EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEASG00005002687 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Plus strand
Length: 114296 bases
Position: chrPSZQ01000897.1:9777055-9891350
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005004756	XRN_N	PF03159.18	2.1e-96	1	1
ENSEASP00005004749	XRN_N	PF03159.18	3.9e-96	1	1
ENSEASP00005004684	XRN_N	PF03159.18	4.1e-96	1	1
ENSEASP00005004741	XRN_N	PF03159.18	4.3e-96	1	1
ENSEASP00005004724	XRN_N	PF03159.18	4.8e-96	1	1
ENSEASP00005004686	XRN_N	PF03159.18	1e-95	1	1
ENSEASP00005004763	XRN_N	PF03159.18	3.5e-79	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005005218	XRN1-207	4608	-	ENSEASP00005004763	1535 (aa)	-	-
ENSEAST00005005210	XRN1-206	2910	-	ENSEASP00005004756	969 (aa)	-	-
ENSEAST00005005136	XRN1-201	5190	-	ENSEASP00005004684	1729 (aa)	-	-
ENSEAST00005005203	XRN1-205	3984	-	ENSEASP00005004749	1327 (aa)	-	-
ENSEAST00005005194	XRN1-204	4305	-	ENSEASP00005004741	1434 (aa)	-	-
ENSEAST00005005138	XRN1-202	5118	-	ENSEASP00005004686	1705 (aa)	-	UPI00071A79E0
ENSEAST00005005177	XRN1-203	4605	-	ENSEASP00005004724	1534 (aa)	-	-

Gene Model

Click here to download ENSEASG00005002687's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005002687's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEASG00005002687	XRN1	61	39.648	ENSEASG00005002484	XRN2	71	39.239

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005002687	XRN1	99	95.721	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSEASG00005002687	XRN1	99	78.413	ENSAPOG00000000622	xrn1	93	76.874	Acanthochromis_polyacanthus
ENSEASG00005002687	XRN1	99	97.329	ENSAMEG00000012538	XRN1	100	94.121	Ailuropoda_melanoleuca
ENSEASG00005002687	XRN1	99	78.639	ENSACIG00000001057	xrn1	93	73.068	Amphilophus_citrinellus
ENSEASG00005002687	XRN1	99	78.378	ENSAOCG00000014097	xrn1	95	72.152	Amphiprion_ocellaris
ENSEASG00005002687	XRN1	99	78.537	ENSAPEG00000006620	xrn1	91	72.935	Amphiprion_percula
ENSEASG00005002687	XRN1	99	76.115	ENSATEG00000009752	xrn1	98	71.009	Anabas_testudineus
ENSEASG00005002687	XRN1	96	88.576	ENSAPLG00000004905	XRN1	100	76.590	Anas_platyrhynchos
ENSEASG00005002687	XRN1	99	85.714	ENSACAG00000004985	XRN1	100	72.563	Anolis_carolinensis
ENSEASG00005002687	XRN1	99	96.502	ENSANAG00000029013	XRN1	99	95.057	Aotus_nancymaae
ENSEASG00005002687	XRN1	99	77.532	ENSACLG00000004806	xrn1	89	72.920	Astatotilapia_calliptera
ENSEASG00005002687	XRN1	99	74.127	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSEASG00005002687	XRN1	99	96.707	ENSBTAG00000011524	XRN1	100	92.912	Bos_taurus
ENSEASG00005002687	XRN1	93	52.782	WBGene00012730	xrn-1	73	63.904	Caenorhabditis_elegans
ENSEASG00005002687	XRN1	99	96.038	ENSCJAG00000001872	XRN1	100	92.150	Callithrix_jacchus
ENSEASG00005002687	XRN1	99	98.204	ENSCAFG00000007783	XRN1	100	94.570	Canis_familiaris
ENSEASG00005002687	XRN1	99	98.204	ENSCAFG00020009120	XRN1	99	98.204	Canis_lupus_dingo
ENSEASG00005002687	XRN1	99	96.707	ENSCHIG00000019192	XRN1	99	92.192	Capra_hircus
ENSEASG00005002687	XRN1	100	95.429	ENSTSYG00000002705	XRN1	100	92.037	Carlito_syrichta
ENSEASG00005002687	XRN1	97	73.122	ENSCAPG00000004604	-	94	97.653	Cavia_aperea
ENSEASG00005002687	XRN1	100	96.698	ENSCCAG00000034800	XRN1	100	96.698	Cebus_capucinus
ENSEASG00005002687	XRN1	99	96.513	ENSCATG00000041794	XRN1	100	93.146	Cercocebus_atys
ENSEASG00005002687	XRN1	100	95.459	ENSCLAG00000001451	XRN1	100	95.459	Chinchilla_lanigera
ENSEASG00005002687	XRN1	99	96.513	ENSCSAG00000011265	XRN1	100	93.146	Chlorocebus_sabaeus
ENSEASG00005002687	XRN1	62	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSEASG00005002687	XRN1	84	61.054	ENSCSAVG00000008584	-	98	45.051	Ciona_savignyi
ENSEASG00005002687	XRN1	100	97.007	ENSCANG00000037495	XRN1	100	97.007	Colobus_angolensis_palliatus
ENSEASG00005002687	XRN1	100	95.150	ENSCGRG00001019411	Xrn1	100	95.150	Cricetulus_griseus_chok1gshd
ENSEASG00005002687	XRN1	100	95.150	ENSCGRG00000012464	Xrn1	100	95.150	Cricetulus_griseus_crigri
ENSEASG00005002687	XRN1	99	78.095	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSEASG00005002687	XRN1	99	76.630	ENSCVAG00000013089	xrn1	99	75.206	Cyprinodon_variegatus
ENSEASG00005002687	XRN1	99	80.032	ENSDARG00000091652	xrn1	98	80.421	Danio_rerio
ENSEASG00005002687	XRN1	99	95.231	ENSDORG00000013833	Xrn1	100	87.177	Dipodomys_ordii
ENSEASG00005002687	XRN1	96	53.997	FBgn0020261	pcm	76	39.923	Drosophila_melanogaster
ENSEASG00005002687	XRN1	86	98.198	ENSETEG00000003978	XRN1	88	97.581	Echinops_telfairi
ENSEASG00005002687	XRN1	100	99.765	ENSECAG00000008301	XRN1	100	99.765	Equus_caballus
ENSEASG00005002687	XRN1	84	96.322	ENSEEUG00000011323	XRN1	92	82.307	Erinaceus_europaeus
ENSEASG00005002687	XRN1	99	79.114	ENSELUG00000000169	xrn1	98	71.210	Esox_lucius
ENSEASG00005002687	XRN1	99	95.509	ENSFCAG00000027589	XRN1	99	96.484	Felis_catus
ENSEASG00005002687	XRN1	99	87.917	ENSFALG00000007021	XRN1	100	75.322	Ficedula_albicollis
ENSEASG00005002687	XRN1	100	95.150	ENSFDAG00000020494	XRN1	100	95.150	Fukomys_damarensis
ENSEASG00005002687	XRN1	50	70.894	ENSFHEG00000017356	-	98	74.723	Fundulus_heteroclitus
ENSEASG00005002687	XRN1	99	76.508	ENSGMOG00000006396	xrn1	80	67.950	Gadus_morhua
ENSEASG00005002687	XRN1	99	88.235	ENSGALG00000002706	XRN1	100	75.660	Gallus_gallus
ENSEASG00005002687	XRN1	99	76.498	ENSGACG00000014328	xrn1	96	62.153	Gasterosteus_aculeatus
ENSEASG00005002687	XRN1	99	87.302	ENSGAGG00000017535	XRN1	99	78.481	Gopherus_agassizii
ENSEASG00005002687	XRN1	100	95.265	ENSGGOG00000008047	XRN1	100	92.912	Gorilla_gorilla
ENSEASG00005002687	XRN1	99	75.158	ENSHBUG00000005908	xrn1	98	73.913	Haplochromis_burtoni
ENSEASG00005002687	XRN1	100	95.020	ENSHGLG00000014476	XRN1	100	95.764	Heterocephalus_glaber_female
ENSEASG00005002687	XRN1	100	95.020	ENSHGLG00100015130	XRN1	100	95.764	Heterocephalus_glaber_male
ENSEASG00005002687	XRN1	99	76.000	ENSHCOG00000014062	xrn1	97	71.176	Hippocampus_comes
ENSEASG00005002687	XRN1	99	79.206	ENSIPUG00000015229	xrn1	97	71.506	Ictalurus_punctatus
ENSEASG00005002687	XRN1	99	97.147	ENSSTOG00000013552	XRN1	99	97.147	Ictidomys_tridecemlineatus
ENSEASG00005002687	XRN1	97	94.915	ENSJJAG00000010863	Xrn1	100	94.915	Jaculus_jaculus
ENSEASG00005002687	XRN1	99	78.115	ENSKMAG00000021356	xrn1	94	77.350	Kryptolebias_marmoratus
ENSEASG00005002687	XRN1	99	77.901	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSEASG00005002687	XRN1	99	84.603	ENSLACG00000009020	XRN1	97	71.082	Latimeria_chalumnae
ENSEASG00005002687	XRN1	99	82.780	ENSLOCG00000007944	xrn1	89	76.705	Lepisosteus_oculatus
ENSEASG00005002687	XRN1	99	96.343	ENSLAFG00000015426	XRN1	100	95.510	Loxodonta_africana
ENSEASG00005002687	XRN1	99	96.672	ENSMFAG00000032599	XRN1	100	93.263	Macaca_fascicularis
ENSEASG00005002687	XRN1	99	96.513	ENSMMUG00000014038	XRN1	100	93.204	Macaca_mulatta
ENSEASG00005002687	XRN1	99	96.197	ENSMNEG00000034217	XRN1	100	93.029	Macaca_nemestrina
ENSEASG00005002687	XRN1	99	78.956	ENSMAMG00000013219	xrn1	94	77.500	Mastacembelus_armatus
ENSEASG00005002687	XRN1	99	77.373	ENSMZEG00005015099	xrn1	89	72.838	Maylandia_zebra
ENSEASG00005002687	XRN1	97	83.993	ENSMGAG00000006333	XRN1	100	75.377	Meleagris_gallopavo
ENSEASG00005002687	XRN1	100	95.510	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSEASG00005002687	XRN1	100	94.324	ENSMOCG00000008665	Xrn1	100	94.324	Microtus_ochrogaster
ENSEASG00005002687	XRN1	54	68.266	ENSMMOG00000020896	-	96	68.738	Mola_mola
ENSEASG00005002687	XRN1	99	89.650	ENSMODG00000021236	XRN1	100	81.914	Monodelphis_domestica
ENSEASG00005002687	XRN1	99	71.111	ENSMALG00000004098	xrn1	93	69.124	Monopterus_albus
ENSEASG00005002687	XRN1	99	94.731	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSEASG00005002687	XRN1	99	94.929	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSEASG00005002687	XRN1	99	95.087	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSEASG00005002687	XRN1	99	94.929	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSEASG00005002687	XRN1	99	97.904	ENSMPUG00000012040	XRN1	100	94.200	Mustela_putorius_furo
ENSEASG00005002687	XRN1	98	96.184	ENSMLUG00000016885	XRN1	100	90.878	Myotis_lucifugus
ENSEASG00005002687	XRN1	99	92.427	ENSNGAG00000023964	Xrn1	99	94.012	Nannospalax_galili
ENSEASG00005002687	XRN1	100	95.673	ENSNLEG00000004726	XRN1	100	93.146	Nomascus_leucogenys
ENSEASG00005002687	XRN1	80	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSEASG00005002687	XRN1	75	94.891	ENSOPRG00000007337	-	70	94.891	Ochotona_princeps
ENSEASG00005002687	XRN1	99	78.288	ENSONIG00000016673	xrn1	99	64.919	Oreochromis_niloticus
ENSEASG00005002687	XRN1	93	84.389	ENSOANG00000006735	XRN1	92	85.740	Ornithorhynchus_anatinus
ENSEASG00005002687	XRN1	99	96.038	ENSOCUG00000001861	XRN1	100	89.971	Oryctolagus_cuniculus
ENSEASG00005002687	XRN1	99	78.864	ENSORLG00000013005	xrn1	78	83.784	Oryzias_latipes
ENSEASG00005002687	XRN1	99	79.365	ENSORLG00020005559	xrn1	93	72.400	Oryzias_latipes_hni
ENSEASG00005002687	XRN1	98	81.081	ENSORLG00015022523	xrn1	85	83.333	Oryzias_latipes_hsok
ENSEASG00005002687	XRN1	99	78.219	ENSOMEG00000015397	xrn1	100	72.942	Oryzias_melastigma
ENSEASG00005002687	XRN1	99	92.571	ENSOGAG00000000170	XRN1	100	89.520	Otolemur_garnettii
ENSEASG00005002687	XRN1	99	96.707	ENSOARG00000006343	XRN1	99	93.079	Ovis_aries
ENSEASG00005002687	XRN1	99	95.404	ENSPPAG00000010180	XRN1	100	92.970	Pan_paniscus
ENSEASG00005002687	XRN1	99	97.305	ENSPPRG00000007125	XRN1	100	93.443	Panthera_pardus
ENSEASG00005002687	XRN1	99	97.305	ENSPTIG00000021081	XRN1	100	93.384	Panthera_tigris_altaica
ENSEASG00005002687	XRN1	99	95.404	ENSPTRG00000015482	XRN1	100	93.029	Pan_troglodytes
ENSEASG00005002687	XRN1	99	96.513	ENSPANG00000010638	XRN1	100	93.087	Papio_anubis
ENSEASG00005002687	XRN1	99	87.639	ENSPSIG00000018050	XRN1	100	77.099	Pelodiscus_sinensis
ENSEASG00005002687	XRN1	99	74.483	ENSPMGG00000002648	xrn1	98	79.180	Periophthalmus_magnuspinnatus
ENSEASG00005002687	XRN1	100	94.943	ENSPEMG00000020610	Xrn1	100	94.943	Peromyscus_maniculatus_bairdii
ENSEASG00005002687	XRN1	79	78.448	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSEASG00005002687	XRN1	99	89.825	ENSPCIG00000028735	XRN1	100	89.463	Phascolarctos_cinereus
ENSEASG00005002687	XRN1	99	78.459	ENSPFOG00000013932	xrn1	99	64.706	Poecilia_formosa
ENSEASG00005002687	XRN1	99	78.764	ENSPLAG00000021653	xrn1	99	64.440	Poecilia_latipinna
ENSEASG00005002687	XRN1	99	78.199	ENSPMEG00000003076	xrn1	79	83.333	Poecilia_mexicana
ENSEASG00005002687	XRN1	99	78.268	ENSPREG00000021147	xrn1	93	71.358	Poecilia_reticulata
ENSEASG00005002687	XRN1	99	96.038	ENSPPYG00000014172	XRN1	100	92.912	Pongo_abelii
ENSEASG00005002687	XRN1	90	97.368	ENSPCAG00000005638	XRN1	100	81.282	Procavia_capensis
ENSEASG00005002687	XRN1	100	96.801	ENSPCOG00000013089	XRN1	99	97.305	Propithecus_coquereli
ENSEASG00005002687	XRN1	99	96.386	ENSPVAG00000016265	XRN1	96	92.288	Pteropus_vampyrus
ENSEASG00005002687	XRN1	99	77.690	ENSPNYG00000010570	xrn1	93	71.180	Pundamilia_nyererei
ENSEASG00005002687	XRN1	99	76.935	ENSPNAG00000023531	xrn1	93	68.058	Pygocentrus_nattereri
ENSEASG00005002687	XRN1	99	94.929	ENSRNOG00000042951	Xrn1	100	88.330	Rattus_norvegicus
ENSEASG00005002687	XRN1	99	96.038	ENSRBIG00000041227	XRN1	100	92.443	Rhinopithecus_bieti
ENSEASG00005002687	XRN1	89	54.768	YGL173C	XRN1	73	54.768	Saccharomyces_cerevisiae
ENSEASG00005002687	XRN1	99	96.830	ENSSBOG00000029561	XRN1	100	92.326	Saimiri_boliviensis_boliviensis
ENSEASG00005002687	XRN1	98	87.833	ENSSHAG00000016207	XRN1	100	81.420	Sarcophilus_harrisii
ENSEASG00005002687	XRN1	99	78.696	ENSSFOG00015024211	xrn1	97	63.051	Scleropages_formosus
ENSEASG00005002687	XRN1	99	79.556	ENSSMAG00000016534	xrn1	94	72.397	Scophthalmus_maximus
ENSEASG00005002687	XRN1	99	79.365	ENSSDUG00000010306	xrn1	91	72.742	Seriola_dumerili
ENSEASG00005002687	XRN1	99	79.365	ENSSLDG00000021543	xrn1	97	72.213	Seriola_lalandi_dorsalis
ENSEASG00005002687	XRN1	89	92.384	ENSSARG00000007741	-	83	85.227	Sorex_araneus
ENSEASG00005002687	XRN1	50	76.923	ENSSPAG00000009856	-	96	77.033	Stegastes_partitus
ENSEASG00005002687	XRN1	99	88.235	ENSTGUG00000008498	XRN1	93	84.959	Taeniopygia_guttata
ENSEASG00005002687	XRN1	99	77.955	ENSTRUG00000004895	xrn1	96	78.834	Takifugu_rubripes
ENSEASG00005002687	XRN1	97	76.771	ENSTNIG00000017615	xrn1	89	69.498	Tetraodon_nigroviridis
ENSEASG00005002687	XRN1	90	97.382	ENSTBEG00000003256	XRN1	89	86.762	Tupaia_belangeri
ENSEASG00005002687	XRN1	99	96.988	ENSTTRG00000012914	XRN1	100	89.162	Tursiops_truncatus
ENSEASG00005002687	XRN1	99	98.204	ENSUAMG00000001608	XRN1	99	98.204	Ursus_americanus
ENSEASG00005002687	XRN1	99	98.204	ENSUMAG00000013625	XRN1	100	95.199	Ursus_maritimus
ENSEASG00005002687	XRN1	99	96.197	ENSVPAG00000004690	XRN1	100	90.510	Vicugna_pacos
ENSEASG00005002687	XRN1	99	98.204	ENSVVUG00000024461	XRN1	99	98.204	Vulpes_vulpes
ENSEASG00005002687	XRN1	99	83.254	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSEASG00005002687	XRN1	99	77.424	ENSXCOG00000007917	xrn1	95	62.349	Xiphophorus_couchianus
ENSEASG00005002687	XRN1	99	76.948	ENSXMAG00000018320	xrn1	92	71.964	Xiphophorus_maculatus