthera_pardus
ENSDORG00000024225	Lsm4	99	97.826	ENSPTIG00000006306	LSM4	100	97.826	Panthera_tigris_altaica
ENSDORG00000024225	Lsm4	100	97.842	ENSPTRG00000031470	LSM4	100	97.842	Pan_troglodytes
ENSDORG00000024225	Lsm4	100	97.842	ENSPANG00000014399	LSM4	100	97.842	Papio_anubis
ENSDORG00000024225	Lsm4	99	80.292	ENSPKIG00000006154	lsm4	62	97.727	Paramormyrops_kingsleyae
ENSDORG00000024225	Lsm4	99	79.710	ENSPSIG00000012358	LSM4	100	88.406	Pelodiscus_sinensis
ENSDORG00000024225	Lsm4	100	95.683	ENSPEMG00000001358	Lsm4	100	95.683	Peromyscus_maniculatus_bairdii
ENSDORG00000024225	Lsm4	99	81.295	ENSPLAG00000016267	lsm4	62	97.727	Poecilia_latipinna
ENSDORG00000024225	Lsm4	99	82.857	ENSPMEG00000016378	lsm4	63	97.701	Poecilia_mexicana
ENSDORG00000024225	Lsm4	100	97.842	ENSPPYG00000009736	LSM4	100	97.842	Pongo_abelii
ENSDORG00000024225	Lsm4	89	95.968	ENSPCAG00000008513	LSM4	100	95.968	Procavia_capensis
ENSDORG00000024225	Lsm4	100	97.122	ENSPCOG00000019837	LSM4	100	97.122	Propithecus_coquereli
ENSDORG00000024225	Lsm4	100	97.842	ENSPVAG00000015383	LSM4	100	97.842	Pteropus_vampyrus
ENSDORG00000024225	Lsm4	99	81.119	ENSPNYG00000016794	lsm4	60	97.727	Pundamilia_nyererei
ENSDORG00000024225	Lsm4	96	81.343	ENSPNAG00000016598	lsm4	65	97.701	Pygocentrus_nattereri
ENSDORG00000024225	Lsm4	100	95.683	ENSRNOG00000019572	Lsm4	100	95.683	Rattus_norvegicus
ENSDORG00000024225	Lsm4	100	97.842	ENSRBIG00000024717	LSM4	100	97.842	Rhinopithecus_bieti
ENSDORG00000024225	Lsm4	100	97.842	ENSRROG00000045706	LSM4	100	97.842	Rhinopithecus_roxellana
ENSDORG00000024225	Lsm4	60	40.860	YER112W	LSM4	51	39.583	Saccharomyces_cerevisiae
ENSDORG00000024225	Lsm4	90	97.600	ENSSBOG00000022455	LSM4	100	97.600	Saimiri_boliviensis_boliviensis
ENSDORG00000024225	Lsm4	100	94.964	ENSSHAG00000011559	LSM4	100	94.964	Sarcophilus_harrisii
ENSDORG00000024225	Lsm4	99	78.832	ENSSFOG00015021067	lsm4	62	97.727	Scleropages_formosus
ENSDORG00000024225	Lsm4	99	71.127	ENSSMAG00000021020	lsm4	95	71.831	Scophthalmus_maximus
ENSDORG00000024225	Lsm4	71	95.960	ENSSDUG00000009588	lsm4	53	97.727	Seriola_dumerili
ENSDORG00000024225	Lsm4	71	95.960	ENSSLDG00000006827	lsm4	52	97.727	Seriola_lalandi_dorsalis
ENSDORG00000024225	Lsm4	63	97.701	ENSSPUG00000010166	LSM4	56	97.701	Sphenodon_punctatus
ENSDORG00000024225	Lsm4	71	95.960	ENSSPAG00000011615	lsm4	58	97.727	Stegastes_partitus
ENSDORG00000024225	Lsm4	100	97.842	ENSSSCG00000034314	LSM4	100	97.842	Sus_scrofa
ENSDORG00000024225	Lsm4	99	82.143	ENSTRUG00000021737	lsm4	62	96.591	Takifugu_rubripes
ENSDORG00000024225	Lsm4	99	80.714	ENSTNIG00000010191	lsm4	61	97.727	Tetraodon_nigroviridis
ENSDORG00000024225	Lsm4	99	97.826	ENSUAMG00000000665	LSM4	99	97.826	Ursus_americanus
ENSDORG00000024225	Lsm4	100	97.842	ENSUMAG00000009013	LSM4	100	97.842	Ursus_maritimus
ENSDORG00000024225	Lsm4	99	97.826	ENSVVUG00000008136	LSM4	71	97.826	Vulpes_vulpes
ENSDORG00000024225	Lsm4	100	90.647	ENSXETG00000024933	lsm4	100	88.489	Xenopus_tropicalis