EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEASG00005007392 (Gene tree)
Gene ID: -
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Minus strand
Length: 112771 bases
Position: chrPSZQ01006875.1:3492775-3605545
Accession: 9757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005010436	R3H	PF01424.22	2.2e-11	1	1
ENSEASP00005010424	R3H	PF01424.22	2.3e-11	1	1
ENSEASP00005010419	R3H	PF01424.22	2.4e-11	1	1
ENSEASP00005010417	R3H	PF01424.22	2.4e-11	1	1
ENSEASP00005010431	R3H	PF01424.22	1.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005011337	R3HDM1-201	3648	-	ENSEASP00005010417	1132 (aa)	-	UPI00071A359A
ENSEAST00005011356	R3HDM1-205	3393	-	ENSEASP00005010436	1047 (aa)	-	UPI00071A07D9
ENSEAST00005011344	R3HDM1-203	3516	-	ENSEASP00005010424	1088 (aa)	-	UPI00071A4D22
ENSEAST00005011351	R3HDM1-204	3456	-	ENSEASP00005010431	1068 (aa)	-	-
ENSEAST00005011339	R3HDM1-202	3546	-	ENSEASP00005010419	1098 (aa)	-	UPI00071A213F

Gene Model

Click here to download ENSEASG00005007392's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005007392's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEASG00005007392	R3HDM1	86	62.435	ENSEASG00005007091	R3HDM2	95	60.244
ENSEASG00005007392	R3HDM1	65	61.081	ENSEASG00005007331	ARPP21	92	50.680

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005007392	R3HDM1	100	95.286	ENSG00000048991	R3HDM1	100	98.066	Homo_sapiens
ENSEASG00005007392	R3HDM1	89	62.053	ENSAPOG00000020850	r3hdm1	92	61.814	Acanthochromis_polyacanthus
ENSEASG00005007392	R3HDM1	100	97.099	ENSAMEG00000014886	R3HDM1	100	97.099	Ailuropoda_melanoleuca
ENSEASG00005007392	R3HDM1	88	61.814	ENSAOCG00000005192	r3hdm1	95	61.575	Amphiprion_ocellaris
ENSEASG00005007392	R3HDM1	88	56.325	ENSAPEG00000016108	r3hdm1	95	56.325	Amphiprion_percula
ENSEASG00005007392	R3HDM1	88	56.459	ENSATEG00000000232	r3hdm1	99	48.206	Anabas_testudineus
ENSEASG00005007392	R3HDM1	100	79.710	ENSAPLG00000015231	R3HDM1	100	79.891	Anas_platyrhynchos
ENSEASG00005007392	R3HDM1	100	85.222	ENSACAG00000001676	R3HDM1	100	80.334	Anolis_carolinensis
ENSEASG00005007392	R3HDM1	100	95.290	ENSANAG00000035334	R3HDM1	100	97.238	Aotus_nancymaae
ENSEASG00005007392	R3HDM1	78	68.269	ENSACLG00000027282	r3hdm1	89	68.269	Astatotilapia_calliptera
ENSEASG00005007392	R3HDM1	100	72.596	ENSAMXG00000012861	R3HDM1	100	72.596	Astyanax_mexicanus
ENSEASG00005007392	R3HDM1	61	40.456	ENSAMXG00000020587	arpp21	85	59.514	Astyanax_mexicanus
ENSEASG00005007392	R3HDM1	87	74.286	ENSAMXG00000003536	r3hdm1	91	72.861	Astyanax_mexicanus
ENSEASG00005007392	R3HDM1	100	95.852	ENSBTAG00000013302	R3HDM1	100	95.852	Bos_taurus
ENSEASG00005007392	R3HDM1	100	95.463	ENSCJAG00000011718	R3HDM1	100	97.238	Callithrix_jacchus
ENSEASG00005007392	R3HDM1	100	97.552	ENSCAFG00000005075	R3HDM1	100	97.552	Canis_familiaris
ENSEASG00005007392	R3HDM1	100	99.261	ENSCAFG00020016119	R3HDM1	100	97.641	Canis_lupus_dingo
ENSEASG00005007392	R3HDM1	100	95.814	ENSCHIG00000020851	R3HDM1	100	95.814	Capra_hircus
ENSEASG00005007392	R3HDM1	100	93.103	ENSCPOG00000012784	R3HDM1	100	92.531	Cavia_porcellus
ENSEASG00005007392	R3HDM1	100	95.100	ENSCCAG00000027199	R3HDM1	100	96.409	Cebus_capucinus
ENSEASG00005007392	R3HDM1	100	97.476	ENSCATG00000023642	R3HDM1	100	97.514	Cercocebus_atys
ENSEASG00005007392	R3HDM1	100	95.074	ENSCLAG00000007962	R3HDM1	100	92.091	Chinchilla_lanigera
ENSEASG00005007392	R3HDM1	100	97.291	ENSCSAG00000016356	R3HDM1	100	94.283	Chlorocebus_sabaeus
ENSEASG00005007392	R3HDM1	87	84.732	ENSCHOG00000013638	R3HDM1	91	84.457	Choloepus_hoffmanni
ENSEASG00005007392	R3HDM1	87	91.144	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSEASG00005007392	R3HDM1	100	94.837	ENSCANG00000034748	R3HDM1	100	97.238	Colobus_angolensis_palliatus
ENSEASG00005007392	R3HDM1	99	95.320	ENSCGRG00001012357	R3hdm1	97	91.615	Cricetulus_griseus_chok1gshd
ENSEASG00005007392	R3HDM1	100	95.320	ENSCGRG00000012080	R3hdm1	100	91.557	Cricetulus_griseus_crigri
ENSEASG00005007392	R3HDM1	88	56.835	ENSCSEG00000008944	r3hdm1	85	64.918	Cynoglossus_semilaevis
ENSEASG00005007392	R3HDM1	88	59.905	ENSCVAG00000007582	r3hdm1	91	59.666	Cyprinodon_variegatus
ENSEASG00005007392	R3HDM1	65	37.968	ENSDARG00000061081	arpp21	71	41.255	Danio_rerio
ENSEASG00005007392	R3HDM1	100	91.855	ENSDNOG00000000771	R3HDM1	100	91.855	Dasypus_novemcinctus
ENSEASG00005007392	R3HDM1	92	92.629	ENSETEG00000013606	R3HDM1	100	84.076	Echinops_telfairi
ENSEASG00005007392	R3HDM1	65	42.021	ENSEBUG00000014746	arpp21	97	43.445	Eptatretus_burgeri
ENSEASG00005007392	R3HDM1	100	99.727	ENSECAG00000019114	R3HDM1	100	99.727	Equus_caballus
ENSEASG00005007392	R3HDM1	91	87.454	ENSEEUG00000012589	R3HDM1	91	87.085	Erinaceus_europaeus
ENSEASG00005007392	R3HDM1	88	66.430	ENSELUG00000004909	R3HDM1	99	55.847	Esox_lucius
ENSEASG00005007392	R3HDM1	93	50.991	ENSELUG00000014413	r3hdm1	90	68.529	Esox_lucius
ENSEASG00005007392	R3HDM1	100	97.543	ENSFCAG00000027113	R3HDM1	100	97.543	Felis_catus
ENSEASG00005007392	R3HDM1	75	76.023	ENSFALG00000013731	R3HDM1	93	70.811	Ficedula_albicollis
ENSEASG00005007392	R3HDM1	100	95.074	ENSFDAG00000016478	R3HDM1	99	95.018	Fukomys_damarensis
ENSEASG00005007392	R3HDM1	88	60.143	ENSFHEG00000018713	r3hdm1	91	59.666	Fundulus_heteroclitus
ENSEASG00005007392	R3HDM1	64	66.939	ENSGMOG00000006042	-	74	69.783	Gadus_morhua
ENSEASG00005007392	R3HDM1	100	71.209	ENSGALG00000012246	R3HDM1	99	85.246	Gallus_gallus
ENSEASG00005007392	R3HDM1	89	46.979	ENSGAFG00000006203	r3hdm1	89	68.608	Gambusia_affinis
ENSEASG00005007392	R3HDM1	86	66.379	ENSGACG00000014925	r3hdm1	94	66.569	Gasterosteus_aculeatus
ENSEASG00005007392	R3HDM1	100	78.857	ENSGAGG00000007840	R3HDM1	100	78.312	Gopherus_agassizii
ENSEASG00005007392	R3HDM1	100	94.923	ENSGGOG00000008156	R3HDM1	100	98.066	Gorilla_gorilla
ENSEASG00005007392	R3HDM1	100	95.074	ENSHGLG00000015718	R3HDM1	99	94.834	Heterocephalus_glaber_female
ENSEASG00005007392	R3HDM1	100	70.642	ENSHGLG00100015374	-	100	70.642	Heterocephalus_glaber_male
ENSEASG00005007392	R3HDM1	100	94.828	ENSHGLG00100003184	-	100	92.504	Heterocephalus_glaber_male
ENSEASG00005007392	R3HDM1	78	65.909	ENSHCOG00000013366	r3hdm1	85	66.883	Hippocampus_comes
ENSEASG00005007392	R3HDM1	62	35.608	ENSIPUG00000020552	arpp21	85	35.651	Ictalurus_punctatus
ENSEASG00005007392	R3HDM1	93	61.140	ENSIPUG00000013629	r3hdm1	95	69.062	Ictalurus_punctatus
ENSEASG00005007392	R3HDM1	88	61.391	ENSIPUG00000001676	R3HDM1	99	66.029	Ictalurus_punctatus
ENSEASG00005007392	R3HDM1	100	96.305	ENSSTOG00000007572	R3HDM1	99	96.679	Ictidomys_tridecemlineatus
ENSEASG00005007392	R3HDM1	95	83.799	ENSLACG00000005334	R3HDM1	100	74.340	Latimeria_chalumnae
ENSEASG00005007392	R3HDM1	100	76.513	ENSLOCG00000001641	r3hdm1	100	66.522	Lepisosteus_oculatus
ENSEASG00005007392	R3HDM1	100	95.242	ENSLAFG00000009065	R3HDM1	100	95.154	Loxodonta_africana
ENSEASG00005007392	R3HDM1	100	95.376	ENSMFAG00000030331	R3HDM1	100	98.066	Macaca_fascicularis
ENSEASG00005007392	R3HDM1	100	94.918	ENSMMUG00000009844	R3HDM1	100	98.066	Macaca_mulatta
ENSEASG00005007392	R3HDM1	100	95.195	ENSMNEG00000027793	R3HDM1	100	98.066	Macaca_nemestrina
ENSEASG00005007392	R3HDM1	100	95.286	ENSMLEG00000043189	R3HDM1	100	98.066	Mandrillus_leucophaeus
ENSEASG00005007392	R3HDM1	88	60.859	ENSMAMG00000004532	r3hdm1	91	60.859	Mastacembelus_armatus
ENSEASG00005007392	R3HDM1	88	60.859	ENSMZEG00005003157	r3hdm1	89	68.269	Maylandia_zebra
ENSEASG00005007392	R3HDM1	99	83.831	ENSMGAG00000012461	R3HDM1	100	79.238	Meleagris_gallopavo
ENSEASG00005007392	R3HDM1	100	95.813	ENSMAUG00000010315	R3hdm1	100	91.694	Mesocricetus_auratus
ENSEASG00005007392	R3HDM1	95	84.930	ENSMICG00000042655	-	100	96.409	Microcebus_murinus
ENSEASG00005007392	R3HDM1	100	93.931	ENSMICG00000005900	-	100	96.685	Microcebus_murinus
ENSEASG00005007392	R3HDM1	89	87.799	ENSMODG00000000923	R3HDM1	97	82.459	Monodelphis_domestica
ENSEASG00005007392	R3HDM1	99	59.762	ENSMALG00000009000	r3hdm1	92	60.000	Monopterus_albus
ENSEASG00005007392	R3HDM1	100	94.581	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.979	Mus_caroli
ENSEASG00005007392	R3HDM1	100	94.581	ENSMUSG00000056211	R3hdm1	100	94.979	Mus_musculus
ENSEASG00005007392	R3HDM1	100	94.335	MGP_PahariEiJ_G0027779	R3hdm1	100	94.979	Mus_pahari
ENSEASG00005007392	R3HDM1	100	94.581	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.979	Mus_spretus
ENSEASG00005007392	R3HDM1	100	97.094	ENSMPUG00000002412	R3HDM1	100	97.094	Mustela_putorius_furo
ENSEASG00005007392	R3HDM1	100	94.937	ENSMLUG00000013824	R3HDM1	100	94.756	Myotis_lucifugus
ENSEASG00005007392	R3HDM1	100	95.104	ENSNLEG00000008622	R3HDM1	100	97.514	Nomascus_leucogenys
ENSEASG00005007392	R3HDM1	89	74.438	ENSMEUG00000011784	R3HDM1	100	74.438	Notamacropus_eugenii
ENSEASG00005007392	R3HDM1	100	96.059	ENSODEG00000008607	R3HDM1	100	91.461	Octodon_degus
ENSEASG00005007392	R3HDM1	94	65.928	ENSONIG00000012017	r3hdm1	93	66.185	Oreochromis_niloticus
ENSEASG00005007392	R3HDM1	100	82.534	ENSOANG00000007987	R3HDM1	100	82.534	Ornithorhynchus_anatinus
ENSEASG00005007392	R3HDM1	89	93.591	ENSOCUG00000017366	R3HDM1	98	93.591	Oryctolagus_cuniculus
ENSEASG00005007392	R3HDM1	88	60.382	ENSORLG00000004297	r3hdm1	86	67.419	Oryzias_latipes
ENSEASG00005007392	R3HDM1	88	60.621	ENSORLG00015017355	r3hdm1	85	67.742	Oryzias_latipes_hsok
ENSEASG00005007392	R3HDM1	50	55.793	ENSOMEG00000003882	-	94	57.744	Oryzias_melastigma
ENSEASG00005007392	R3HDM1	100	94.273	ENSOGAG00000003136	R3HDM1	100	94.364	Otolemur_garnettii
ENSEASG00005007392	R3HDM1	100	95.541	ENSOARG00000010788	R3HDM1	100	95.541	Ovis_aries
ENSEASG00005007392	R3HDM1	100	95.113	ENSPPAG00000027858	R3HDM1	100	98.066	Pan_paniscus
ENSEASG00005007392	R3HDM1	100	97.270	ENSPPRG00000002626	R3HDM1	100	98.895	Panthera_pardus
ENSEASG00005007392	R3HDM1	100	97.270	ENSPTIG00000016581	R3HDM1	100	99.171	Panthera_tigris_altaica
ENSEASG00005007392	R3HDM1	100	94.746	ENSPTRG00000012494	R3HDM1	100	98.066	Pan_troglodytes
ENSEASG00005007392	R3HDM1	100	95.195	ENSPANG00000026448	R3HDM1	100	98.066	Papio_anubis
ENSEASG00005007392	R3HDM1	87	76.433	ENSPKIG00000004328	r3hdm1	91	76.508	Paramormyrops_kingsleyae
ENSEASG00005007392	R3HDM1	100	78.857	ENSPSIG00000012915	R3HDM1	100	78.766	Pelodiscus_sinensis
ENSEASG00005007392	R3HDM1	100	94.828	ENSPEMG00000015187	R3hdm1	100	91.982	Peromyscus_maniculatus_bairdii
ENSEASG00005007392	R3HDM1	100	86.228	ENSPCIG00000002491	R3HDM1	100	90.931	Phascolarctos_cinereus
ENSEASG00005007392	R3HDM1	88	59.145	ENSPFOG00000015036	r3hdm1	91	58.907	Poecilia_formosa
ENSEASG00005007392	R3HDM1	89	47.030	ENSPLAG00000018042	r3hdm1	86	65.732	Poecilia_latipinna
ENSEASG00005007392	R3HDM1	89	47.271	ENSPMEG00000023947	r3hdm1	86	65.732	Poecilia_mexicana
ENSEASG00005007392	R3HDM1	88	59.716	ENSPREG00000007902	r3hdm1	88	68.285	Poecilia_reticulata
ENSEASG00005007392	R3HDM1	100	94.016	ENSPPYG00000012815	R3HDM1	100	93.291	Pongo_abelii
ENSEASG00005007392	R3HDM1	98	93.313	ENSPCAG00000006208	R3HDM1	90	93.030	Procavia_capensis
ENSEASG00005007392	R3HDM1	100	92.301	ENSPCOG00000012698	R3HDM1	100	93.312	Propithecus_coquereli
ENSEASG00005007392	R3HDM1	100	91.872	ENSPVAG00000006098	R3HDM1	100	87.047	Pteropus_vampyrus
ENSEASG00005007392	R3HDM1	54	58.400	ENSPNAG00000004162	arpp21	57	58.400	Pygocentrus_nattereri
ENSEASG00005007392	R3HDM1	83	76.282	ENSPNAG00000005436	R3HDM1	99	76.206	Pygocentrus_nattereri
ENSEASG00005007392	R3HDM1	87	74.286	ENSPNAG00000013952	r3hdm1	89	74.204	Pygocentrus_nattereri
ENSEASG00005007392	R3HDM1	100	94.089	ENSRNOG00000004099	R3hdm1	100	90.291	Rattus_norvegicus
ENSEASG00005007392	R3HDM1	100	93.297	ENSRBIG00000033317	R3HDM1	100	98.893	Rhinopithecus_bieti
ENSEASG00005007392	R3HDM1	100	94.651	ENSRROG00000034534	R3HDM1	100	97.790	Rhinopithecus_roxellana
ENSEASG00005007392	R3HDM1	100	94.832	ENSSBOG00000020389	R3HDM1	100	96.685	Saimiri_boliviensis_boliviensis
ENSEASG00005007392	R3HDM1	100	86.376	ENSSHAG00000016999	R3HDM1	100	86.376	Sarcophilus_harrisii
ENSEASG00005007392	R3HDM1	100	70.874	ENSSFOG00015014134	r3hdm1	100	70.874	Scleropages_formosus
ENSEASG00005007392	R3HDM1	100	56.990	ENSSFOG00015019851	-	96	63.419	Scleropages_formosus
ENSEASG00005007392	R3HDM1	99	44.710	ENSSMAG00000001669	r3hdm1	99	44.923	Scophthalmus_maximus
ENSEASG00005007392	R3HDM1	89	47.383	ENSSDUG00000010749	r3hdm1	99	47.897	Seriola_dumerili
ENSEASG00005007392	R3HDM1	99	47.405	ENSSLDG00000004499	r3hdm1	99	47.437	Seriola_lalandi_dorsalis
ENSEASG00005007392	R3HDM1	73	83.721	ENSSARG00000000352	-	69	83.721	Sorex_araneus
ENSEASG00005007392	R3HDM1	100	81.324	ENSSPUG00000004167	R3HDM1	100	81.142	Sphenodon_punctatus
ENSEASG00005007392	R3HDM1	89	49.429	ENSSPAG00000004648	r3hdm1	91	61.814	Stegastes_partitus
ENSEASG00005007392	R3HDM1	100	96.730	ENSSSCG00000015692	R3HDM1	100	96.730	Sus_scrofa
ENSEASG00005007392	R3HDM1	100	73.937	ENSTGUG00000011750	R3HDM1	100	74.027	Taeniopygia_guttata
ENSEASG00005007392	R3HDM1	78	67.097	ENSTRUG00000011654	r3hdm1	84	67.097	Takifugu_rubripes
ENSEASG00005007392	R3HDM1	86	46.014	ENSTNIG00000010362	r3hdm1	95	46.872	Tetraodon_nigroviridis
ENSEASG00005007392	R3HDM1	100	89.617	ENSTTRG00000003935	R3HDM1	100	89.617	Tursiops_truncatus
ENSEASG00005007392	R3HDM1	70	97.548	ENSUAMG00000024806	R3HDM1	99	96.494	Ursus_americanus
ENSEASG00005007392	R3HDM1	100	93.578	ENSUMAG00000005552	R3HDM1	100	99.448	Ursus_maritimus
ENSEASG00005007392	R3HDM1	97	100.000	ENSVPAG00000007333	R3HDM1	93	100.000	Vicugna_pacos
ENSEASG00005007392	R3HDM1	100	99.015	ENSVVUG00000006457	R3HDM1	100	97.621	Vulpes_vulpes
ENSEASG00005007392	R3HDM1	89	67.778	ENSXETG00000019330	r3hdm1	100	67.475	Xenopus_tropicalis
ENSEASG00005007392	R3HDM1	71	47.922	ENSXCOG00000017448	r3hdm1	94	50.192	Xiphophorus_couchianus
ENSEASG00005007392	R3HDM1	88	60.621	ENSXMAG00000007885	r3hdm1	91	60.621	Xiphophorus_maculatus