EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEASG00005004799 (Gene tree)
Gene ID: -
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Plus strand
Length: 69768 bases
Position: chrPSZQ01001389.1:16868504-16938271
Accession: 29318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005006485	Ago_hook	PF10427.9	6e-23	1	1
ENSEASP00005006482	Ago_hook	PF10427.9	6.5e-23	1	1
ENSEASP00005006485	RRM_1	PF00076.22	0.00025	1	1
ENSEASP00005006482	RRM_1	PF00076.22	0.00026	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005007098	TNRC6C-202	5477	-	ENSEASP00005006485	1643 (aa)	-	UPI00071A1741
ENSEAST00005007093	TNRC6C-201	5597	-	ENSEASP00005006482	1683 (aa)	-	UPI0004BDCE08

Gene Model

Click here to download ENSEASG00005004799's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005004799's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEASG00005004799	TNRC6C	99	43.764	ENSEASG00005017693	TNRC6A	90	43.280
ENSEASG00005004799	TNRC6C	93	35.134	ENSEASG00005005306	TNRC6B	72	37.517

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005004799	TNRC6C	100	91.248	ENSG00000078687	TNRC6C	100	94.737	Homo_sapiens
ENSEASG00005004799	TNRC6C	80	55.508	ENSAPOG00000019749	tnrc6c1	92	50.544	Acanthochromis_polyacanthus
ENSEASG00005004799	TNRC6C	100	88.563	ENSAMEG00000013756	TNRC6C	96	88.367	Ailuropoda_melanoleuca
ENSEASG00005004799	TNRC6C	94	48.026	ENSACIG00000008075	tnrc6c1	90	51.862	Amphilophus_citrinellus
ENSEASG00005004799	TNRC6C	78	67.357	ENSAOCG00000023968	tnrc6c1	92	50.828	Amphiprion_ocellaris
ENSEASG00005004799	TNRC6C	80	54.713	ENSAPEG00000009020	tnrc6c1	92	50.915	Amphiprion_percula
ENSEASG00005004799	TNRC6C	100	84.567	ENSAPLG00000005456	TNRC6C	90	84.223	Anas_platyrhynchos
ENSEASG00005004799	TNRC6C	100	85.284	ENSACAG00000016198	TNRC6C	88	85.284	Anolis_carolinensis
ENSEASG00005004799	TNRC6C	100	90.592	ENSANAG00000021554	TNRC6C	100	90.828	Aotus_nancymaae
ENSEASG00005004799	TNRC6C	100	47.553	ENSACLG00000000424	tnrc6c1	90	51.294	Astatotilapia_calliptera
ENSEASG00005004799	TNRC6C	100	90.101	ENSBTAG00000018658	TNRC6C	100	90.101	Bos_taurus
ENSEASG00005004799	TNRC6C	100	90.888	ENSCJAG00000019431	TNRC6C	100	90.828	Callithrix_jacchus
ENSEASG00005004799	TNRC6C	100	90.835	ENSCAFG00000005224	TNRC6C	89	90.893	Canis_familiaris
ENSEASG00005004799	TNRC6C	100	92.617	ENSCAFG00020006661	TNRC6C	100	91.869	Canis_lupus_dingo
ENSEASG00005004799	TNRC6C	100	89.430	ENSCHIG00000026004	TNRC6C	100	89.953	Capra_hircus
ENSEASG00005004799	TNRC6C	100	89.913	ENSTSYG00000005403	TNRC6C	100	89.913	Carlito_syrichta
ENSEASG00005004799	TNRC6C	100	83.500	ENSCAPG00000007307	TNRC6C	89	84.002	Cavia_aperea
ENSEASG00005004799	TNRC6C	100	88.849	ENSCPOG00000000467	TNRC6C	97	89.502	Cavia_porcellus
ENSEASG00005004799	TNRC6C	100	91.420	ENSCCAG00000030524	TNRC6C	100	91.361	Cebus_capucinus
ENSEASG00005004799	TNRC6C	100	91.124	ENSCATG00000033135	TNRC6C	100	91.065	Cercocebus_atys
ENSEASG00005004799	TNRC6C	100	91.340	ENSCLAG00000011139	TNRC6C	89	91.459	Chinchilla_lanigera
ENSEASG00005004799	TNRC6C	100	89.108	ENSCSAG00000005167	TNRC6C	89	89.108	Chlorocebus_sabaeus
ENSEASG00005004799	TNRC6C	75	90.590	ENSCHOG00000000088	TNRC6C	72	90.499	Choloepus_hoffmanni
ENSEASG00005004799	TNRC6C	100	87.263	ENSCPBG00000027960	TNRC6C	100	87.559	Chrysemys_picta_bellii
ENSEASG00005004799	TNRC6C	100	90.947	ENSCANG00000041771	TNRC6C	100	90.888	Colobus_angolensis_palliatus
ENSEASG00005004799	TNRC6C	100	88.496	ENSCGRG00001022686	Tnrc6c	100	87.375	Cricetulus_griseus_chok1gshd
ENSEASG00005004799	TNRC6C	100	88.915	ENSCGRG00000018041	Tnrc6c	100	87.375	Cricetulus_griseus_crigri
ENSEASG00005004799	TNRC6C	100	48.610	ENSCSEG00000012744	tnrc6c1	88	49.485	Cynoglossus_semilaevis
ENSEASG00005004799	TNRC6C	94	55.306	ENSDARG00000076847	tnrc6c1	96	54.404	Danio_rerio
ENSEASG00005004799	TNRC6C	100	88.477	ENSDNOG00000003247	TNRC6C	91	88.535	Dasypus_novemcinctus
ENSEASG00005004799	TNRC6C	100	85.841	ENSDORG00000004558	Tnrc6c	100	85.310	Dipodomys_ordii
ENSEASG00005004799	TNRC6C	90	82.404	ENSETEG00000005527	TNRC6C	87	82.404	Echinops_telfairi
ENSEASG00005004799	TNRC6C	100	100.000	ENSECAG00000012486	TNRC6C	90	100.000	Equus_caballus
ENSEASG00005004799	TNRC6C	96	92.778	ENSEEUG00000010008	TNRC6C	97	86.197	Erinaceus_europaeus
ENSEASG00005004799	TNRC6C	100	90.710	ENSFCAG00000028358	TNRC6C	100	90.710	Felis_catus
ENSEASG00005004799	TNRC6C	100	83.930	ENSFALG00000000848	TNRC6C	100	83.986	Ficedula_albicollis
ENSEASG00005004799	TNRC6C	100	91.163	ENSFDAG00000010368	TNRC6C	97	91.044	Fukomys_damarensis
ENSEASG00005004799	TNRC6C	94	48.699	ENSFHEG00000002936	tnrc6c1	80	50.914	Fundulus_heteroclitus
ENSEASG00005004799	TNRC6C	100	87.774	ENSGALG00000001725	TNRC6C	100	87.715	Gallus_gallus
ENSEASG00005004799	TNRC6C	100	49.137	ENSGAFG00000019019	tnrc6c1	97	47.504	Gambusia_affinis
ENSEASG00005004799	TNRC6C	80	53.485	ENSGACG00000012320	tnrc6c1	86	49.507	Gasterosteus_aculeatus
ENSEASG00005004799	TNRC6C	100	86.679	ENSGAGG00000022043	TNRC6C	95	87.034	Gopherus_agassizii
ENSEASG00005004799	TNRC6C	100	90.597	ENSGGOG00000011304	TNRC6C	100	90.479	Gorilla_gorilla
ENSEASG00005004799	TNRC6C	100	47.678	ENSHBUG00000010846	tnrc6c1	90	51.511	Haplochromis_burtoni
ENSEASG00005004799	TNRC6C	100	91.222	ENSHGLG00000004809	TNRC6C	89	91.163	Heterocephalus_glaber_female
ENSEASG00005004799	TNRC6C	100	90.201	ENSHGLG00100012597	TNRC6C	89	90.496	Heterocephalus_glaber_male
ENSEASG00005004799	TNRC6C	94	54.583	ENSIPUG00000000818	tnrc6c1	87	54.286	Ictalurus_punctatus
ENSEASG00005004799	TNRC6C	100	89.284	ENSSTOG00000009101	TNRC6C	97	89.047	Ictidomys_tridecemlineatus
ENSEASG00005004799	TNRC6C	100	87.847	ENSJJAG00000017055	Tnrc6c	89	87.729	Jaculus_jaculus
ENSEASG00005004799	TNRC6C	94	50.400	ENSKMAG00000021023	tnrc6c1	97	50.267	Kryptolebias_marmoratus
ENSEASG00005004799	TNRC6C	100	74.750	ENSLACG00000015283	TNRC6C	97	75.044	Latimeria_chalumnae
ENSEASG00005004799	TNRC6C	99	56.736	ENSLOCG00000013377	tnrc6c1	87	57.640	Lepisosteus_oculatus
ENSEASG00005004799	TNRC6C	100	90.248	ENSLAFG00000011122	TNRC6C	90	90.071	Loxodonta_africana
ENSEASG00005004799	TNRC6C	100	91.243	ENSMFAG00000043943	TNRC6C	100	91.183	Macaca_fascicularis
ENSEASG00005004799	TNRC6C	100	91.243	ENSMMUG00000011924	TNRC6C	100	91.183	Macaca_mulatta
ENSEASG00005004799	TNRC6C	100	91.243	ENSMNEG00000030405	TNRC6C	100	91.183	Macaca_nemestrina
ENSEASG00005004799	TNRC6C	100	91.183	ENSMLEG00000033436	TNRC6C	100	91.124	Mandrillus_leucophaeus
ENSEASG00005004799	TNRC6C	94	53.056	ENSMAMG00000023613	tnrc6c1	97	50.230	Mastacembelus_armatus
ENSEASG00005004799	TNRC6C	100	47.553	ENSMZEG00005010920	tnrc6c1	90	51.294	Maylandia_zebra
ENSEASG00005004799	TNRC6C	100	78.156	ENSMGAG00000003906	TNRC6C	90	77.752	Meleagris_gallopavo
ENSEASG00005004799	TNRC6C	100	88.378	ENSMAUG00000021618	Tnrc6c	100	88.437	Mesocricetus_auratus
ENSEASG00005004799	TNRC6C	100	91.657	ENSMICG00000003952	TNRC6C	100	91.538	Microcebus_murinus
ENSEASG00005004799	TNRC6C	100	90.753	ENSMOCG00000015879	Tnrc6c	97	90.634	Microtus_ochrogaster
ENSEASG00005004799	TNRC6C	93	55.780	ENSMMOG00000005203	tnrc6c1	97	50.698	Mola_mola
ENSEASG00005004799	TNRC6C	100	86.262	ENSMODG00000001785	TNRC6C	89	85.554	Monodelphis_domestica
ENSEASG00005004799	TNRC6C	100	90.219	MGP_CAROLIEiJ_G0017465	Tnrc6c	97	90.101	Mus_caroli
ENSEASG00005004799	TNRC6C	100	89.804	ENSMUSG00000025571	Tnrc6c	97	89.686	Mus_musculus
ENSEASG00005004799	TNRC6C	100	90.219	MGP_PahariEiJ_G0018593	Tnrc6c	97	90.101	Mus_pahari
ENSEASG00005004799	TNRC6C	100	89.864	MGP_SPRETEiJ_G0018309	Tnrc6c	97	89.745	Mus_spretus
ENSEASG00005004799	TNRC6C	100	87.935	ENSMPUG00000013348	TNRC6C	88	87.935	Mustela_putorius_furo
ENSEASG00005004799	TNRC6C	100	83.917	ENSMLUG00000014431	TNRC6C	88	83.832	Myotis_lucifugus
ENSEASG00005004799	TNRC6C	100	89.256	ENSNGAG00000012203	Tnrc6c	89	89.315	Nannospalax_galili
ENSEASG00005004799	TNRC6C	100	48.318	ENSNBRG00000005344	tnrc6c1	90	52.132	Neolamprologus_brichardi
ENSEASG00005004799	TNRC6C	100	86.621	ENSNLEG00000000047	TNRC6C	89	86.448	Nomascus_leucogenys
ENSEASG00005004799	TNRC6C	97	80.049	ENSMEUG00000005104	TNRC6C	97	79.988	Notamacropus_eugenii
ENSEASG00005004799	TNRC6C	100	91.281	ENSODEG00000012499	TNRC6C	100	91.281	Octodon_degus
ENSEASG00005004799	TNRC6C	100	50.370	ENSONIG00000002210	tnrc6c1	96	50.409	Oreochromis_niloticus
ENSEASG00005004799	TNRC6C	99	63.716	ENSOANG00000009758	-	84	65.625	Ornithorhynchus_anatinus
ENSEASG00005004799	TNRC6C	84	79.570	ENSOCUG00000006122	TNRC6C	83	71.249	Oryctolagus_cuniculus
ENSEASG00005004799	TNRC6C	91	50.462	ENSORLG00000009837	tnrc6c1	100	68.401	Oryzias_latipes
ENSEASG00005004799	TNRC6C	91	50.462	ENSORLG00020016510	tnrc6c1	100	48.278	Oryzias_latipes_hni
ENSEASG00005004799	TNRC6C	72	44.819	ENSORLG00015000171	tnrc6c1	98	43.154	Oryzias_latipes_hsok
ENSEASG00005004799	TNRC6C	91	50.613	ENSOMEG00000000357	tnrc6c1	94	48.837	Oryzias_melastigma
ENSEASG00005004799	TNRC6C	100	88.000	ENSOGAG00000007197	TNRC6C	100	87.536	Otolemur_garnettii
ENSEASG00005004799	TNRC6C	96	83.990	ENSOARG00000006041	TNRC6C	87	84.152	Ovis_aries
ENSEASG00005004799	TNRC6C	100	91.361	ENSPPAG00000027160	TNRC6C	100	91.302	Pan_paniscus
ENSEASG00005004799	TNRC6C	100	90.888	ENSPPRG00000018881	TNRC6C	100	90.888	Panthera_pardus
ENSEASG00005004799	TNRC6C	90	84.279	ENSPTIG00000008791	TNRC6C	83	84.322	Panthera_tigris_altaica
ENSEASG00005004799	TNRC6C	100	91.361	ENSPTRG00000009699	TNRC6C	100	91.302	Pan_troglodytes
ENSEASG00005004799	TNRC6C	100	91.405	ENSPANG00000019994	TNRC6C	100	91.346	Papio_anubis
ENSEASG00005004799	TNRC6C	96	52.389	ENSPKIG00000005428	tnrc6c1	100	49.945	Paramormyrops_kingsleyae
ENSEASG00005004799	TNRC6C	100	85.198	ENSPSIG00000018069	TNRC6C	97	85.198	Pelodiscus_sinensis
ENSEASG00005004799	TNRC6C	87	54.721	ENSPMGG00000022911	tnrc6c1	97	63.265	Periophthalmus_magnuspinnatus
ENSEASG00005004799	TNRC6C	100	89.853	ENSPEMG00000009785	Tnrc6c	100	86.844	Peromyscus_maniculatus_bairdii
ENSEASG00005004799	TNRC6C	59	84.671	ENSPCIG00000017421	-	99	84.671	Phascolarctos_cinereus
ENSEASG00005004799	TNRC6C	100	49.166	ENSPFOG00000012560	tnrc6c1	98	53.653	Poecilia_formosa
ENSEASG00005004799	TNRC6C	100	49.333	ENSPLAG00000021055	tnrc6c1	97	49.685	Poecilia_latipinna
ENSEASG00005004799	TNRC6C	100	89.571	ENSPPYG00000008679	TNRC6C	88	89.571	Pongo_abelii
ENSEASG00005004799	TNRC6C	95	92.671	ENSPCAG00000012510	TNRC6C	86	92.671	Procavia_capensis
ENSEASG00005004799	TNRC6C	100	92.485	ENSPCOG00000021451	TNRC6C	100	92.426	Propithecus_coquereli
ENSEASG00005004799	TNRC6C	96	95.763	ENSPVAG00000002008	TNRC6C	93	95.763	Pteropus_vampyrus
ENSEASG00005004799	TNRC6C	100	47.439	ENSPNYG00000014477	tnrc6c1	91	50.200	Pundamilia_nyererei
ENSEASG00005004799	TNRC6C	100	89.639	ENSRNOG00000022395	Tnrc6c	100	89.402	Rattus_norvegicus
ENSEASG00005004799	TNRC6C	100	91.124	ENSRBIG00000027777	TNRC6C	100	91.065	Rhinopithecus_bieti
ENSEASG00005004799	TNRC6C	100	91.183	ENSRROG00000042912	TNRC6C	100	91.124	Rhinopithecus_roxellana
ENSEASG00005004799	TNRC6C	100	88.818	ENSSBOG00000023981	TNRC6C	100	88.818	Saimiri_boliviensis_boliviensis
ENSEASG00005004799	TNRC6C	52	86.364	ENSSHAG00000018330	-	100	85.606	Sarcophilus_harrisii
ENSEASG00005004799	TNRC6C	53	57.128	ENSSFOG00015004735	-	99	60.995	Scleropages_formosus
ENSEASG00005004799	TNRC6C	79	58.652	ENSSFOG00015006475	tnrc6c1	92	51.394	Scleropages_formosus
ENSEASG00005004799	TNRC6C	100	48.529	ENSSMAG00000012761	tnrc6c1	99	49.971	Scophthalmus_maximus
ENSEASG00005004799	TNRC6C	100	50.658	ENSSDUG00000002366	tnrc6c1	91	52.148	Seriola_dumerili
ENSEASG00005004799	TNRC6C	100	49.056	ENSSLDG00000025613	tnrc6c1	97	50.000	Seriola_lalandi_dorsalis
ENSEASG00005004799	TNRC6C	91	95.798	ENSSARG00000006816	TNRC6C	88	95.798	Sorex_araneus
ENSEASG00005004799	TNRC6C	82	83.727	ENSSPUG00000007341	TNRC6C	91	83.727	Sphenodon_punctatus
ENSEASG00005004799	TNRC6C	78	54.102	ENSSPAG00000014977	tnrc6c1	90	50.115	Stegastes_partitus
ENSEASG00005004799	TNRC6C	100	87.537	ENSSSCG00000034373	TNRC6C	100	88.618	Sus_scrofa
ENSEASG00005004799	TNRC6C	100	87.744	ENSTGUG00000007733	TNRC6C	97	87.863	Taeniopygia_guttata
ENSEASG00005004799	TNRC6C	79	53.479	ENSTRUG00000011685	tnrc6c1	97	49.461	Takifugu_rubripes
ENSEASG00005004799	TNRC6C	95	54.722	ENSTNIG00000005273	tnrc6c1	100	59.060	Tetraodon_nigroviridis
ENSEASG00005004799	TNRC6C	64	87.938	ENSTBEG00000005046	TNRC6C	95	87.938	Tupaia_belangeri
ENSEASG00005004799	TNRC6C	100	92.536	ENSTTRG00000010828	TNRC6C	97	92.595	Tursiops_truncatus
ENSEASG00005004799	TNRC6C	100	90.501	ENSUMAG00000013614	TNRC6C	90	90.501	Ursus_maritimus
ENSEASG00005004799	TNRC6C	52	82.991	ENSVPAG00000006765	-	100	82.991	Vicugna_pacos
ENSEASG00005004799	TNRC6C	100	93.234	ENSVVUG00000015268	TNRC6C	100	93.234	Vulpes_vulpes
ENSEASG00005004799	TNRC6C	100	74.442	ENSXETG00000019470	tnrc6c	100	74.074	Xenopus_tropicalis
ENSEASG00005004799	TNRC6C	100	50.259	ENSXMAG00000025971	tnrc6c1	97	47.332	Xiphophorus_maculatus