EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEASG00005008218 (Gene tree)
Gene ID: -
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Plus strand
Length: 60446 bases
Position: chrPSZQ01008279.1:518805-579250
Accession: 11097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005015539	ResIII	PF04851.15	4.7e-12	1	1
ENSEASP00005015538	ResIII	PF04851.15	4.8e-12	1	1
ENSEASP00005015537	ResIII	PF04851.15	4.9e-12	1	1
ENSEASP00005015543	ResIII	PF04851.15	4.9e-12	1	1
ENSEASP00005015541	ResIII	PF04851.15	5e-12	1	1
ENSEASP00005015540	ResIII	PF04851.15	5.1e-12	1	1
ENSEASP00005015542	ResIII	PF04851.15	5.3e-12	1	1
ENSEASP00005015546	ResIII	PF04851.15	5.9e-12	1	1
ENSEASP00005015543	DEAD	PF00270.29	1.5e-06	1	1
ENSEASP00005015540	DEAD	PF00270.29	1.5e-06	1	1
ENSEASP00005015539	DEAD	PF00270.29	1.5e-06	1	1
ENSEASP00005015538	DEAD	PF00270.29	1.5e-06	1	1
ENSEASP00005015542	DEAD	PF00270.29	1.5e-06	1	1
ENSEASP00005015541	DEAD	PF00270.29	1.6e-06	1	1
ENSEASP00005015537	DEAD	PF00270.29	1.6e-06	1	1
ENSEASP00005015546	DEAD	PF00270.29	2.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005016909	SMARCA1-208	2697	-	ENSEASP00005015546	898 (aa)	-	-
ENSEAST00005016904	SMARCA1-205	2997	-	ENSEASP00005015541	998 (aa)	-	-
ENSEAST00005016905	SMARCA1-206	2976	-	ENSEASP00005015542	991 (aa)	-	-
ENSEAST00005016906	SMARCA1-207	2904	-	ENSEASP00005015543	967 (aa)	-	-
ENSEAST00005016900	SMARCA1-201	3009	-	ENSEASP00005015537	1002 (aa)	-	-
ENSEAST00005016901	SMARCA1-202	2964	-	ENSEASP00005015538	987 (aa)	-	-
ENSEAST00005016902	SMARCA1-203	2952	-	ENSEASP00005015539	983 (aa)	-	-
ENSEAST00005016903	SMARCA1-204	2931	-	ENSEASP00005015540	976 (aa)	-	-

Gene Model

Click here to download ENSEASG00005008218's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005008218's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEASG00005008218	SMARCA1	54	42.210	ENSEASG00005023433	CHD6	75	40.000
ENSEASG00005008218	SMARCA1	59	42.732	ENSEASG00005007364	CHD1L	63	43.043
ENSEASG00005008218	SMARCA1	53	48.606	ENSEASG00005011764	HELLS	65	57.143
ENSEASG00005008218	SMARCA1	99	81.781	ENSEASG00005001866	SMARCA5	97	85.104
ENSEASG00005008218	SMARCA1	50	32.252	ENSEASG00005004511	RAD54L	75	32.252

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005008218	SMARCA1	100	93.333	ENSG00000102038	SMARCA1	97	92.692	Homo_sapiens
ENSEASG00005008218	SMARCA1	99	79.735	ENSAPOG00000016035	smarca5	96	80.931	Acanthochromis_polyacanthus
ENSEASG00005008218	SMARCA1	99	93.936	ENSAMEG00000015218	SMARCA1	97	92.692	Ailuropoda_melanoleuca
ENSEASG00005008218	SMARCA1	92	80.858	ENSACIG00000016982	smarca5	99	81.153	Amphilophus_citrinellus
ENSEASG00005008218	SMARCA1	99	79.735	ENSAOCG00000015578	smarca5	95	78.068	Amphiprion_ocellaris
ENSEASG00005008218	SMARCA1	99	79.735	ENSAPEG00000011117	smarca5	99	80.913	Amphiprion_percula
ENSEASG00005008218	SMARCA1	99	79.352	ENSATEG00000012894	smarca5	95	78.947	Anabas_testudineus
ENSEASG00005008218	SMARCA1	99	88.664	ENSAPLG00000013149	SMARCA1	100	88.259	Anas_platyrhynchos
ENSEASG00005008218	SMARCA1	100	87.867	ENSACAG00000011376	SMARCA1	95	86.660	Anolis_carolinensis
ENSEASG00005008218	SMARCA1	100	88.182	ENSANAG00000023098	SMARCA1	94	87.462	Aotus_nancymaae
ENSEASG00005008218	SMARCA1	99	79.656	ENSACLG00000025356	smarca5	95	78.370	Astatotilapia_calliptera
ENSEASG00005008218	SMARCA1	95	82.158	ENSAMXG00000005709	smarca5	94	80.021	Astyanax_mexicanus
ENSEASG00005008218	SMARCA1	94	83.761	ENSAMXG00000011227	smarca1	98	87.105	Astyanax_mexicanus
ENSEASG00005008218	SMARCA1	99	94.831	ENSBTAG00000002292	SMARCA1	96	94.831	Bos_taurus
ENSEASG00005008218	SMARCA1	99	60.887	WBGene00002169	isw-1	97	60.826	Caenorhabditis_elegans
ENSEASG00005008218	SMARCA1	100	93.333	ENSCJAG00000002868	SMARCA1	97	92.500	Callithrix_jacchus
ENSEASG00005008218	SMARCA1	100	83.019	ENSCAFG00000018673	SMARCA1	99	83.547	Canis_familiaris
ENSEASG00005008218	SMARCA1	100	93.838	ENSCAFG00020001751	SMARCA1	97	92.308	Canis_lupus_dingo
ENSEASG00005008218	SMARCA1	99	94.732	ENSCHIG00000009837	SMARCA1	95	94.732	Capra_hircus
ENSEASG00005008218	SMARCA1	100	93.232	ENSTSYG00000004240	SMARCA1	97	93.750	Carlito_syrichta
ENSEASG00005008218	SMARCA1	100	92.169	ENSCPOG00000013601	SMARCA1	96	92.807	Cavia_porcellus
ENSEASG00005008218	SMARCA1	100	90.000	ENSCCAG00000030817	SMARCA1	94	89.268	Cebus_capucinus
ENSEASG00005008218	SMARCA1	99	93.936	ENSCATG00000015921	SMARCA1	97	92.692	Cercocebus_atys
ENSEASG00005008218	SMARCA1	100	92.626	ENSCLAG00000002171	SMARCA1	95	92.445	Chinchilla_lanigera
ENSEASG00005008218	SMARCA1	100	93.333	ENSCSAG00000008460	SMARCA1	97	91.538	Chlorocebus_sabaeus
ENSEASG00005008218	SMARCA1	100	88.990	ENSCPBG00000001146	SMARCA1	94	87.500	Chrysemys_picta_bellii
ENSEASG00005008218	SMARCA1	99	71.297	ENSCING00000004110	swi/snf	98	70.161	Ciona_intestinalis
ENSEASG00005008218	SMARCA1	99	71.168	ENSCSAVG00000004620	-	93	80.874	Ciona_savignyi
ENSEASG00005008218	SMARCA1	100	93.232	ENSCANG00000007183	SMARCA1	97	92.596	Colobus_angolensis_palliatus
ENSEASG00005008218	SMARCA1	100	92.020	ENSCGRG00001010776	Smarca1	94	90.873	Cricetulus_griseus_chok1gshd
ENSEASG00005008218	SMARCA1	97	92.092	ENSCGRG00000015301	Smarca1	97	91.709	Cricetulus_griseus_crigri
ENSEASG00005008218	SMARCA1	99	79.837	ENSCSEG00000000328	smarca5	95	78.947	Cynoglossus_semilaevis
ENSEASG00005008218	SMARCA1	99	79.251	ENSCVAG00000008668	smarca5	97	82.704	Cyprinodon_variegatus
ENSEASG00005008218	SMARCA1	95	81.410	ENSDARG00000052348	smarca5	94	79.381	Danio_rerio
ENSEASG00005008218	SMARCA1	99	81.836	ENSDARG00000012776	smarca1	97	80.674	Danio_rerio
ENSEASG00005008218	SMARCA1	98	92.792	ENSDNOG00000004315	SMARCA1	94	92.316	Dasypus_novemcinctus
ENSEASG00005008218	SMARCA1	99	91.767	ENSDORG00000009270	Smarca1	93	92.754	Dipodomys_ordii
ENSEASG00005008218	SMARCA1	95	71.292	FBgn0011604	Iswi	97	69.392	Drosophila_melanogaster
ENSEASG00005008218	SMARCA1	83	93.750	ENSETEG00000017426	SMARCA1	85	93.750	Echinops_telfairi
ENSEASG00005008218	SMARCA1	99	77.563	ENSEBUG00000001239	smarca5	96	76.954	Eptatretus_burgeri
ENSEASG00005008218	SMARCA1	99	95.491	ENSECAG00000012106	SMARCA1	94	95.491	Equus_caballus
ENSEASG00005008218	SMARCA1	80	95.033	ENSEEUG00000014927	SMARCA1	83	95.033	Erinaceus_europaeus
ENSEASG00005008218	SMARCA1	100	83.266	ENSELUG00000010515	smarca1	97	82.421	Esox_lucius
ENSEASG00005008218	SMARCA1	100	93.737	ENSFCAG00000018496	SMARCA1	97	93.269	Felis_catus
ENSEASG00005008218	SMARCA1	92	89.704	ENSFALG00000000209	SMARCA1	98	89.376	Ficedula_albicollis
ENSEASG00005008218	SMARCA1	97	93.313	ENSFDAG00000009818	SMARCA1	97	93.110	Fukomys_damarensis
ENSEASG00005008218	SMARCA1	99	79.757	ENSFHEG00000007687	smarca5	94	79.150	Fundulus_heteroclitus
ENSEASG00005008218	SMARCA1	98	87.500	ENSGALG00000008431	SMARCA1	96	88.627	Gallus_gallus
ENSEASG00005008218	SMARCA1	99	79.555	ENSGAFG00000017731	smarca5	95	79.150	Gambusia_affinis
ENSEASG00005008218	SMARCA1	99	88.968	ENSGAGG00000023575	SMARCA1	100	88.458	Gopherus_agassizii
ENSEASG00005008218	SMARCA1	75	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSEASG00005008218	SMARCA1	100	92.020	ENSHGLG00000003080	SMARCA1	95	92.048	Heterocephalus_glaber_female
ENSEASG00005008218	SMARCA1	100	91.466	ENSHGLG00100001102	SMARCA1	99	91.127	Heterocephalus_glaber_male
ENSEASG00005008218	SMARCA1	99	79.776	ENSHCOG00000005458	smarca5	95	79.049	Hippocampus_comes
ENSEASG00005008218	SMARCA1	99	82.335	ENSIPUG00000016905	Smarca1	99	81.827	Ictalurus_punctatus
ENSEASG00005008218	SMARCA1	95	81.517	ENSIPUG00000005229	SMARCA5	97	78.384	Ictalurus_punctatus
ENSEASG00005008218	SMARCA1	100	93.030	ENSSTOG00000014524	SMARCA1	97	91.058	Ictidomys_tridecemlineatus
ENSEASG00005008218	SMARCA1	99	92.246	ENSJJAG00000002593	Smarca1	93	92.418	Jaculus_jaculus
ENSEASG00005008218	SMARCA1	99	79.675	ENSKMAG00000003777	smarca5	95	79.150	Kryptolebias_marmoratus
ENSEASG00005008218	SMARCA1	99	79.150	ENSLBEG00000018112	smarca5	95	78.745	Labrus_bergylta
ENSEASG00005008218	SMARCA1	93	80.932	ENSLBEG00000013295	SMARCA1	100	82.301	Labrus_bergylta
ENSEASG00005008218	SMARCA1	100	86.451	ENSLACG00000016697	SMARCA1	98	85.456	Latimeria_chalumnae
ENSEASG00005008218	SMARCA1	100	85.844	ENSLOCG00000014591	smarca1	96	85.238	Lepisosteus_oculatus
ENSEASG00005008218	SMARCA1	100	92.060	ENSLAFG00000000896	SMARCA1	99	92.441	Loxodonta_africana
ENSEASG00005008218	SMARCA1	100	93.333	ENSMFAG00000002117	SMARCA1	97	93.750	Macaca_fascicularis
ENSEASG00005008218	SMARCA1	99	93.936	ENSMMUG00000008818	SMARCA1	99	93.481	Macaca_mulatta
ENSEASG00005008218	SMARCA1	99	93.936	ENSMNEG00000041768	SMARCA1	97	93.750	Macaca_nemestrina
ENSEASG00005008218	SMARCA1	100	93.333	ENSMLEG00000043198	SMARCA1	97	92.692	Mandrillus_leucophaeus
ENSEASG00005008218	SMARCA1	99	79.656	ENSMAMG00000014294	smarca5	95	78.370	Mastacembelus_armatus
ENSEASG00005008218	SMARCA1	99	79.656	ENSMZEG00005009369	smarca5	95	78.370	Maylandia_zebra
ENSEASG00005008218	SMARCA1	100	87.512	ENSMGAG00000007042	SMARCA1	99	86.323	Meleagris_gallopavo
ENSEASG00005008218	SMARCA1	97	92.938	ENSMAUG00000008133	Smarca1	93	92.323	Mesocricetus_auratus
ENSEASG00005008218	SMARCA1	100	93.232	ENSMICG00000015768	SMARCA1	97	92.596	Microcebus_murinus
ENSEASG00005008218	SMARCA1	100	91.759	ENSMOCG00000009464	Smarca1	93	92.276	Microtus_ochrogaster
ENSEASG00005008218	SMARCA1	99	77.733	ENSMMOG00000005547	smarca5	99	77.328	Mola_mola
ENSEASG00005008218	SMARCA1	100	88.081	ENSMODG00000013187	-	96	86.673	Monodelphis_domestica
ENSEASG00005008218	SMARCA1	99	79.370	ENSMALG00000002081	smarca5	96	79.896	Monopterus_albus
ENSEASG00005008218	SMARCA1	100	91.859	MGP_CAROLIEiJ_G0033034	Smarca1	92	94.922	Mus_caroli
ENSEASG00005008218	SMARCA1	100	91.960	ENSMUSG00000031099	Smarca1	92	95.063	Mus_musculus
ENSEASG00005008218	SMARCA1	100	91.859	MGP_PahariEiJ_G0031579	Smarca1	92	94.922	Mus_pahari
ENSEASG00005008218	SMARCA1	100	91.960	MGP_SPRETEiJ_G0034192	Smarca1	92	95.063	Mus_spretus
ENSEASG00005008218	SMARCA1	99	94.930	ENSMPUG00000017423	SMARCA1	91	93.462	Mustela_putorius_furo
ENSEASG00005008218	SMARCA1	100	91.916	ENSMLUG00000029614	SMARCA1	95	90.864	Myotis_lucifugus
ENSEASG00005008218	SMARCA1	97	93.443	ENSNGAG00000006492	Smarca1	95	92.843	Nannospalax_galili
ENSEASG00005008218	SMARCA1	99	79.757	ENSNBRG00000004463	smarca5	99	78.614	Neolamprologus_brichardi
ENSEASG00005008218	SMARCA1	100	92.115	ENSNLEG00000015179	SMARCA1	97	92.982	Nomascus_leucogenys
ENSEASG00005008218	SMARCA1	88	97.273	ENSMEUG00000008819	SMARCA1	91	97.273	Notamacropus_eugenii
ENSEASG00005008218	SMARCA1	99	92.346	ENSODEG00000012163	SMARCA1	95	92.247	Octodon_degus
ENSEASG00005008218	SMARCA1	99	79.757	ENSONIG00000009993	smarca5	95	78.715	Oreochromis_niloticus
ENSEASG00005008218	SMARCA1	99	88.753	ENSOANG00000002862	SMARCA1	100	88.458	Ornithorhynchus_anatinus
ENSEASG00005008218	SMARCA1	100	92.525	ENSOCUG00000001047	SMARCA1	94	92.377	Oryctolagus_cuniculus
ENSEASG00005008218	SMARCA1	99	79.776	ENSORLG00000021998	smarca5	95	78.370	Oryzias_latipes
ENSEASG00005008218	SMARCA1	99	79.878	ENSORLG00020017679	smarca5	95	78.471	Oryzias_latipes_hni
ENSEASG00005008218	SMARCA1	99	79.776	ENSORLG00015017210	smarca5	94	79.385	Oryzias_latipes_hsok
ENSEASG00005008218	SMARCA1	99	79.776	ENSOMEG00000000086	smarca5	94	79.385	Oryzias_melastigma
ENSEASG00005008218	SMARCA1	97	93.394	ENSOGAG00000004399	SMARCA1	95	93.241	Otolemur_garnettii
ENSEASG00005008218	SMARCA1	99	93.414	ENSOARG00000014638	SMARCA1	100	93.394	Ovis_aries
ENSEASG00005008218	SMARCA1	100	93.333	ENSPPAG00000034647	SMARCA1	97	92.692	Pan_paniscus
ENSEASG00005008218	SMARCA1	100	93.939	ENSPPRG00000008929	SMARCA1	97	93.462	Panthera_pardus
ENSEASG00005008218	SMARCA1	100	91.857	ENSPTIG00000000915	SMARCA1	98	91.707	Panthera_tigris_altaica
ENSEASG00005008218	SMARCA1	100	93.333	ENSPTRG00000049876	SMARCA1	97	92.692	Pan_troglodytes
ENSEASG00005008218	SMARCA1	100	93.333	ENSPANG00000003871	SMARCA1	97	92.692	Papio_anubis
ENSEASG00005008218	SMARCA1	94	84.640	ENSPKIG00000013411	smarca1	96	84.216	Paramormyrops_kingsleyae
ENSEASG00005008218	SMARCA1	99	88.662	ENSPSIG00000010101	SMARCA1	100	88.151	Pelodiscus_sinensis
ENSEASG00005008218	SMARCA1	97	93.693	ENSPEMG00000017503	Smarca1	95	92.744	Peromyscus_maniculatus_bairdii
ENSEASG00005008218	SMARCA1	100	88.396	ENSPCIG00000015460	SMARCA1	97	87.691	Phascolarctos_cinereus
ENSEASG00005008218	SMARCA1	99	79.776	ENSPFOG00000007649	smarca5	95	79.150	Poecilia_formosa
ENSEASG00005008218	SMARCA1	99	79.776	ENSPLAG00000003363	smarca5	95	79.150	Poecilia_latipinna
ENSEASG00005008218	SMARCA1	99	79.675	ENSPMEG00000019849	smarca5	95	79.049	Poecilia_mexicana
ENSEASG00005008218	SMARCA1	99	79.675	ENSPREG00000023250	smarca5	95	79.049	Poecilia_reticulata
ENSEASG00005008218	SMARCA1	100	90.404	ENSPPYG00000020703	SMARCA1	96	88.846	Pongo_abelii
ENSEASG00005008218	SMARCA1	74	91.631	ENSPCOG00000020722	SMARCA1	94	91.445	Propithecus_coquereli
ENSEASG00005008218	SMARCA1	91	94.049	ENSPVAG00000003805	SMARCA1	88	93.273	Pteropus_vampyrus
ENSEASG00005008218	SMARCA1	60	82.192	ENSPNYG00000012299	smarca5	92	80.717	Pundamilia_nyererei
ENSEASG00005008218	SMARCA1	100	92.727	ENSRNOG00000003762	Smarca1	94	92.277	Rattus_norvegicus
ENSEASG00005008218	SMARCA1	100	93.232	ENSRROG00000034167	SMARCA1	97	92.596	Rhinopithecus_roxellana
ENSEASG00005008218	SMARCA1	99	93.212	ENSSBOG00000020641	SMARCA1	100	93.191	Saimiri_boliviensis_boliviensis
ENSEASG00005008218	SMARCA1	99	82.942	ENSSHAG00000013518	SMARCA1	99	82.497	Sarcophilus_harrisii
ENSEASG00005008218	SMARCA1	99	79.367	ENSSFOG00015016794	smarca5	100	79.303	Scleropages_formosus
ENSEASG00005008218	SMARCA1	99	83.956	ENSSFOG00015009043	smarca1	98	82.488	Scleropages_formosus
ENSEASG00005008218	SMARCA1	99	78.947	ENSSMAG00000004801	smarca5	95	78.340	Scophthalmus_maximus
ENSEASG00005008218	SMARCA1	99	79.352	ENSSDUG00000020690	smarca5	96	78.068	Seriola_dumerili
ENSEASG00005008218	SMARCA1	99	79.352	ENSSLDG00000025190	smarca5	96	78.068	Seriola_lalandi_dorsalis
ENSEASG00005008218	SMARCA1	89	90.203	ENSSARG00000000842	SMARCA1	85	97.080	Sorex_araneus
ENSEASG00005008218	SMARCA1	96	88.613	ENSSPUG00000000590	SMARCA1	95	87.513	Sphenodon_punctatus
ENSEASG00005008218	SMARCA1	99	79.453	ENSSPAG00000002894	smarca5	95	81.042	Stegastes_partitus
ENSEASG00005008218	SMARCA1	99	94.589	ENSSSCG00000012649	SMARCA1	96	94.589	Sus_scrofa
ENSEASG00005008218	SMARCA1	99	88.866	ENSTGUG00000003899	-	100	88.360	Taeniopygia_guttata
ENSEASG00005008218	SMARCA1	99	79.656	ENSTRUG00000014094	smarca5	95	79.049	Takifugu_rubripes
ENSEASG00005008218	SMARCA1	99	79.247	ENSTNIG00000017717	smarca5	94	78.362	Tetraodon_nigroviridis
ENSEASG00005008218	SMARCA1	91	93.498	ENSTBEG00000014973	SMARCA1	92	93.498	Tupaia_belangeri
ENSEASG00005008218	SMARCA1	96	90.993	ENSTTRG00000006168	SMARCA1	99	90.890	Tursiops_truncatus
ENSEASG00005008218	SMARCA1	100	93.636	ENSUAMG00000020201	SMARCA1	97	92.115	Ursus_americanus
ENSEASG00005008218	SMARCA1	100	88.611	ENSUMAG00000004073	SMARCA1	97	97.080	Ursus_maritimus
ENSEASG00005008218	SMARCA1	83	97.343	ENSVPAG00000010492	-	80	97.343	Vicugna_pacos
ENSEASG00005008218	SMARCA1	100	93.737	ENSVVUG00000008878	SMARCA1	99	94.775	Vulpes_vulpes
ENSEASG00005008218	SMARCA1	99	85.455	ENSXETG00000001526	smarca1	99	85.556	Xenopus_tropicalis
ENSEASG00005008218	SMARCA1	99	79.453	ENSXCOG00000011170	smarca5	98	78.169	Xiphophorus_couchianus
ENSEASG00005008218	SMARCA1	99	79.453	ENSXMAG00000009678	smarca5	97	81.167	Xiphophorus_maculatus