EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000024460 (Gene tree)
Gene ID: 105990275
Gene Symbol: Lsm7
Alias: 0910001B06Rik|1110033F18Rik
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 4361 bases
Position: chrKN672410.1:1542316-1546676
Accession: 1913344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000027344	LSM	PF01423.22	2.4e-21	1	1
ENSDORP00000020143	LSM	PF01423.22	2.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000027652	-	309	-	ENSDORP00000027344	102 (aa)	-	UPI000BAD1870
ENSDORT00000035780	-	309	-	ENSDORP00000020143	102 (aa)	-	UPI000BAD16B7

Gene Model

Click here to download ENSDORG00000024460's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000024460's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000024460	Lsm7	67	39.706	ENSDORG00000005623	-	88	39.706
ENSDORG00000024460	Lsm7	73	35.526	ENSDORG00000027868	Lsm8	73	35.526
ENSDORG00000024460	Lsm7	63	39.062	ENSDORG00000030093	-	86	39.062
ENSDORG00000024460	Lsm7	70	38.028	ENSDORG00000023335	-	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000024460	Lsm7	100	98.039	ENSG00000130332	LSM7	100	97.959	Homo_sapiens
ENSDORG00000024460	Lsm7	92	94.681	ENSAPOG00000015573	lsm7	81	94.681	Acanthochromis_polyacanthus
ENSDORG00000024460	Lsm7	99	99.010	ENSAMEG00000005484	LSM7	98	99.010	Ailuropoda_melanoleuca
ENSDORG00000024460	Lsm7	96	93.878	ENSACIG00000006498	lsm7	78	93.878	Amphilophus_citrinellus
ENSDORG00000024460	Lsm7	99	93.069	ENSAOCG00000001077	lsm7	92	93.069	Amphiprion_ocellaris
ENSDORG00000024460	Lsm7	100	93.137	ENSAPEG00000000694	lsm7	99	93.137	Amphiprion_percula
ENSDORG00000024460	Lsm7	99	93.069	ENSAPEG00000024447	lsm7	92	93.069	Amphiprion_percula
ENSDORG00000024460	Lsm7	100	93.137	ENSATEG00000008557	lsm7	99	93.137	Anabas_testudineus
ENSDORG00000024460	Lsm7	100	90.196	ENSANAG00000022222	-	99	90.196	Aotus_nancymaae
ENSDORG00000024460	Lsm7	100	98.039	ENSANAG00000037196	-	99	98.039	Aotus_nancymaae
ENSDORG00000024460	Lsm7	100	92.157	ENSACLG00000021021	lsm7	99	92.157	Astatotilapia_calliptera
ENSDORG00000024460	Lsm7	100	93.137	ENSAMXG00000037622	lsm7	99	93.137	Astyanax_mexicanus
ENSDORG00000024460	Lsm7	100	98.039	ENSBTAG00000004521	LSM7	99	98.039	Bos_taurus
ENSDORG00000024460	Lsm7	98	58.000	WBGene00003081	lsm-7	96	58.000	Caenorhabditis_elegans
ENSDORG00000024460	Lsm7	54	98.182	ENSCJAG00000039713	-	67	98.182	Callithrix_jacchus
ENSDORG00000024460	Lsm7	99	99.010	ENSCAFG00000019409	LSM7	98	99.010	Canis_familiaris
ENSDORG00000024460	Lsm7	99	99.010	ENSCAFG00020018168	LSM7	74	99.010	Canis_lupus_dingo
ENSDORG00000024460	Lsm7	99	98.020	ENSCHIG00000023663	LSM7	98	98.020	Capra_hircus
ENSDORG00000024460	Lsm7	70	97.183	ENSCAPG00000014534	LSM7	100	97.183	Cavia_aperea
ENSDORG00000024460	Lsm7	100	98.039	ENSCPOG00000014025	LSM7	100	98.020	Cavia_porcellus
ENSDORG00000024460	Lsm7	100	98.039	ENSCCAG00000035456	LSM7	100	98.039	Cebus_capucinus
ENSDORG00000024460	Lsm7	100	98.039	ENSCATG00000023543	LSM7	99	98.039	Cercocebus_atys
ENSDORG00000024460	Lsm7	100	98.039	ENSCLAG00000011635	LSM7	99	98.039	Chinchilla_lanigera
ENSDORG00000024460	Lsm7	100	98.039	ENSCSAG00000011599	LSM7	99	98.039	Chlorocebus_sabaeus
ENSDORG00000024460	Lsm7	71	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSDORG00000024460	Lsm7	94	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSDORG00000024460	Lsm7	100	98.039	ENSCANG00000035525	LSM7	99	98.039	Colobus_angolensis_palliatus
ENSDORG00000024460	Lsm7	100	97.059	ENSCGRG00001000807	-	99	97.059	Cricetulus_griseus_chok1gshd
ENSDORG00000024460	Lsm7	89	87.912	ENSCGRG00001016005	-	93	87.912	Cricetulus_griseus_chok1gshd
ENSDORG00000024460	Lsm7	99	97.030	ENSCGRG00000014355	-	97	97.030	Cricetulus_griseus_crigri
ENSDORG00000024460	Lsm7	89	87.912	ENSCGRG00000006821	-	93	87.912	Cricetulus_griseus_crigri
ENSDORG00000024460	Lsm7	100	93.137	ENSCSEG00000014900	lsm7	86	93.137	Cynoglossus_semilaevis
ENSDORG00000024460	Lsm7	99	94.059	ENSCVAG00000021091	lsm7	94	94.059	Cyprinodon_variegatus
ENSDORG00000024460	Lsm7	100	93.137	ENSDARG00000058328	lsm7	99	93.137	Danio_rerio
ENSDORG00000024460	Lsm7	95	77.551	FBgn0261068	LSm7	89	77.551	Drosophila_melanogaster
ENSDORG00000024460	Lsm7	99	95.050	ENSETEG00000012788	LSM7	99	95.050	Echinops_telfairi
ENSDORG00000024460	Lsm7	99	83.168	ENSEBUG00000016992	lsm7	97	83.168	Eptatretus_burgeri
ENSDORG00000024460	Lsm7	81	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSDORG00000024460	Lsm7	100	96.078	ENSECAG00000001440	LSM7	65	96.078	Equus_caballus
ENSDORG00000024460	Lsm7	100	99.020	ENSFCAG00000003445	LSM7	99	99.020	Felis_catus
ENSDORG00000024460	Lsm7	99	95.050	ENSFALG00000011912	LSM7	100	95.050	Ficedula_albicollis
ENSDORG00000024460	Lsm7	94	97.917	ENSFDAG00000007661	LSM7	100	97.917	Fukomys_damarensis
ENSDORG00000024460	Lsm7	90	93.478	ENSFHEG00000006349	lsm7	90	94.059	Fundulus_heteroclitus
ENSDORG00000024460	Lsm7	99	91.089	ENSGMOG00000013320	lsm7	98	91.089	Gadus_morhua
ENSDORG00000024460	Lsm7	100	94.118	ENSGAFG00000013902	lsm7	99	94.118	Gambusia_affinis
ENSDORG00000024460	Lsm7	99	92.079	ENSGACG00000010390	lsm7	98	92.079	Gasterosteus_aculeatus
ENSDORG00000024460	Lsm7	100	98.039	ENSGGOG00000010172	LSM7	99	98.039	Gorilla_gorilla
ENSDORG00000024460	Lsm7	100	92.157	ENSHBUG00000004616	lsm7	99	92.157	Haplochromis_burtoni
ENSDORG00000024460	Lsm7	100	98.039	ENSHGLG00000010587	LSM7	99	98.039	Heterocephalus_glaber_female
ENSDORG00000024460	Lsm7	100	98.039	ENSHGLG00100000852	LSM7	99	98.039	Heterocephalus_glaber_male
ENSDORG00000024460	Lsm7	99	92.079	ENSHCOG00000020252	lsm7	100	92.079	Hippocampus_comes
ENSDORG00000024460	Lsm7	100	93.137	ENSIPUG00000024724	lsm7	99	93.137	Ictalurus_punctatus
ENSDORG00000024460	Lsm7	100	97.059	ENSSTOG00000028372	LSM7	100	97.059	Ictidomys_tridecemlineatus
ENSDORG00000024460	Lsm7	99	96.040	ENSJJAG00000001936	Lsm7	98	96.040	Jaculus_jaculus
ENSDORG00000024460	Lsm7	100	94.118	ENSKMAG00000022151	lsm7	99	94.118	Kryptolebias_marmoratus
ENSDORG00000024460	Lsm7	100	92.157	ENSLBEG00000005203	lsm7	99	92.157	Labrus_bergylta
ENSDORG00000024460	Lsm7	99	97.030	ENSLACG00000015700	LSM7	98	97.030	Latimeria_chalumnae
ENSDORG00000024460	Lsm7	99	96.040	ENSLOCG00000004356	lsm7	98	96.040	Lepisosteus_oculatus
ENSDORG00000024460	Lsm7	99	98.020	ENSLAFG00000029302	LSM7	98	98.020	Loxodonta_africana
ENSDORG00000024460	Lsm7	100	98.039	ENSMFAG00000044572	LSM7	99	98.039	Macaca_fascicularis
ENSDORG00000024460	Lsm7	100	98.039	ENSMMUG00000000452	LSM7	100	97.059	Macaca_mulatta
ENSDORG00000024460	Lsm7	100	98.039	ENSMNEG00000004393	LSM7	99	98.039	Macaca_nemestrina
ENSDORG00000024460	Lsm7	100	98.039	ENSMLEG00000030852	LSM7	100	98.020	Mandrillus_leucophaeus
ENSDORG00000024460	Lsm7	100	92.157	ENSMAMG00000005410	lsm7	99	92.157	Mastacembelus_armatus
ENSDORG00000024460	Lsm7	100	92.157	ENSMZEG00005028055	lsm7	99	92.157	Maylandia_zebra
ENSDORG00000024460	Lsm7	100	96.078	ENSMGAG00000000750	LSM7	88	96.078	Meleagris_gallopavo
ENSDORG00000024460	Lsm7	100	97.059	ENSMAUG00000009276	Lsm7	99	97.059	Mesocricetus_auratus
ENSDORG00000024460	Lsm7	100	98.039	ENSMICG00000009988	-	99	98.039	Microcebus_murinus
ENSDORG00000024460	Lsm7	100	98.039	ENSMICG00000028619	-	99	98.039	Microcebus_murinus
ENSDORG00000024460	Lsm7	100	97.059	ENSMOCG00000016925	Lsm7	99	97.059	Microtus_ochrogaster
ENSDORG00000024460	Lsm7	100	93.137	ENSMMOG00000019645	lsm7	97	93.137	Mola_mola
ENSDORG00000024460	Lsm7	100	97.059	ENSMODG00000004722	LSM7	99	97.059	Monodelphis_domestica
ENSDORG00000024460	Lsm7	100	92.157	ENSMALG00000014511	lsm7	78	92.157	Monopterus_albus
ENSDORG00000024460	Lsm7	100	96.078	MGP_CAROLIEiJ_G0015607	Lsm7	99	96.078	Mus_caroli
ENSDORG00000024460	Lsm7	100	96.078	ENSMUSG00000035215	Lsm7	99	96.078	Mus_musculus
ENSDORG00000024460	Lsm7	100	96.078	MGP_PahariEiJ_G0031020	Lsm7	99	96.078	Mus_pahari
ENSDORG00000024460	Lsm7	100	96.078	MGP_SPRETEiJ_G0016425	Lsm7	99	96.078	Mus_spretus
ENSDORG00000024460	Lsm7	99	99.010	ENSMLUG00000013097	-	98	99.010	Myotis_lucifugus
ENSDORG00000024460	Lsm7	100	92.157	ENSMLUG00000024002	-	94	92.157	Myotis_lucifugus
ENSDORG00000024460	Lsm7	100	96.078	ENSNGAG00000021637	Lsm7	99	96.078	Nannospalax_galili
ENSDORG00000024460	Lsm7	92	92.553	ENSNBRG00000001237	-	82	91.176	Neolamprologus_brichardi
ENSDORG00000024460	Lsm7	99	92.079	ENSNBRG00000015770	lsm7	87	92.079	Neolamprologus_brichardi
ENSDORG00000024460	Lsm7	100	98.039	ENSNLEG00000002265	LSM7	99	98.039	Nomascus_leucogenys
ENSDORG00000024460	Lsm7	100	77.451	ENSODEG00000008190	-	99	77.451	Octodon_degus
ENSDORG00000024460	Lsm7	100	98.039	ENSODEG00000013590	-	99	98.039	Octodon_degus
ENSDORG00000024460	Lsm7	100	91.176	ENSODEG00000018769	-	99	91.176	Octodon_degus
ENSDORG00000024460	Lsm7	100	92.157	ENSONIG00000001801	lsm7	88	92.157	Oreochromis_niloticus
ENSDORG00000024460	Lsm7	100	93.137	ENSORLG00000023951	lsm7	99	93.137	Oryzias_latipes
ENSDORG00000024460	Lsm7	100	93.137	ENSORLG00020022226	lsm7	99	93.137	Oryzias_latipes_hni
ENSDORG00000024460	Lsm7	99	93.069	ENSORLG00015020044	lsm7	94	93.069	Oryzias_latipes_hsok
ENSDORG00000024460	Lsm7	100	93.137	ENSOMEG00000012806	lsm7	99	93.137	Oryzias_melastigma
ENSDORG00000024460	Lsm7	99	96.040	ENSOGAG00000000144	-	99	96.040	Otolemur_garnettii
ENSDORG00000024460	Lsm7	100	86.275	ENSOGAG00000024373	-	99	86.275	Otolemur_garnettii
ENSDORG00000024460	Lsm7	99	98.020	ENSOARG00000014013	LSM7	98	98.020	Ovis_aries
ENSDORG00000024460	Lsm7	100	98.039	ENSPPAG00000026500	LSM7	99	98.039	Pan_paniscus
ENSDORG00000024460	Lsm7	100	99.020	ENSPPRG00000008624	LSM7	99	99.020	Panthera_pardus
ENSDORG00000024460	Lsm7	99	99.010	ENSPTIG00000016252	LSM7	98	99.010	Panthera_tigris_altaica
ENSDORG00000024460	Lsm7	100	98.039	ENSPTRG00000010233	LSM7	99	98.039	Pan_troglodytes
ENSDORG00000024460	Lsm7	100	98.039	ENSPANG00000020668	LSM7	99	98.039	Papio_anubis
ENSDORG00000024460	Lsm7	100	95.098	ENSPKIG00000011325	lsm7	99	95.098	Paramormyrops_kingsleyae
ENSDORG00000024460	Lsm7	99	96.040	ENSPSIG00000017149	LSM7	89	96.040	Pelodiscus_sinensis
ENSDORG00000024460	Lsm7	100	93.137	ENSPMGG00000006498	lsm7	99	93.137	Periophthalmus_magnuspinnatus
ENSDORG00000024460	Lsm7	100	97.059	ENSPCIG00000030454	LSM7	100	97.059	Phascolarctos_cinereus
ENSDORG00000024460	Lsm7	99	93.069	ENSPFOG00000012467	lsm7	89	93.069	Poecilia_formosa
ENSDORG00000024460	Lsm7	100	92.157	ENSPLAG00000000252	lsm7	94	93.069	Poecilia_latipinna
ENSDORG00000024460	Lsm7	100	92.157	ENSPMEG00000000587	lsm7	94	93.069	Poecilia_mexicana
ENSDORG00000024460	Lsm7	77	75.000	ENSPREG00000016718	lsm7	64	75.000	Poecilia_reticulata
ENSDORG00000024460	Lsm7	72	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSDORG00000024460	Lsm7	100	98.039	ENSPCOG00000017177	LSM7	100	98.039	Propithecus_coquereli
ENSDORG00000024460	Lsm7	100	92.157	ENSPNYG00000006938	lsm7	99	92.157	Pundamilia_nyererei
ENSDORG00000024460	Lsm7	100	93.137	ENSPNAG00000010141	lsm7	100	92.157	Pygocentrus_nattereri
ENSDORG00000024460	Lsm7	100	96.078	ENSRNOG00000019552	Lsm7	99	96.078	Rattus_norvegicus
ENSDORG00000024460	Lsm7	100	98.039	ENSRBIG00000035978	LSM7	99	98.039	Rhinopithecus_bieti
ENSDORG00000024460	Lsm7	100	98.039	ENSRROG00000034044	LSM7	99	98.039	Rhinopithecus_roxellana
ENSDORG00000024460	Lsm7	87	48.913	YNL147W	-	80	48.913	Saccharomyces_cerevisiae
ENSDORG00000024460	Lsm7	100	98.039	ENSSBOG00000034899	LSM7	99	98.039	Saimiri_boliviensis_boliviensis
ENSDORG00000024460	Lsm7	100	93.137	ENSSFOG00015006728	lsm7	99	93.137	Scleropages_formosus
ENSDORG00000024460	Lsm7	99	93.069	ENSSMAG00000004195	lsm7	93	93.069	Scophthalmus_maximus
ENSDORG00000024460	Lsm7	100	93.137	ENSSDUG00000001863	lsm7	99	93.137	Seriola_dumerili
ENSDORG00000024460	Lsm7	100	93.137	ENSSLDG00000016339	lsm7	99	93.137	Seriola_lalandi_dorsalis
ENSDORG00000024460	Lsm7	100	93.137	ENSSPAG00000015221	lsm7	99	93.137	Stegastes_partitus
ENSDORG00000024460	Lsm7	100	98.039	ENSSSCG00000013463	LSM7	100	98.039	Sus_scrofa
ENSDORG00000024460	Lsm7	99	95.050	ENSTGUG00000000067	LSM7	100	95.050	Taeniopygia_guttata
ENSDORG00000024460	Lsm7	100	93.137	ENSTRUG00000022913	lsm7	99	93.137	Takifugu_rubripes
ENSDORG00000024460	Lsm7	100	93.137	ENSTNIG00000015525	lsm7	99	93.137	Tetraodon_nigroviridis
ENSDORG00000024460	Lsm7	69	85.714	ENSTBEG00000016602	LSM7	100	85.714	Tupaia_belangeri
ENSDORG00000024460	Lsm7	99	99.010	ENSUAMG00000000912	LSM7	84	99.010	Ursus_americanus
ENSDORG00000024460	Lsm7	99	99.010	ENSUMAG00000006556	LSM7	79	99.010	Ursus_maritimus
ENSDORG00000024460	Lsm7	70	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSDORG00000024460	Lsm7	99	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSDORG00000024460	Lsm7	100	93.137	ENSXCOG00000002572	lsm7	100	93.137	Xiphophorus_couchianus
ENSDORG00000024460	Lsm7	100	94.118	ENSXMAG00000018630	lsm7	99	94.118	Xiphophorus_maculatus