EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000027821 (Gene tree)
Gene ID: 105997934
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein A1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Plus strand
Length: 6191 bases
Position: chrKN672501.1:2167436-2173626
Accession: 105997934
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000018110	RRM_1	PF00076.22	1.5e-36	1	2
ENSDORP00000018110	RRM_1	PF00076.22	1.5e-36	2	2
ENSDORP00000026121	RRM_1	PF00076.22	2.5e-36	1	2
ENSDORP00000026121	RRM_1	PF00076.22	2.5e-36	2	2
ENSDORP00000018110	HnRNPA1	PF11627.8	1.5e-19	1	1
ENSDORP00000026121	HnRNPA1	PF11627.8	2.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000024663	-	3536	XM_013032514	ENSDORP00000026121	372 (aa)	XP_012887968	A0A1S3GGH5
ENSDORT00000032876	-	3380	XM_013032511	ENSDORP00000018110	320 (aa)	XP_012887965	A0A1S3GGN3

Gene Model

Click here to download ENSDORG00000027821's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000027821's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000027821	-	61	66.154	ENSDORG00000026661	-	87	55.488
ENSDORG00000027821	-	61	85.714	ENSDORG00000011155	-	56	88.525
ENSDORG00000027821	-	85	69.343	ENSDORG00000024966	-	94	69.048
ENSDORG00000027821	-	53	34.911	ENSDORG00000024157	-	58	34.066
ENSDORG00000027821	-	61	83.673	ENSDORG00000028671	-	88	68.421
ENSDORG00000027821	-	92	84.642	ENSDORG00000029266	-	100	84.642
ENSDORG00000027821	-	53	46.087	ENSDORG00000028440	-	100	46.087
ENSDORG00000027821	-	56	36.842	ENSDORG00000015481	-	81	36.364
ENSDORG00000027821	-	60	57.592	ENSDORG00000026425	-	51	59.551
ENSDORG00000027821	-	54	40.000	ENSDORG00000011015	Hnrnpab	61	39.548
ENSDORG00000027821	-	70	44.737	ENSDORG00000023540	Cirbp	51	41.860
ENSDORG00000027821	-	57	44.118	ENSDORG00000012507	Hnrnpd	64	43.860
ENSDORG00000027821	-	59	82.166	ENSDORG00000028230	-	95	63.014
ENSDORG00000027821	-	75	39.080	ENSDORG00000005610	Msi1	50	39.011
ENSDORG00000027821	-	86	71.014	ENSDORG00000005482	Hnrnpa2b1	94	63.438
ENSDORG00000027821	-	57	30.323	ENSDORG00000001067	Pabpc1l	56	30.323

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000027821	-	87	72.143	ENSAMEG00000002186	-	66	74.054	Ailuropoda_melanoleuca
ENSDORG00000027821	-	92	85.484	ENSANAG00000031918	-	65	85.484	Aotus_nancymaae
ENSDORG00000027821	-	100	86.335	ENSCAFG00000006327	-	100	89.130	Canis_familiaris
ENSDORG00000027821	-	94	87.333	ENSCAFG00000017180	-	94	87.333	Canis_familiaris
ENSDORG00000027821	-	87	88.849	ENSCHIG00000020351	-	93	89.041	Capra_hircus
ENSDORG00000027821	-	94	72.848	ENSDNOG00000048335	-	94	73.510	Dasypus_novemcinctus
ENSDORG00000027821	-	100	77.358	ENSDNOG00000030945	-	91	72.112	Dasypus_novemcinctus
ENSDORG00000027821	-	93	50.505	ENSETEG00000010244	-	86	72.500	Echinops_telfairi
ENSDORG00000027821	-	67	64.651	ENSETEG00000004129	-	69	66.667	Echinops_telfairi
ENSDORG00000027821	-	100	99.062	ENSFDAG00000021342	-	100	99.062	Fukomys_damarensis
ENSDORG00000027821	-	100	99.062	ENSHGLG00000003139	HNRNPA1	100	99.062	Heterocephalus_glaber_female
ENSDORG00000027821	-	68	100.000	ENSHGLG00100017719	-	94	75.932	Heterocephalus_glaber_male
ENSDORG00000027821	-	100	99.062	ENSHGLG00100015974	HNRNPA1	100	99.062	Heterocephalus_glaber_male
ENSDORG00000027821	-	80	78.210	ENSSTOG00000034519	-	80	78.210	Ictidomys_tridecemlineatus
ENSDORG00000027821	-	100	66.756	ENSMNEG00000038539	-	97	62.647	Macaca_nemestrina
ENSDORG00000027821	-	78	75.000	ENSMPUG00000008269	-	69	79.121	Mustela_putorius_furo
ENSDORG00000027821	-	99	72.087	ENSMPUG00000003127	-	55	82.703	Mustela_putorius_furo
ENSDORG00000027821	-	90	67.365	ENSNLEG00000032512	-	95	63.977	Nomascus_leucogenys
ENSDORG00000027821	-	61	97.938	ENSOCUG00000028124	-	52	98.942	Oryctolagus_cuniculus
ENSDORG00000027821	-	88	71.731	ENSPTIG00000013949	-	92	71.731	Panthera_tigris_altaica
ENSDORG00000027821	-	60	93.960	ENSPANG00000017095	-	100	87.636	Papio_anubis
ENSDORG00000027821	-	53	89.899	ENSSFOG00015007588	-	91	69.909	Scleropages_formosus
ENSDORG00000027821	-	89	90.559	ENSTBEG00000012511	-	100	90.559	Tupaia_belangeri
ENSDORG00000027821	-	95	60.841	ENSTBEG00000007607	-	72	70.732	Tupaia_belangeri