EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDORG00000028509 (Gene tree)
Gene ID: 105981653
Gene Symbol: -
Alias: -
Full Name: copine 1
Gene Type: protein_coding
Species: Dipodomys_ordii
Status: putative
Strand: Minus strand
Length: 45878 bases
Position: chrKN672359.1:16215106-16260983
Accession: 105981653
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDORP00000026012	RRM_1	PF00076.22	1.9e-30	1	3
ENSDORP00000026012	RRM_1	PF00076.22	1.9e-30	2	3
ENSDORP00000026012	RRM_1	PF00076.22	1.9e-30	3	3
ENSDORP00000021255	RRM_1	PF00076.22	2.7e-30	1	3
ENSDORP00000021255	RRM_1	PF00076.22	2.7e-30	2	3
ENSDORP00000021255	RRM_1	PF00076.22	2.7e-30	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDORT00000026720	-	1800	XM_013010879	ENSDORP00000020575	538 (aa)	XP_012866333	A0A1S3EPL8
ENSDORT00000025242	-	2802	-	ENSDORP00000026012	933 (aa)	-	UPI000BAD1775
ENSDORT00000031379	-	978	-	ENSDORP00000016411	326 (aa)	-	UPI000BAD20BA
ENSDORT00000023639	-	1921	-	ENSDORP00000019309	54 (aa)	-	UPI000BAD22CE
ENSDORT00000025309	-	3578	XM_013010878	ENSDORP00000021255	990 (aa)	XP_012866332	A0A1S3ESC0

Gene Model

Click here to download ENSDORG00000028509's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDORG00000028509's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDORG00000028509	-	100	93.535	ENSDORG00000000606	-	100	93.535
ENSDORG00000028509	-	55	72.414	ENSDORG00000024034	-	54	72.414

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDORG00000028509	-	100	93.269	ENSG00000244462	RBM12	100	97.902	Homo_sapiens
ENSDORG00000028509	-	100	94.748	ENSAMEG00000019189	RBM12	100	93.404	Ailuropoda_melanoleuca
ENSDORG00000028509	-	100	76.784	ENSACAG00000006330	RBM12	98	76.677	Anolis_carolinensis
ENSDORG00000028509	-	100	93.476	ENSANAG00000032596	RBM12	98	92.994	Aotus_nancymaae
ENSDORG00000028509	-	100	92.034	ENSBTAG00000044015	RBM12	100	92.042	Bos_taurus
ENSDORG00000028509	-	100	94.641	ENSCAFG00000008256	RBM12	98	96.937	Canis_familiaris
ENSDORG00000028509	-	100	94.212	ENSCAFG00020005650	RBM12	100	93.797	Canis_lupus_dingo
ENSDORG00000028509	-	100	93.140	ENSCHIG00000024592	RBM12	100	92.743	Capra_hircus
ENSDORG00000028509	-	100	92.712	ENSTSYG00000030563	RBM12	98	92.283	Carlito_syrichta
ENSDORG00000028509	-	85	91.371	ENSCAPG00000006176	RBM12	96	90.834	Cavia_aperea
ENSDORG00000028509	-	100	91.391	ENSCPOG00000035170	RBM12	99	93.614	Cavia_porcellus
ENSDORG00000028509	-	93	89.474	ENSCCAG00000035899	-	100	67.880	Cebus_capucinus
ENSDORG00000028509	-	96	91.489	ENSCCAG00000036056	-	98	90.111	Cebus_capucinus
ENSDORG00000028509	-	100	93.269	ENSCATG00000030934	RBM12	98	93.910	Cercocebus_atys
ENSDORG00000028509	-	100	93.355	ENSCLAG00000017230	RBM12	100	91.313	Chinchilla_lanigera
ENSDORG00000028509	-	100	92.949	ENSCANG00000030552	RBM12	98	93.590	Colobus_angolensis_palliatus
ENSDORG00000028509	-	100	90.040	ENSCGRG00001021144	Rbm12	100	89.638	Cricetulus_griseus_chok1gshd
ENSDORG00000028509	-	100	90.040	ENSCGRG00000012719	Rbm12	100	89.638	Cricetulus_griseus_crigri
ENSDORG00000028509	-	100	94.212	ENSECAG00000021997	RBM12	100	94.212	Equus_caballus
ENSDORG00000028509	-	59	96.237	ENSEEUG00000008858	-	56	96.237	Erinaceus_europaeus
ENSDORG00000028509	-	100	94.427	ENSFDAG00000014663	RBM12	100	94.319	Fukomys_damarensis
ENSDORG00000028509	-	100	79.443	ENSGALG00000030253	RBM12	100	79.837	Gallus_gallus
ENSDORG00000028509	-	100	93.056	ENSGGOG00000028500	RBM12	98	93.697	Gorilla_gorilla
ENSDORG00000028509	-	100	94.641	ENSHGLG00000013208	RBM12	100	94.641	Heterocephalus_glaber_female
ENSDORG00000028509	-	90	96.552	ENSHGLG00100019158	RBM12	90	96.552	Heterocephalus_glaber_male
ENSDORG00000028509	-	100	91.474	ENSSTOG00000019739	RBM12	100	90.947	Ictidomys_tridecemlineatus
ENSDORG00000028509	-	100	93.783	ENSLAFG00000010341	RBM12	100	93.369	Loxodonta_africana
ENSDORG00000028509	-	100	93.269	ENSMFAG00000032583	RBM12	98	93.910	Macaca_fascicularis
ENSDORG00000028509	-	100	93.376	ENSMMUG00000020960	CPNE1	100	94.017	Macaca_mulatta
ENSDORG00000028509	-	100	93.376	ENSMNEG00000045365	RBM12	98	94.017	Macaca_nemestrina
ENSDORG00000028509	-	100	93.376	ENSMLEG00000032492	RBM12	98	94.017	Mandrillus_leucophaeus
ENSDORG00000028509	-	100	77.623	ENSMGAG00000001502	RBM12	100	79.973	Meleagris_gallopavo
ENSDORG00000028509	-	100	90.845	ENSMAUG00000012800	Rbm12	100	90.232	Mesocricetus_auratus
ENSDORG00000028509	-	100	92.605	ENSMICG00000032761	-	98	92.712	Microcebus_murinus
ENSDORG00000028509	-	100	82.609	ENSMICG00000029540	-	94	87.634	Microcebus_murinus
ENSDORG00000028509	-	100	89.368	ENSMOCG00000012950	Rbm12	100	89.067	Microtus_ochrogaster
ENSDORG00000028509	-	100	84.459	ENSMODG00000001591	RBM12	97	90.549	Monodelphis_domestica
ENSDORG00000028509	-	100	88.020	MGP_CAROLIEiJ_G0024551	Rbm12	97	93.333	Mus_caroli
ENSDORG00000028509	-	100	89.034	ENSMUSG00000089824	Rbm12	100	88.632	Mus_musculus
ENSDORG00000028509	-	100	88.515	MGP_PahariEiJ_G0025996	Rbm12	100	88.515	Mus_pahari
ENSDORG00000028509	-	100	88.259	MGP_SPRETEiJ_G0025473	Rbm12	100	88.147	Mus_spretus
ENSDORG00000028509	-	100	94.212	ENSMPUG00000017789	-	100	92.979	Mustela_putorius_furo
ENSDORG00000028509	-	100	93.998	ENSMLUG00000011217	RBM12	98	93.998	Myotis_lucifugus
ENSDORG00000028509	-	100	91.658	ENSNGAG00000015846	Rbm12	100	91.156	Nannospalax_galili
ENSDORG00000028509	-	100	93.162	ENSNLEG00000010268	RBM12	98	92.789	Nomascus_leucogenys
ENSDORG00000028509	-	100	84.137	ENSMEUG00000007621	RBM12	73	88.305	Notamacropus_eugenii
ENSDORG00000028509	-	100	92.226	ENSOPRG00000005687	RBM12	100	92.226	Ochotona_princeps
ENSDORG00000028509	-	100	88.328	ENSODEG00000013870	RBM12	100	87.678	Octodon_degus
ENSDORG00000028509	-	100	93.269	ENSPPAG00000040719	RBM12	98	93.910	Pan_paniscus
ENSDORG00000028509	-	100	93.269	ENSPTRG00000040708	-	98	93.910	Pan_troglodytes
ENSDORG00000028509	-	100	93.269	ENSPTRG00000013446	RBM12	98	93.910	Pan_troglodytes
ENSDORG00000028509	-	100	93.376	ENSPANG00000020003	CPNE1	98	94.017	Papio_anubis
ENSDORG00000028509	-	88	86.308	ENSPSIG00000007369	RBM12	68	82.776	Pelodiscus_sinensis
ENSDORG00000028509	-	100	89.641	ENSPEMG00000017769	Rbm12	100	88.955	Peromyscus_maniculatus_bairdii
ENSDORG00000028509	-	59	78.571	ENSPFOG00000023551	rbm12	98	78.873	Poecilia_formosa
ENSDORG00000028509	-	100	93.284	ENSPPYG00000010960	RBM12	100	93.497	Pongo_abelii
ENSDORG00000028509	-	100	91.640	ENSPCAG00000008653	RBM12	100	89.195	Procavia_capensis
ENSDORG00000028509	-	100	93.583	ENSPCOG00000023724	RBM12	98	93.703	Propithecus_coquereli
ENSDORG00000028509	-	100	92.926	ENSPVAG00000014937	RBM12	100	93.569	Pteropus_vampyrus
ENSDORG00000028509	-	76	91.631	ENSRNOG00000019723	Rbm12	96	92.587	Rattus_norvegicus
ENSDORG00000028509	-	76	91.631	ENSRNOG00000049913	LOC100910990	96	92.587	Rattus_norvegicus
ENSDORG00000028509	-	100	93.162	ENSRBIG00000042965	RBM12	98	93.803	Rhinopithecus_bieti
ENSDORG00000028509	-	100	93.162	ENSRROG00000037485	RBM12	98	93.803	Rhinopithecus_roxellana
ENSDORG00000028509	-	100	93.262	ENSSBOG00000027633	RBM12	98	93.690	Saimiri_boliviensis_boliviensis
ENSDORG00000028509	-	100	84.673	ENSSHAG00000018585	RBM12	99	90.549	Sarcophilus_harrisii
ENSDORG00000028509	-	100	94.652	ENSSSCG00000036156	RBM12	100	94.652	Sus_scrofa
ENSDORG00000028509	-	100	79.636	ENSTGUG00000003002	RBM12	99	85.671	Taeniopygia_guttata
ENSDORG00000028509	-	100	94.105	ENSTTRG00000017035	RBM12	100	93.397	Tursiops_truncatus
ENSDORG00000028509	-	100	94.231	ENSUAMG00000010430	RBM12	100	92.994	Ursus_americanus
ENSDORG00000028509	-	89	100.000	ENSVPAG00000003812	RBM12	88	100.000	Vicugna_pacos
ENSDORG00000028509	-	100	59.220	ENSXETG00000033541	RBM12	71	62.740	Xenopus_tropicalis