EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEASG00005001533 (Gene tree)
Gene ID: -
Gene Symbol: LSM6
Alias: YDR378C
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Minus strand
Length: 4171 bases
Position: chrPSZQ01008133.1:15261755-15265925
Accession: 17017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005001942	LSM	PF01423.22	3.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005002146	LSM6-201	820	-	ENSEASP00005001942	96 (aa)	-	-

Gene Model

Click here to download ENSEASG00005001533's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005001533's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005001533	LSM6	72	100.000	ENSG00000164167	LSM6	86	100.000	Homo_sapiens
ENSEASG00005001533	LSM6	72	97.101	ENSAPOG00000019832	lsm6	86	97.101	Acanthochromis_polyacanthus
ENSEASG00005001533	LSM6	72	100.000	ENSAMEG00000016671	LSM6	86	100.000	Ailuropoda_melanoleuca
ENSEASG00005001533	LSM6	72	97.101	ENSACIG00000016711	lsm6	86	97.101	Amphilophus_citrinellus
ENSEASG00005001533	LSM6	72	97.101	ENSAPEG00000023992	lsm6	99	87.179	Amphiprion_percula
ENSEASG00005001533	LSM6	72	97.101	ENSATEG00000012610	lsm6	86	97.101	Anabas_testudineus
ENSEASG00005001533	LSM6	69	100.000	ENSAPLG00000012594	LSM6	85	100.000	Anas_platyrhynchos
ENSEASG00005001533	LSM6	72	100.000	ENSACAG00000004004	LSM6	86	100.000	Anolis_carolinensis
ENSEASG00005001533	LSM6	68	90.769	ENSANAG00000021839	-	87	90.769	Aotus_nancymaae
ENSEASG00005001533	LSM6	72	100.000	ENSANAG00000030568	-	86	100.000	Aotus_nancymaae
ENSEASG00005001533	LSM6	72	97.101	ENSACLG00000025621	lsm6	86	97.101	Astatotilapia_calliptera
ENSEASG00005001533	LSM6	72	97.101	ENSAMXG00000038738	lsm6	86	97.101	Astyanax_mexicanus
ENSEASG00005001533	LSM6	72	92.754	ENSBTAG00000052085	-	86	92.754	Bos_taurus
ENSEASG00005001533	LSM6	72	100.000	ENSBTAG00000014060	LSM6	86	100.000	Bos_taurus
ENSEASG00005001533	LSM6	82	74.684	WBGene00003080	lsm-6	97	74.684	Caenorhabditis_elegans
ENSEASG00005001533	LSM6	72	100.000	ENSCJAG00000002482	LSM6	86	100.000	Callithrix_jacchus
ENSEASG00005001533	LSM6	72	100.000	ENSCAFG00000007738	LSM6	86	100.000	Canis_familiaris
ENSEASG00005001533	LSM6	72	100.000	ENSCAFG00020025902	LSM6	86	100.000	Canis_lupus_dingo
ENSEASG00005001533	LSM6	72	81.159	ENSCHIG00000024198	-	80	81.159	Capra_hircus
ENSEASG00005001533	LSM6	72	100.000	ENSCHIG00000012864	-	97	100.000	Capra_hircus
ENSEASG00005001533	LSM6	72	100.000	ENSCHIG00000010334	-	86	100.000	Capra_hircus
ENSEASG00005001533	LSM6	67	92.188	ENSTSYG00000012759	-	84	92.188	Carlito_syrichta
ENSEASG00005001533	LSM6	72	100.000	ENSTSYG00000026972	LSM6	86	100.000	Carlito_syrichta
ENSEASG00005001533	LSM6	72	100.000	ENSCAPG00000008104	LSM6	86	100.000	Cavia_aperea
ENSEASG00005001533	LSM6	68	96.923	ENSCAPG00000011179	-	100	96.923	Cavia_aperea
ENSEASG00005001533	LSM6	72	100.000	ENSCPOG00000032655	LSM6	86	100.000	Cavia_porcellus
ENSEASG00005001533	LSM6	72	100.000	ENSCCAG00000036437	LSM6	86	100.000	Cebus_capucinus
ENSEASG00005001533	LSM6	72	98.551	ENSCCAG00000020665	-	86	98.551	Cebus_capucinus
ENSEASG00005001533	LSM6	72	100.000	ENSCATG00000002770	-	86	100.000	Cercocebus_atys
ENSEASG00005001533	LSM6	64	83.607	ENSCATG00000038799	-	80	83.607	Cercocebus_atys
ENSEASG00005001533	LSM6	72	79.710	ENSCLAG00000005685	-	97	79.710	Chinchilla_lanigera
ENSEASG00005001533	LSM6	72	100.000	ENSCLAG00000005495	LSM6	86	100.000	Chinchilla_lanigera
ENSEASG00005001533	LSM6	72	100.000	ENSCSAG00000003421	LSM6	86	100.000	Chlorocebus_sabaeus
ENSEASG00005001533	LSM6	55	100.000	ENSCHOG00000003420	LSM6	84	100.000	Choloepus_hoffmanni
ENSEASG00005001533	LSM6	72	100.000	ENSCPBG00000027472	LSM6	73	100.000	Chrysemys_picta_bellii
ENSEASG00005001533	LSM6	69	98.485	ENSCING00000019152	-	80	98.485	Ciona_intestinalis
ENSEASG00005001533	LSM6	69	100.000	ENSCSAVG00000002065	-	80	100.000	Ciona_savignyi
ENSEASG00005001533	LSM6	64	81.967	ENSCANG00000035214	-	80	81.967	Colobus_angolensis_palliatus
ENSEASG00005001533	LSM6	72	100.000	ENSCANG00000041263	-	86	100.000	Colobus_angolensis_palliatus
ENSEASG00005001533	LSM6	72	100.000	ENSCANG00000006849	-	86	100.000	Colobus_angolensis_palliatus
ENSEASG00005001533	LSM6	72	100.000	ENSCGRG00001017142	Lsm6	86	100.000	Cricetulus_griseus_chok1gshd
ENSEASG00005001533	LSM6	72	100.000	ENSCGRG00000008320	Lsm6	86	100.000	Cricetulus_griseus_crigri
ENSEASG00005001533	LSM6	72	97.101	ENSCSEG00000000423	lsm6	86	97.101	Cynoglossus_semilaevis
ENSEASG00005001533	LSM6	72	97.101	ENSCVAG00000001592	lsm6	86	97.101	Cyprinodon_variegatus
ENSEASG00005001533	LSM6	72	97.101	ENSDARG00000036995	lsm6	86	97.101	Danio_rerio
ENSEASG00005001533	LSM6	100	87.500	ENSDNOG00000040186	-	100	87.500	Dasypus_novemcinctus
ENSEASG00005001533	LSM6	72	98.551	ENSDNOG00000044848	-	86	98.551	Dasypus_novemcinctus
ENSEASG00005001533	LSM6	72	100.000	ENSDORG00000000933	Lsm6	86	100.000	Dipodomys_ordii
ENSEASG00005001533	LSM6	69	84.848	FBgn0034564	CG9344	84	84.848	Drosophila_melanogaster
ENSEASG00005001533	LSM6	72	100.000	ENSEBUG00000017073	lsm6	86	100.000	Eptatretus_burgeri
ENSEASG00005001533	LSM6	72	100.000	ENSECAG00000021036	LSM6	86	100.000	Equus_caballus
ENSEASG00005001533	LSM6	71	67.647	ENSEEUG00000002101	LSM6	86	67.647	Erinaceus_europaeus
ENSEASG00005001533	LSM6	72	97.101	ENSELUG00000014301	LSM6	86	97.101	Esox_lucius
ENSEASG00005001533	LSM6	72	100.000	ENSFCAG00000003047	LSM6	86	100.000	Felis_catus
ENSEASG00005001533	LSM6	72	100.000	ENSFALG00000005509	LSM6	79	100.000	Ficedula_albicollis
ENSEASG00005001533	LSM6	72	100.000	ENSFDAG00000020913	-	86	100.000	Fukomys_damarensis
ENSEASG00005001533	LSM6	72	88.406	ENSFDAG00000019073	-	86	88.406	Fukomys_damarensis
ENSEASG00005001533	LSM6	73	97.143	ENSFHEG00000007948	lsm6	93	97.143	Fundulus_heteroclitus
ENSEASG00005001533	LSM6	72	97.101	ENSGMOG00000015550	lsm6	86	97.101	Gadus_morhua
ENSEASG00005001533	LSM6	72	100.000	ENSGALG00000009985	LSM6	86	100.000	Gallus_gallus
ENSEASG00005001533	LSM6	72	97.101	ENSGAFG00000017763	lsm6	86	97.101	Gambusia_affinis
ENSEASG00005001533	LSM6	72	97.101	ENSGACG00000017223	lsm6	86	97.101	Gasterosteus_aculeatus
ENSEASG00005001533	LSM6	72	100.000	ENSGAGG00000020980	LSM6	86	100.000	Gopherus_agassizii
ENSEASG00005001533	LSM6	72	100.000	ENSGGOG00000001310	LSM6	86	100.000	Gorilla_gorilla
ENSEASG00005001533	LSM6	72	97.101	ENSHBUG00000008618	lsm6	86	97.101	Haplochromis_burtoni
ENSEASG00005001533	LSM6	72	100.000	ENSHGLG00000000205	LSM6	86	100.000	Heterocephalus_glaber_female
ENSEASG00005001533	LSM6	72	100.000	ENSHGLG00100014341	LSM6	86	100.000	Heterocephalus_glaber_male
ENSEASG00005001533	LSM6	72	97.101	ENSHCOG00000005591	lsm6	86	97.101	Hippocampus_comes
ENSEASG00005001533	LSM6	72	95.652	ENSIPUG00000004508	lsm6	86	95.652	Ictalurus_punctatus
ENSEASG00005001533	LSM6	72	100.000	ENSSTOG00000002678	LSM6	86	100.000	Ictidomys_tridecemlineatus
ENSEASG00005001533	LSM6	72	100.000	ENSJJAG00000013845	-	86	100.000	Jaculus_jaculus
ENSEASG00005001533	LSM6	72	89.855	ENSJJAG00000011211	-	86	89.855	Jaculus_jaculus
ENSEASG00005001533	LSM6	69	75.758	ENSJJAG00000016942	-	82	75.758	Jaculus_jaculus
ENSEASG00005001533	LSM6	72	97.101	ENSKMAG00000004105	lsm6	86	97.101	Kryptolebias_marmoratus
ENSEASG00005001533	LSM6	72	97.101	ENSLBEG00000018441	lsm6	86	97.101	Labrus_bergylta
ENSEASG00005001533	LSM6	72	100.000	ENSLACG00000006937	LSM6	86	100.000	Latimeria_chalumnae
ENSEASG00005001533	LSM6	72	97.101	ENSLOCG00000008852	lsm6	86	97.101	Lepisosteus_oculatus
ENSEASG00005001533	LSM6	72	95.652	ENSLOCG00000017683	-	86	95.652	Lepisosteus_oculatus
ENSEASG00005001533	LSM6	72	100.000	ENSLAFG00000001952	LSM6	86	100.000	Loxodonta_africana
ENSEASG00005001533	LSM6	72	100.000	ENSMFAG00000033073	LSM6	86	100.000	Macaca_fascicularis
ENSEASG00005001533	LSM6	64	85.246	ENSMNEG00000040412	-	80	85.246	Macaca_nemestrina
ENSEASG00005001533	LSM6	72	100.000	ENSMNEG00000034820	-	86	100.000	Macaca_nemestrina
ENSEASG00005001533	LSM6	72	100.000	ENSMLEG00000035153	LSM6	86	100.000	Mandrillus_leucophaeus
ENSEASG00005001533	LSM6	72	97.101	ENSMAMG00000014029	lsm6	86	97.101	Mastacembelus_armatus
ENSEASG00005001533	LSM6	72	97.101	ENSMZEG00005009146	lsm6	86	97.101	Maylandia_zebra
ENSEASG00005001533	LSM6	72	100.000	ENSMGAG00000003802	LSM6	86	100.000	Meleagris_gallopavo
ENSEASG00005001533	LSM6	72	100.000	ENSMAUG00000014938	Lsm6	86	100.000	Mesocricetus_auratus
ENSEASG00005001533	LSM6	72	98.551	ENSMICG00000047411	-	81	98.551	Microcebus_murinus
ENSEASG00005001533	LSM6	72	100.000	ENSMICG00000042599	LSM6	86	100.000	Microcebus_murinus
ENSEASG00005001533	LSM6	72	100.000	ENSMOCG00000020049	Lsm6	86	100.000	Microtus_ochrogaster
ENSEASG00005001533	LSM6	86	80.723	ENSMMOG00000007379	-	100	80.723	Mola_mola
ENSEASG00005001533	LSM6	72	97.101	ENSMMOG00000005470	lsm6	86	97.101	Mola_mola
ENSEASG00005001533	LSM6	72	100.000	ENSMODG00000000526	LSM6	86	100.000	Monodelphis_domestica
ENSEASG00005001533	LSM6	72	97.101	ENSMALG00000002419	lsm6	86	97.101	Monopterus_albus
ENSEASG00005001533	LSM6	72	100.000	MGP_CAROLIEiJ_G0031245	Lsm6	86	100.000	Mus_caroli
ENSEASG00005001533	LSM6	72	100.000	ENSMUSG00000031683	Lsm6	86	100.000	Mus_musculus
ENSEASG00005001533	LSM6	72	100.000	MGP_PahariEiJ_G0022851	Lsm6	86	100.000	Mus_pahari
ENSEASG00005001533	LSM6	72	100.000	MGP_SPRETEiJ_G0032365	Lsm6	86	100.000	Mus_spretus
ENSEASG00005001533	LSM6	72	100.000	ENSMPUG00000006936	LSM6	80	100.000	Mustela_putorius_furo
ENSEASG00005001533	LSM6	72	100.000	ENSMLUG00000026355	LSM6	86	100.000	Myotis_lucifugus
ENSEASG00005001533	LSM6	72	100.000	ENSNGAG00000019116	Lsm6	86	100.000	Nannospalax_galili
ENSEASG00005001533	LSM6	99	75.758	ENSNBRG00000004887	lsm6	86	97.101	Neolamprologus_brichardi
ENSEASG00005001533	LSM6	72	100.000	ENSNLEG00000005584	LSM6	86	100.000	Nomascus_leucogenys
ENSEASG00005001533	LSM6	72	100.000	ENSOPRG00000011199	LSM6	87	100.000	Ochotona_princeps
ENSEASG00005001533	LSM6	72	98.551	ENSODEG00000019419	-	86	98.551	Octodon_degus
ENSEASG00005001533	LSM6	72	98.551	ENSODEG00000002307	-	86	98.551	Octodon_degus
ENSEASG00005001533	LSM6	72	88.406	ENSODEG00000018684	-	90	88.406	Octodon_degus
ENSEASG00005001533	LSM6	72	97.101	ENSODEG00000020420	-	86	97.101	Octodon_degus
ENSEASG00005001533	LSM6	72	97.101	ENSONIG00000010005	lsm6	86	97.101	Oreochromis_niloticus
ENSEASG00005001533	LSM6	70	70.149	ENSOANG00000006895	-	86	70.149	Ornithorhynchus_anatinus
ENSEASG00005001533	LSM6	70	70.149	ENSOANG00000006894	-	86	70.149	Ornithorhynchus_anatinus
ENSEASG00005001533	LSM6	72	95.652	ENSORLG00000024158	lsm6	86	95.652	Oryzias_latipes
ENSEASG00005001533	LSM6	84	85.185	ENSORLG00020017383	lsm6	100	85.185	Oryzias_latipes_hni
ENSEASG00005001533	LSM6	72	95.652	ENSORLG00015016903	lsm6	86	95.652	Oryzias_latipes_hsok
ENSEASG00005001533	LSM6	72	97.101	ENSOMEG00000000074	lsm6	86	97.101	Oryzias_melastigma
ENSEASG00005001533	LSM6	72	100.000	ENSOGAG00000026665	-	86	100.000	Otolemur_garnettii
ENSEASG00005001533	LSM6	72	100.000	ENSOGAG00000033153	-	86	100.000	Otolemur_garnettii
ENSEASG00005001533	LSM6	80	98.701	ENSOARG00000008509	-	99	98.701	Ovis_aries
ENSEASG00005001533	LSM6	72	92.754	ENSOARG00000011641	-	80	92.754	Ovis_aries
ENSEASG00005001533	LSM6	72	100.000	ENSPPAG00000037929	LSM6	86	100.000	Pan_paniscus
ENSEASG00005001533	LSM6	72	100.000	ENSPPRG00000012806	LSM6	86	100.000	Panthera_pardus
ENSEASG00005001533	LSM6	72	100.000	ENSPTIG00000019769	LSM6	86	100.000	Panthera_tigris_altaica
ENSEASG00005001533	LSM6	72	100.000	ENSPTRG00000016488	LSM6	86	100.000	Pan_troglodytes
ENSEASG00005001533	LSM6	72	100.000	ENSPANG00000006552	LSM6	86	100.000	Papio_anubis
ENSEASG00005001533	LSM6	72	97.101	ENSPKIG00000016176	lsm6	86	97.101	Paramormyrops_kingsleyae
ENSEASG00005001533	LSM6	72	100.000	ENSPSIG00000016942	LSM6	86	100.000	Pelodiscus_sinensis
ENSEASG00005001533	LSM6	72	97.101	ENSPMGG00000018004	lsm6	86	97.101	Periophthalmus_magnuspinnatus
ENSEASG00005001533	LSM6	72	100.000	ENSPEMG00000012410	Lsm6	86	100.000	Peromyscus_maniculatus_bairdii
ENSEASG00005001533	LSM6	72	100.000	ENSPMAG00000006949	lsm6	86	100.000	Petromyzon_marinus
ENSEASG00005001533	LSM6	86	89.286	ENSPCIG00000023469	LSM6	98	89.286	Phascolarctos_cinereus
ENSEASG00005001533	LSM6	72	97.101	ENSPFOG00000008881	lsm6	86	97.101	Poecilia_formosa
ENSEASG00005001533	LSM6	72	97.101	ENSPLAG00000003202	lsm6	86	97.101	Poecilia_latipinna
ENSEASG00005001533	LSM6	72	97.101	ENSPMEG00000004000	lsm6	86	97.101	Poecilia_mexicana
ENSEASG00005001533	LSM6	72	97.101	ENSPREG00000023235	lsm6	86	97.101	Poecilia_reticulata
ENSEASG00005001533	LSM6	72	100.000	ENSPPYG00000015105	LSM6	86	100.000	Pongo_abelii
ENSEASG00005001533	LSM6	72	100.000	ENSPCOG00000013899	LSM6	86	100.000	Propithecus_coquereli
ENSEASG00005001533	LSM6	73	97.143	ENSPNYG00000012614	lsm6	86	97.143	Pundamilia_nyererei
ENSEASG00005001533	LSM6	72	97.101	ENSPNAG00000018779	lsm6	86	97.101	Pygocentrus_nattereri
ENSEASG00005001533	LSM6	72	100.000	ENSRNOG00000030374	Lsm6	86	100.000	Rattus_norvegicus
ENSEASG00005001533	LSM6	72	100.000	ENSRNOG00000049370	LOC100360750	86	100.000	Rattus_norvegicus
ENSEASG00005001533	LSM6	72	100.000	ENSRBIG00000027878	LSM6	86	100.000	Rhinopithecus_bieti
ENSEASG00005001533	LSM6	72	100.000	ENSRROG00000024868	LSM6	86	100.000	Rhinopithecus_roxellana
ENSEASG00005001533	LSM6	70	40.845	YDR378C	-	81	42.857	Saccharomyces_cerevisiae
ENSEASG00005001533	LSM6	72	100.000	ENSSBOG00000021229	-	86	100.000	Saimiri_boliviensis_boliviensis
ENSEASG00005001533	LSM6	72	71.014	ENSSBOG00000028103	-	84	71.014	Saimiri_boliviensis_boliviensis
ENSEASG00005001533	LSM6	72	97.101	ENSSFOG00015016480	lsm6	86	97.101	Scleropages_formosus
ENSEASG00005001533	LSM6	72	97.101	ENSSMAG00000004550	lsm6	90	97.101	Scophthalmus_maximus
ENSEASG00005001533	LSM6	73	97.143	ENSSLDG00000004136	-	60	97.143	Seriola_lalandi_dorsalis
ENSEASG00005001533	LSM6	72	97.101	ENSSLDG00000020533	lsm6	72	97.101	Seriola_lalandi_dorsalis
ENSEASG00005001533	LSM6	72	100.000	ENSSPUG00000008657	LSM6	86	100.000	Sphenodon_punctatus
ENSEASG00005001533	LSM6	72	97.101	ENSSPAG00000003246	lsm6	86	97.101	Stegastes_partitus
ENSEASG00005001533	LSM6	72	100.000	ENSSSCG00000035973	LSM6	86	100.000	Sus_scrofa
ENSEASG00005001533	LSM6	72	100.000	ENSTGUG00000002663	LSM6	86	100.000	Taeniopygia_guttata
ENSEASG00005001533	LSM6	72	97.101	ENSTRUG00000023398	lsm6	86	97.101	Takifugu_rubripes
ENSEASG00005001533	LSM6	72	97.101	ENSTNIG00000017725	lsm6	86	97.101	Tetraodon_nigroviridis
ENSEASG00005001533	LSM6	72	100.000	ENSTTRG00000004609	LSM6	86	100.000	Tursiops_truncatus
ENSEASG00005001533	LSM6	100	85.714	ENSUAMG00000014213	LSM6	80	85.714	Ursus_americanus
ENSEASG00005001533	LSM6	100	85.714	ENSUMAG00000015727	LSM6	80	85.714	Ursus_maritimus
ENSEASG00005001533	LSM6	72	100.000	ENSVPAG00000006922	LSM6	86	100.000	Vicugna_pacos
ENSEASG00005001533	LSM6	72	100.000	ENSVVUG00000009254	LSM6	59	100.000	Vulpes_vulpes
ENSEASG00005001533	LSM6	72	100.000	ENSXETG00000023683	lsm6	86	100.000	Xenopus_tropicalis
ENSEASG00005001533	LSM6	72	97.101	ENSXMAG00000009606	lsm6	99	89.474	Xiphophorus_maculatus