EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000027271 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: DNA dC->dU-editing enzyme APOBEC-3-like
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 13069 bases
Position: chrKN672425.1:2954477-2967545
Accession: 105992068
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000022770	APOBEC_N	PF08210.11	2e-83	1	2
ENSDORP00000022770	APOBEC_N	PF08210.11	2e-83	2	2
ENSDORP00000023009	APOBEC_N	PF08210.11	1.4e-25	1	1
ENSDORP00000022770	APOBEC_C	PF05240.14	1.7e-58	1	2
ENSDORP00000022770	APOBEC_C	PF05240.14	1.7e-58	2	2
ENSDORP00000023009	APOBEC_C	PF05240.14	1.4e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000036667	-	1140	XM_013024877	ENSDORP00000022770	380 (aa)	XP_012880331	UPI000BAD0DCC
ENSDORT00000026569	-	1560	-	ENSDORP00000023009	95 (aa)	-	UPI000BAD094C

Gene Model

Click here to download ENSDORG00000027271's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000027271's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000027271	-	100	32.673	ENSDORG00000006447	Apobec2	77	33.702

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000027271	-	99	42.857	ENSG00000100298	APOBEC3H	99	50.811	Homo_sapiens
ENSDORG00000027271	-	100	52.174	ENSAMEG00000010818	-	95	39.573	Ailuropoda_melanoleuca
ENSDORG00000027271	-	82	52.880	ENSANAG00000025410	APOBEC3H	84	52.880	Aotus_nancymaae
ENSDORG00000027271	-	100	52.041	ENSBTAG00000007755	APOBEC3H	92	49.441	Bos_taurus
ENSDORG00000027271	-	81	49.730	ENSCJAG00000012524	APOBEC3H	91	49.655	Callithrix_jacchus
ENSDORG00000027271	-	92	51.685	ENSCAFG00000001361	APOBEC3Z3	95	51.685	Canis_familiaris
ENSDORG00000027271	-	92	51.124	ENSCAFG00020002584	-	99	51.124	Canis_lupus_dingo
ENSDORG00000027271	-	100	51.020	ENSCHIG00000026580	-	97	48.603	Capra_hircus
ENSDORG00000027271	-	86	57.542	ENSTSYG00000032894	-	100	57.542	Carlito_syrichta
ENSDORG00000027271	-	100	50.000	ENSCPOG00000009257	-	84	52.408	Cavia_porcellus
ENSDORG00000027271	-	87	50.811	ENSCCAG00000008525	APOBEC3H	92	50.811	Cebus_capucinus
ENSDORG00000027271	-	99	43.878	ENSCATG00000030302	APOBEC3H	99	51.351	Cercocebus_atys
ENSDORG00000027271	-	87	56.983	ENSCLAG00000016615	-	86	56.983	Chinchilla_lanigera
ENSDORG00000027271	-	91	52.973	ENSCSAG00000006371	APOBEC3H	85	52.973	Chlorocebus_sabaeus
ENSDORG00000027271	-	100	57.143	ENSCGRG00001022976	Apobec3	94	53.401	Cricetulus_griseus_chok1gshd
ENSDORG00000027271	-	100	57.143	ENSCGRG00000005621	Apobec3	94	53.401	Cricetulus_griseus_crigri
ENSDORG00000027271	-	100	43.878	ENSECAG00000007726	APOBEC3H	77	52.973	Equus_caballus
ENSDORG00000027271	-	100	45.918	ENSFCAG00000005251	APOBEC3Z3	95	53.933	Felis_catus
ENSDORG00000027271	-	92	52.717	ENSSTOG00000007125	-	86	52.717	Ictidomys_tridecemlineatus
ENSDORG00000027271	-	100	55.102	ENSJJAG00000016840	-	90	56.936	Jaculus_jaculus
ENSDORG00000027271	-	100	43.299	ENSLAFG00000027404	-	94	46.499	Loxodonta_africana
ENSDORG00000027271	-	91	52.973	ENSMFAG00000031827	APOBEC3H	90	52.973	Macaca_fascicularis
ENSDORG00000027271	-	91	52.973	ENSMMUG00000001016	APOBEC3H	91	51.724	Macaca_mulatta
ENSDORG00000027271	-	91	52.973	ENSMNEG00000039259	APOBEC3H	90	52.973	Macaca_nemestrina
ENSDORG00000027271	-	99	43.878	ENSMLEG00000033417	APOBEC3H	91	51.724	Mandrillus_leucophaeus
ENSDORG00000027271	-	100	55.102	ENSMAUG00000011683	Apobec3	97	52.525	Mesocricetus_auratus
ENSDORG00000027271	-	100	58.763	ENSMOCG00000021576	Apobec3	99	51.834	Microtus_ochrogaster
ENSDORG00000027271	-	100	53.061	MGP_CAROLIEiJ_G0020029	Apobec3	100	55.294	Mus_caroli
ENSDORG00000027271	-	100	54.082	ENSMUSG00000009585	Apobec3	100	56.471	Mus_musculus
ENSDORG00000027271	-	100	56.122	MGP_PahariEiJ_G0020031	-	97	51.654	Mus_pahari
ENSDORG00000027271	-	100	55.102	MGP_SPRETEiJ_G0020927	Apobec3	100	57.647	Mus_spretus
ENSDORG00000027271	-	100	47.674	ENSMPUG00000013239	-	95	47.059	Mustela_putorius_furo
ENSDORG00000027271	-	100	59.184	ENSNGAG00000018998	Apobec3	92	55.516	Nannospalax_galili
ENSDORG00000027271	-	99	42.857	ENSNLEG00000015218	-	85	50.811	Nomascus_leucogenys
ENSDORG00000027271	-	100	58.163	ENSOCUG00000023913	-	99	44.584	Oryctolagus_cuniculus
ENSDORG00000027271	-	100	53.061	ENSOARG00000016290	APOBEC3F	98	48.603	Ovis_aries
ENSDORG00000027271	-	99	42.857	ENSPPAG00000036522	APOBEC3H	98	51.892	Pan_paniscus
ENSDORG00000027271	-	100	45.918	ENSPPRG00000003675	-	95	44.253	Panthera_pardus
ENSDORG00000027271	-	87	54.494	ENSPPRG00000003941	-	90	54.494	Panthera_pardus
ENSDORG00000027271	-	87	54.494	ENSPTIG00000010283	-	90	54.494	Panthera_tigris_altaica
ENSDORG00000027271	-	99	42.857	ENSPTRG00000014390	APOBEC3H	98	51.892	Pan_troglodytes
ENSDORG00000027271	-	91	52.973	ENSPANG00000010774	APOBEC3H	94	50.811	Papio_anubis
ENSDORG00000027271	-	100	56.122	ENSPEMG00000000456	Apobec3	95	49.524	Peromyscus_maniculatus_bairdii
ENSDORG00000027271	-	99	40.816	ENSPPYG00000011834	-	85	50.811	Pongo_abelii
ENSDORG00000027271	-	100	39.796	ENSPCAG00000015655	-	99	43.333	Procavia_capensis
ENSDORG00000027271	-	100	45.918	ENSPVAG00000024267	-	96	47.244	Pteropus_vampyrus
ENSDORG00000027271	-	91	55.000	ENSPVAG00000009462	-	99	55.000	Pteropus_vampyrus
ENSDORG00000027271	-	100	47.959	ENSPVAG00000024161	-	95	49.194	Pteropus_vampyrus
ENSDORG00000027271	-	100	50.754	ENSRNOG00000016852	Apobec3	98	50.754	Rattus_norvegicus
ENSDORG00000027271	-	99	42.857	ENSRBIG00000029088	APOBEC3H	91	53.793	Rhinopithecus_bieti
ENSDORG00000027271	-	99	42.857	ENSRROG00000024699	APOBEC3H	91	53.103	Rhinopithecus_roxellana
ENSDORG00000027271	-	81	54.595	ENSSBOG00000030005	APOBEC3H	99	55.944	Saimiri_boliviensis_boliviensis
ENSDORG00000027271	-	100	50.000	ENSSSCG00000000091	APOBEC3B	93	45.918	Sus_scrofa
ENSDORG00000027271	-	100	39.796	ENSTBEG00000001532	-	99	52.601	Tupaia_belangeri
ENSDORG00000027271	-	100	42.857	ENSTTRG00000001266	-	100	51.381	Tursiops_truncatus
ENSDORG00000027271	-	92	51.795	ENSUAMG00000004427	-	86	51.795	Ursus_americanus
ENSDORG00000027271	-	97	53.846	ENSUMAG00000014435	-	91	53.591	Ursus_maritimus
ENSDORG00000027271	-	100	38.144	ENSVPAG00000011108	-	99	56.349	Vicugna_pacos
ENSDORG00000027271	-	82	53.846	ENSVVUG00000014624	-	58	53.846	Vulpes_vulpes