EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEASG00005002487 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Plus strand
Length: 16370 bases
Position: chrPSZQ01001925.1:6521302-6537671
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005003212	zf-CCCH	PF00642.24	2e-20	1	2
ENSEASP00005003212	zf-CCCH	PF00642.24	2e-20	2	2
ENSEASP00005003212	zf-CCHC	PF00098.23	4.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005003515	CPSF4-201	1508	-	ENSEASP00005003212	244 (aa)	-	UPI00001C364E

Gene Model

Click here to download ENSEASG00005002487's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005002487's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEASG00005002487	CPSF4	67	67.073	ENSEASG00005018763	CPSF4L	99	67.073

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005002487	CPSF4	100	99.180	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSEASG00005002487	CPSF4	64	68.927	ENSAPOG00000004921	cpsf4	100	68.927	Acanthochromis_polyacanthus
ENSEASG00005002487	CPSF4	100	90.706	ENSAMEG00000006252	CPSF4	100	90.706	Ailuropoda_melanoleuca
ENSEASG00005002487	CPSF4	100	87.295	ENSACIG00000009248	cpsf4	100	87.295	Amphilophus_citrinellus
ENSEASG00005002487	CPSF4	100	81.509	ENSAOCG00000019616	cpsf4	100	81.509	Amphiprion_ocellaris
ENSEASG00005002487	CPSF4	100	81.509	ENSAPEG00000011679	cpsf4	100	81.509	Amphiprion_percula
ENSEASG00005002487	CPSF4	100	85.200	ENSATEG00000007010	cpsf4	100	85.425	Anabas_testudineus
ENSEASG00005002487	CPSF4	100	83.271	ENSACAG00000012941	CPSF4	89	82.900	Anolis_carolinensis
ENSEASG00005002487	CPSF4	100	89.963	ENSANAG00000021360	CPSF4	100	89.963	Aotus_nancymaae
ENSEASG00005002487	CPSF4	100	80.738	ENSACLG00000010374	cpsf4	100	80.738	Astatotilapia_calliptera
ENSEASG00005002487	CPSF4	100	79.630	ENSAMXG00000031647	cpsf4	100	80.741	Astyanax_mexicanus
ENSEASG00005002487	CPSF4	100	98.770	ENSBTAG00000002090	CPSF4	100	98.770	Bos_taurus
ENSEASG00005002487	CPSF4	100	89.963	ENSCJAG00000015826	CPSF4	100	89.963	Callithrix_jacchus
ENSEASG00005002487	CPSF4	100	90.335	ENSCAFG00000015036	CPSF4	100	90.335	Canis_familiaris
ENSEASG00005002487	CPSF4	100	84.015	ENSCAFG00020014462	CPSF4	100	84.015	Canis_lupus_dingo
ENSEASG00005002487	CPSF4	100	89.963	ENSCHIG00000014313	CPSF4	100	89.963	Capra_hircus
ENSEASG00005002487	CPSF4	88	92.593	ENSTSYG00000008195	-	99	92.000	Carlito_syrichta
ENSEASG00005002487	CPSF4	100	99.180	ENSTSYG00000005712	-	100	99.180	Carlito_syrichta
ENSEASG00005002487	CPSF4	100	90.612	ENSTSYG00000014604	-	100	90.612	Carlito_syrichta
ENSEASG00005002487	CPSF4	79	88.532	ENSCAPG00000013881	CPSF4	87	88.532	Cavia_aperea
ENSEASG00005002487	CPSF4	100	100.000	ENSCPOG00000001783	CPSF4	100	100.000	Cavia_porcellus
ENSEASG00005002487	CPSF4	100	89.963	ENSCCAG00000028291	CPSF4	100	89.963	Cebus_capucinus
ENSEASG00005002487	CPSF4	100	90.984	ENSCATG00000038440	CPSF4	100	89.963	Cercocebus_atys
ENSEASG00005002487	CPSF4	100	90.335	ENSCLAG00000007050	CPSF4	100	90.335	Chinchilla_lanigera
ENSEASG00005002487	CPSF4	100	89.963	ENSCSAG00000017795	CPSF4	100	89.963	Chlorocebus_sabaeus
ENSEASG00005002487	CPSF4	78	81.944	ENSCPBG00000020869	CPSF4	100	81.481	Chrysemys_picta_bellii
ENSEASG00005002487	CPSF4	68	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSEASG00005002487	CPSF4	96	56.299	ENSCING00000021080	-	97	56.299	Ciona_intestinalis
ENSEASG00005002487	CPSF4	96	52.650	ENSCSAVG00000011469	-	60	72.254	Ciona_savignyi
ENSEASG00005002487	CPSF4	100	90.984	ENSCANG00000019384	CPSF4	100	89.963	Colobus_angolensis_palliatus
ENSEASG00005002487	CPSF4	100	100.000	ENSCGRG00001024184	Cpsf4	100	100.000	Cricetulus_griseus_chok1gshd
ENSEASG00005002487	CPSF4	100	90.706	ENSCGRG00000013892	Cpsf4	100	90.706	Cricetulus_griseus_crigri
ENSEASG00005002487	CPSF4	100	80.000	ENSCSEG00000019055	cpsf4	100	80.000	Cynoglossus_semilaevis
ENSEASG00005002487	CPSF4	100	80.377	ENSCVAG00000016528	cpsf4	100	80.377	Cyprinodon_variegatus
ENSEASG00005002487	CPSF4	100	79.336	ENSDARG00000020217	cpsf4	100	79.705	Danio_rerio
ENSEASG00005002487	CPSF4	100	90.335	ENSDNOG00000006344	CPSF4	100	90.335	Dasypus_novemcinctus
ENSEASG00005002487	CPSF4	79	88.018	ENSDORG00000000742	Cpsf4	100	88.018	Dipodomys_ordii
ENSEASG00005002487	CPSF4	100	51.505	FBgn0015621	Clp	99	53.082	Drosophila_melanogaster
ENSEASG00005002487	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSEASG00005002487	CPSF4	99	71.774	ENSEBUG00000012552	cpsf4	98	70.161	Eptatretus_burgeri
ENSEASG00005002487	CPSF4	100	90.706	ENSECAG00000007525	CPSF4	100	90.706	Equus_caballus
ENSEASG00005002487	CPSF4	59	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSEASG00005002487	CPSF4	100	79.412	ENSELUG00000011481	cpsf4	100	79.412	Esox_lucius
ENSEASG00005002487	CPSF4	100	90.706	ENSFCAG00000015070	CPSF4	100	90.706	Felis_catus
ENSEASG00005002487	CPSF4	68	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSEASG00005002487	CPSF4	100	94.672	ENSFALG00000013799	CPSF4	100	94.672	Ficedula_albicollis
ENSEASG00005002487	CPSF4	89	88.889	ENSFDAG00000014092	CPSF4	100	88.889	Fukomys_damarensis
ENSEASG00005002487	CPSF4	100	80.377	ENSFHEG00000010880	cpsf4	100	80.377	Fundulus_heteroclitus
ENSEASG00005002487	CPSF4	100	80.233	ENSGMOG00000002330	cpsf4	100	80.233	Gadus_morhua
ENSEASG00005002487	CPSF4	100	94.672	ENSGALG00000004714	CPSF4	100	94.672	Gallus_gallus
ENSEASG00005002487	CPSF4	65	39.326	ENSGALG00000004441	-	98	37.640	Gallus_gallus
ENSEASG00005002487	CPSF4	100	80.303	ENSGAFG00000010580	cpsf4	100	80.303	Gambusia_affinis
ENSEASG00005002487	CPSF4	100	82.283	ENSGACG00000007792	cpsf4	100	82.283	Gasterosteus_aculeatus
ENSEASG00005002487	CPSF4	100	84.758	ENSGAGG00000021835	CPSF4	100	84.387	Gopherus_agassizii
ENSEASG00005002487	CPSF4	75	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSEASG00005002487	CPSF4	100	89.963	ENSGGOG00000015131	CPSF4	100	89.963	Gorilla_gorilla
ENSEASG00005002487	CPSF4	100	80.000	ENSHBUG00000013699	cpsf4	100	80.000	Haplochromis_burtoni
ENSEASG00005002487	CPSF4	100	89.668	ENSHGLG00000017150	CPSF4	100	89.668	Heterocephalus_glaber_female
ENSEASG00005002487	CPSF4	86	86.441	ENSHGLG00100009215	-	100	86.441	Heterocephalus_glaber_male
ENSEASG00005002487	CPSF4	100	62.705	ENSHGLG00100017302	-	100	62.705	Heterocephalus_glaber_male
ENSEASG00005002487	CPSF4	100	79.623	ENSHCOG00000004397	cpsf4	100	79.623	Hippocampus_comes
ENSEASG00005002487	CPSF4	100	78.229	ENSIPUG00000017147	cpsf4	100	80.074	Ictalurus_punctatus
ENSEASG00005002487	CPSF4	100	99.590	ENSSTOG00000001688	CPSF4	100	99.590	Ictidomys_tridecemlineatus
ENSEASG00005002487	CPSF4	100	90.335	ENSJJAG00000019426	Cpsf4	100	90.335	Jaculus_jaculus
ENSEASG00005002487	CPSF4	100	78.491	ENSKMAG00000015642	cpsf4	100	78.491	Kryptolebias_marmoratus
ENSEASG00005002487	CPSF4	100	65.854	ENSLACG00000018470	-	100	64.082	Latimeria_chalumnae
ENSEASG00005002487	CPSF4	100	82.963	ENSLACG00000010938	CPSF4	100	82.963	Latimeria_chalumnae
ENSEASG00005002487	CPSF4	100	81.784	ENSLOCG00000004814	cpsf4	100	84.387	Lepisosteus_oculatus
ENSEASG00005002487	CPSF4	100	90.335	ENSLAFG00000000159	CPSF4	100	90.335	Loxodonta_africana
ENSEASG00005002487	CPSF4	100	90.984	ENSMFAG00000001462	CPSF4	100	98.953	Macaca_fascicularis
ENSEASG00005002487	CPSF4	100	89.963	ENSMMUG00000019191	CPSF4	100	89.963	Macaca_mulatta
ENSEASG00005002487	CPSF4	100	90.984	ENSMNEG00000032306	CPSF4	100	89.963	Macaca_nemestrina
ENSEASG00005002487	CPSF4	100	90.984	ENSMLEG00000034721	CPSF4	100	89.963	Mandrillus_leucophaeus
ENSEASG00005002487	CPSF4	100	80.827	ENSMAMG00000006244	cpsf4	100	80.827	Mastacembelus_armatus
ENSEASG00005002487	CPSF4	100	80.000	ENSMZEG00005007515	cpsf4	100	80.000	Maylandia_zebra
ENSEASG00005002487	CPSF4	86	94.286	ENSMGAG00000004235	CPSF4	100	94.286	Meleagris_gallopavo
ENSEASG00005002487	CPSF4	100	90.706	ENSMAUG00000021253	Cpsf4	100	90.706	Mesocricetus_auratus
ENSEASG00005002487	CPSF4	100	89.963	ENSMICG00000017429	CPSF4	100	89.963	Microcebus_murinus
ENSEASG00005002487	CPSF4	100	90.706	ENSMOCG00000014901	Cpsf4	100	90.706	Microtus_ochrogaster
ENSEASG00005002487	CPSF4	100	80.075	ENSMMOG00000001813	cpsf4	95	87.879	Mola_mola
ENSEASG00005002487	CPSF4	100	88.104	ENSMODG00000001367	CPSF4	100	88.104	Monodelphis_domestica
ENSEASG00005002487	CPSF4	100	82.022	ENSMALG00000012611	cpsf4	100	81.273	Monopterus_albus
ENSEASG00005002487	CPSF4	100	100.000	MGP_CAROLIEiJ_G0028012	Cpsf4	100	100.000	Mus_caroli
ENSEASG00005002487	CPSF4	100	100.000	ENSMUSG00000029625	Cpsf4	100	100.000	Mus_musculus
ENSEASG00005002487	CPSF4	100	100.000	MGP_PahariEiJ_G0024581	Cpsf4	100	100.000	Mus_pahari
ENSEASG00005002487	CPSF4	100	99.590	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.590	Mus_spretus
ENSEASG00005002487	CPSF4	100	90.706	ENSMPUG00000016508	CPSF4	100	90.706	Mustela_putorius_furo
ENSEASG00005002487	CPSF4	86	98.571	ENSMLUG00000010980	CPSF4	100	98.571	Myotis_lucifugus
ENSEASG00005002487	CPSF4	100	90.335	ENSNGAG00000001567	Cpsf4	100	90.335	Nannospalax_galili
ENSEASG00005002487	CPSF4	90	79.253	ENSNBRG00000003943	cpsf4	98	79.253	Neolamprologus_brichardi
ENSEASG00005002487	CPSF4	100	99.180	ENSNLEG00000011074	CPSF4	100	99.180	Nomascus_leucogenys
ENSEASG00005002487	CPSF4	100	88.104	ENSMEUG00000006955	CPSF4	100	88.104	Notamacropus_eugenii
ENSEASG00005002487	CPSF4	100	89.963	ENSOPRG00000013663	CPSF4	100	89.963	Ochotona_princeps
ENSEASG00005002487	CPSF4	98	84.583	ENSODEG00000018283	-	91	84.583	Octodon_degus
ENSEASG00005002487	CPSF4	100	73.563	ENSODEG00000009779	-	100	73.563	Octodon_degus
ENSEASG00005002487	CPSF4	100	90.706	ENSODEG00000011181	-	100	90.706	Octodon_degus
ENSEASG00005002487	CPSF4	100	80.000	ENSONIG00000008495	cpsf4	100	80.000	Oreochromis_niloticus
ENSEASG00005002487	CPSF4	86	85.897	ENSOANG00000007729	CPSF4	100	85.897	Ornithorhynchus_anatinus
ENSEASG00005002487	CPSF4	100	54.317	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSEASG00005002487	CPSF4	100	89.963	ENSOCUG00000002437	CPSF4	70	89.963	Oryctolagus_cuniculus
ENSEASG00005002487	CPSF4	100	80.377	ENSORLG00000022798	cpsf4	100	80.377	Oryzias_latipes
ENSEASG00005002487	CPSF4	100	80.377	ENSORLG00020008548	cpsf4	100	80.377	Oryzias_latipes_hni
ENSEASG00005002487	CPSF4	100	80.000	ENSORLG00015019575	cpsf4	100	80.000	Oryzias_latipes_hsok
ENSEASG00005002487	CPSF4	100	79.245	ENSOMEG00000005176	cpsf4	100	79.245	Oryzias_melastigma
ENSEASG00005002487	CPSF4	100	90.335	ENSOGAG00000010884	CPSF4	100	90.335	Otolemur_garnettii
ENSEASG00005002487	CPSF4	100	78.388	ENSOARG00000018668	CPSF4	100	77.289	Ovis_aries
ENSEASG00005002487	CPSF4	100	89.591	ENSPPAG00000043355	CPSF4	100	89.591	Pan_paniscus
ENSEASG00005002487	CPSF4	100	90.706	ENSPPRG00000003134	CPSF4	100	90.706	Panthera_pardus
ENSEASG00005002487	CPSF4	89	89.256	ENSPTIG00000005604	CPSF4	90	89.256	Panthera_tigris_altaica
ENSEASG00005002487	CPSF4	100	89.591	ENSPTRG00000019453	CPSF4	100	89.591	Pan_troglodytes
ENSEASG00005002487	CPSF4	100	90.984	ENSPANG00000023123	CPSF4	100	89.963	Papio_anubis
ENSEASG00005002487	CPSF4	100	80.292	ENSPKIG00000014278	cpsf4	100	80.292	Paramormyrops_kingsleyae
ENSEASG00005002487	CPSF4	78	81.481	ENSPSIG00000011229	CPSF4	100	81.019	Pelodiscus_sinensis
ENSEASG00005002487	CPSF4	79	65.306	ENSPSIG00000018198	-	100	65.285	Pelodiscus_sinensis
ENSEASG00005002487	CPSF4	100	80.738	ENSPMGG00000017735	cpsf4	100	78.862	Periophthalmus_magnuspinnatus
ENSEASG00005002487	CPSF4	100	90.706	ENSPEMG00000004508	Cpsf4	100	90.706	Peromyscus_maniculatus_bairdii
ENSEASG00005002487	CPSF4	100	88.104	ENSPCIG00000024776	CPSF4	100	88.104	Phascolarctos_cinereus
ENSEASG00005002487	CPSF4	100	80.303	ENSPFOG00000014912	cpsf4	100	80.303	Poecilia_formosa
ENSEASG00005002487	CPSF4	100	79.675	ENSPLAG00000009599	cpsf4	100	79.268	Poecilia_latipinna
ENSEASG00005002487	CPSF4	100	80.303	ENSPMEG00000009790	cpsf4	100	80.303	Poecilia_mexicana
ENSEASG00005002487	CPSF4	100	79.545	ENSPREG00000018166	cpsf4	100	77.099	Poecilia_reticulata
ENSEASG00005002487	CPSF4	86	87.607	ENSPPYG00000017378	CPSF4	100	87.607	Pongo_abelii
ENSEASG00005002487	CPSF4	100	89.591	ENSPCAG00000001892	CPSF4	100	89.591	Procavia_capensis
ENSEASG00005002487	CPSF4	100	90.335	ENSPCOG00000012771	CPSF4	100	90.335	Propithecus_coquereli
ENSEASG00005002487	CPSF4	100	84.015	ENSPVAG00000007531	CPSF4	100	84.015	Pteropus_vampyrus
ENSEASG00005002487	CPSF4	100	80.000	ENSPNYG00000018559	cpsf4	100	80.000	Pundamilia_nyererei
ENSEASG00005002487	CPSF4	100	81.852	ENSPNAG00000003736	cpsf4	100	81.852	Pygocentrus_nattereri
ENSEASG00005002487	CPSF4	100	99.590	ENSRNOG00000000985	Cpsf4	100	99.590	Rattus_norvegicus
ENSEASG00005002487	CPSF4	86	88.462	ENSRBIG00000033886	CPSF4	100	88.462	Rhinopithecus_bieti
ENSEASG00005002487	CPSF4	100	99.180	ENSRROG00000040431	CPSF4	100	99.180	Rhinopithecus_roxellana
ENSEASG00005002487	CPSF4	100	89.963	ENSSBOG00000020493	CPSF4	100	98.953	Saimiri_boliviensis_boliviensis
ENSEASG00005002487	CPSF4	100	88.104	ENSSHAG00000011533	CPSF4	100	88.104	Sarcophilus_harrisii
ENSEASG00005002487	CPSF4	100	81.522	ENSSFOG00015007883	cpsf4	100	81.522	Scleropages_formosus
ENSEASG00005002487	CPSF4	100	86.122	ENSSMAG00000006374	cpsf4	100	86.122	Scophthalmus_maximus
ENSEASG00005002487	CPSF4	100	80.899	ENSSDUG00000018887	cpsf4	100	80.899	Seriola_dumerili
ENSEASG00005002487	CPSF4	100	80.899	ENSSLDG00000019078	cpsf4	100	81.648	Seriola_lalandi_dorsalis
ENSEASG00005002487	CPSF4	86	88.889	ENSSARG00000012416	CPSF4	100	88.889	Sorex_araneus
ENSEASG00005002487	CPSF4	95	64.807	ENSSPUG00000014803	-	97	64.135	Sphenodon_punctatus
ENSEASG00005002487	CPSF4	100	85.502	ENSSPUG00000003549	CPSF4	100	84.015	Sphenodon_punctatus
ENSEASG00005002487	CPSF4	100	87.705	ENSSPAG00000006174	cpsf4	100	87.705	Stegastes_partitus
ENSEASG00005002487	CPSF4	100	99.590	ENSSSCG00000026896	CPSF4	100	99.590	Sus_scrofa
ENSEASG00005002487	CPSF4	100	93.496	ENSTGUG00000007552	CPSF4	100	93.496	Taeniopygia_guttata
ENSEASG00005002487	CPSF4	100	79.087	ENSTRUG00000024220	cpsf4	100	79.087	Takifugu_rubripes
ENSEASG00005002487	CPSF4	100	78.707	ENSTNIG00000006265	cpsf4	100	79.468	Tetraodon_nigroviridis
ENSEASG00005002487	CPSF4	86	76.923	ENSTBEG00000011406	CPSF4	100	77.350	Tupaia_belangeri
ENSEASG00005002487	CPSF4	100	78.439	ENSTTRG00000003007	CPSF4	100	78.439	Tursiops_truncatus
ENSEASG00005002487	CPSF4	91	99.550	ENSUAMG00000008051	CPSF4	85	99.550	Ursus_americanus
ENSEASG00005002487	CPSF4	100	99.590	ENSUMAG00000009474	CPSF4	100	99.590	Ursus_maritimus
ENSEASG00005002487	CPSF4	100	99.590	ENSVVUG00000008824	CPSF4	100	99.590	Vulpes_vulpes
ENSEASG00005002487	CPSF4	99	61.278	ENSXETG00000004641	cpsf4l	99	60.526	Xenopus_tropicalis
ENSEASG00005002487	CPSF4	100	79.928	ENSXETG00000009892	cpsf4	100	81.362	Xenopus_tropicalis
ENSEASG00005002487	CPSF4	100	79.924	ENSXCOG00000016040	cpsf4	100	79.924	Xiphophorus_couchianus
ENSEASG00005002487	CPSF4	100	80.303	ENSXMAG00000024670	cpsf4	100	80.303	Xiphophorus_maculatus