EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEASG00005008488 (Gene tree)
Gene ID: -
Gene Symbol: NCL
Alias: C23|Nsr1
Full Name: nucleolin
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Minus strand
Length: 7668 bases
Position: chrPSZQ01005647.1:4520378-4528045
Accession: 7667
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005012460	RRM_1	PF00076.22	1.6e-58	1	4
ENSEASP00005012460	RRM_1	PF00076.22	1.6e-58	2	4
ENSEASP00005012460	RRM_1	PF00076.22	1.6e-58	3	4
ENSEASP00005012460	RRM_1	PF00076.22	1.6e-58	4	4
ENSEASP00005012455	RRM_1	PF00076.22	2.6e-58	1	4
ENSEASP00005012455	RRM_1	PF00076.22	2.6e-58	2	4
ENSEASP00005012455	RRM_1	PF00076.22	2.6e-58	3	4
ENSEASP00005012455	RRM_1	PF00076.22	2.6e-58	4	4
ENSEASP00005012464	RRM_1	PF00076.22	1.5e-41	1	3
ENSEASP00005012464	RRM_1	PF00076.22	1.5e-41	2	3
ENSEASP00005012464	RRM_1	PF00076.22	1.5e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005013527	NCL-202	1929	-	ENSEASP00005012460	642 (aa)	-	-
ENSEAST00005013532	NCL-203	1422	-	ENSEASP00005012464	473 (aa)	-	-
ENSEAST00005013522	NCL-201	2109	-	ENSEASP00005012455	702 (aa)	-	-

Gene Model

Click here to download ENSEASG00005008488's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005008488's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEASG00005008488	NCL	53	31.638	ENSEASG00005007393	TIA1	74	31.667
ENSEASG00005008488	NCL	54	32.432	ENSEASG00005014119	PABPC4	53	30.000
ENSEASG00005008488	NCL	54	32.184	ENSEASG00005002810	PABPC1	58	32.184

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005008488	NCL	88	97.267	ENSG00000115053	NCL	100	90.203	Homo_sapiens
ENSEASG00005008488	NCL	91	91.913	ENSAMEG00000016289	NCL	89	92.691	Ailuropoda_melanoleuca
ENSEASG00005008488	NCL	92	98.571	ENSANAG00000035814	-	98	86.325	Aotus_nancymaae
ENSEASG00005008488	NCL	96	77.586	ENSANAG00000024378	-	84	82.540	Aotus_nancymaae
ENSEASG00005008488	NCL	100	76.160	ENSBTAG00000051320	-	73	91.080	Bos_taurus
ENSEASG00005008488	NCL	76	92.977	ENSBTAG00000026909	-	92	92.977	Bos_taurus
ENSEASG00005008488	NCL	91	90.984	ENSBTAG00000050728	-	82	90.984	Bos_taurus
ENSEASG00005008488	NCL	96	86.842	ENSBTAG00000016174	NCL	98	90.113	Bos_taurus
ENSEASG00005008488	NCL	86	98.571	ENSCJAG00000013538	NCL	98	85.472	Callithrix_jacchus
ENSEASG00005008488	NCL	93	98.214	ENSCAFG00000011037	NCL	89	91.770	Canis_familiaris
ENSEASG00005008488	NCL	85	98.929	ENSCAFG00020023145	NCL	89	91.598	Canis_lupus_dingo
ENSEASG00005008488	NCL	91	79.630	ENSCHIG00000026149	-	90	80.247	Capra_hircus
ENSEASG00005008488	NCL	87	89.052	ENSCHIG00000010894	-	100	89.583	Capra_hircus
ENSEASG00005008488	NCL	85	77.727	ENSCHIG00000012143	-	86	73.496	Capra_hircus
ENSEASG00005008488	NCL	100	85.417	ENSCHIG00000021052	-	90	97.203	Capra_hircus
ENSEASG00005008488	NCL	87	95.638	ENSTSYG00000029779	-	91	97.122	Carlito_syrichta
ENSEASG00005008488	NCL	84	96.306	ENSTSYG00000004355	-	89	85.162	Carlito_syrichta
ENSEASG00005008488	NCL	90	67.036	ENSTSYG00000036886	-	83	79.910	Carlito_syrichta
ENSEASG00005008488	NCL	94	96.786	ENSCAPG00000009405	NCL	99	80.339	Cavia_aperea
ENSEASG00005008488	NCL	94	96.786	ENSCPOG00000001034	NCL	98	82.744	Cavia_porcellus
ENSEASG00005008488	NCL	96	94.643	ENSCCAG00000021040	-	98	85.328	Cebus_capucinus
ENSEASG00005008488	NCL	88	87.940	ENSCCAG00000000551	-	93	75.521	Cebus_capucinus
ENSEASG00005008488	NCL	91	87.733	ENSCATG00000037033	NCL	98	89.205	Cercocebus_atys
ENSEASG00005008488	NCL	100	96.786	ENSCLAG00000013080	NCL	98	82.037	Chinchilla_lanigera
ENSEASG00005008488	NCL	70	96.197	ENSCSAG00000006660	NCL	97	96.197	Chlorocebus_sabaeus
ENSEASG00005008488	NCL	58	81.183	ENSCHOG00000012860	NCL	88	75.737	Choloepus_hoffmanni
ENSEASG00005008488	NCL	77	92.010	ENSCANG00000036756	NCL	88	92.969	Colobus_angolensis_palliatus
ENSEASG00005008488	NCL	91	80.620	ENSCGRG00001024315	-	89	80.000	Cricetulus_griseus_chok1gshd
ENSEASG00005008488	NCL	92	67.231	ENSCGRG00001022350	-	93	67.337	Cricetulus_griseus_chok1gshd
ENSEASG00005008488	NCL	80	88.654	ENSCGRG00000017894	-	88	80.195	Cricetulus_griseus_crigri
ENSEASG00005008488	NCL	92	65.391	ENSCGRG00000000507	-	91	65.839	Cricetulus_griseus_crigri
ENSEASG00005008488	NCL	99	77.850	ENSDNOG00000046347	-	97	74.079	Dasypus_novemcinctus
ENSEASG00005008488	NCL	91	85.604	ENSDNOG00000010783	-	98	84.419	Dasypus_novemcinctus
ENSEASG00005008488	NCL	86	81.395	ENSDORG00000023596	-	90	68.274	Dipodomys_ordii
ENSEASG00005008488	NCL	59	83.641	ENSDORG00000012513	-	89	76.672	Dipodomys_ordii
ENSEASG00005008488	NCL	59	90.789	ENSETEG00000018937	-	85	80.325	Echinops_telfairi
ENSEASG00005008488	NCL	68	61.678	ENSETEG00000008553	-	88	61.261	Echinops_telfairi
ENSEASG00005008488	NCL	59	90.186	ENSETEG00000014756	-	86	90.237	Echinops_telfairi
ENSEASG00005008488	NCL	86	69.048	ENSETEG00000008139	-	92	68.720	Echinops_telfairi
ENSEASG00005008488	NCL	100	99.145	ENSECAG00000021868	NCL	98	99.145	Equus_caballus
ENSEASG00005008488	NCL	87	80.424	ENSEEUG00000005913	NCL	85	78.699	Erinaceus_europaeus
ENSEASG00005008488	NCL	91	91.008	ENSFCAG00000027622	NCL	89	89.922	Felis_catus
ENSEASG00005008488	NCL	91	85.185	ENSFDAG00000014291	NCL	90	82.562	Fukomys_damarensis
ENSEASG00005008488	NCL	100	90.947	ENSGGOG00000004300	NCL	98	91.158	Gorilla_gorilla
ENSEASG00005008488	NCL	55	83.182	ENSHGLG00000005133	-	90	74.126	Heterocephalus_glaber_female
ENSEASG00005008488	NCL	68	94.761	ENSHGLG00000002031	-	98	82.768	Heterocephalus_glaber_female
ENSEASG00005008488	NCL	91	73.791	ENSHGLG00000011069	-	53	91.364	Heterocephalus_glaber_female
ENSEASG00005008488	NCL	90	76.592	ENSHGLG00100000745	-	79	84.615	Heterocephalus_glaber_male
ENSEASG00005008488	NCL	100	96.786	ENSHGLG00100014537	-	98	82.203	Heterocephalus_glaber_male
ENSEASG00005008488	NCL	86	87.302	ENSJJAG00000016165	Ncl	92	75.994	Jaculus_jaculus
ENSEASG00005008488	NCL	90	80.909	ENSLAFG00000013061	NCL	89	71.118	Loxodonta_africana
ENSEASG00005008488	NCL	91	87.888	ENSMFAG00000040385	NCL	98	89.489	Macaca_fascicularis
ENSEASG00005008488	NCL	100	90.737	ENSMMUG00000018094	NCL	97	90.737	Macaca_mulatta
ENSEASG00005008488	NCL	100	90.737	ENSMNEG00000023839	NCL	92	98.571	Macaca_nemestrina
ENSEASG00005008488	NCL	86	98.571	ENSMLEG00000028935	NCL	98	89.347	Mandrillus_leucophaeus
ENSEASG00005008488	NCL	100	88.352	ENSMICG00000002538	-	89	86.801	Microcebus_murinus
ENSEASG00005008488	NCL	92	80.992	ENSMICG00000029975	-	83	78.824	Microcebus_murinus
ENSEASG00005008488	NCL	91	78.106	MGP_CAROLIEiJ_G0014362	Ncl	89	78.261	Mus_caroli
ENSEASG00005008488	NCL	91	77.950	ENSMUSG00000026234	Ncl	89	77.795	Mus_musculus
ENSEASG00005008488	NCL	91	77.329	MGP_PahariEiJ_G0027599	Ncl	89	77.484	Mus_pahari
ENSEASG00005008488	NCL	91	79.037	MGP_SPRETEiJ_G0015164	Ncl	89	78.571	Mus_spretus
ENSEASG00005008488	NCL	100	97.857	ENSMLUG00000014547	NCL	89	85.054	Myotis_lucifugus
ENSEASG00005008488	NCL	91	79.695	ENSNGAG00000002454	-	78	93.636	Nannospalax_galili
ENSEASG00005008488	NCL	71	72.559	ENSNGAG00000006188	-	54	72.632	Nannospalax_galili
ENSEASG00005008488	NCL	87	75.769	ENSNLEG00000014107	-	95	76.449	Nomascus_leucogenys
ENSEASG00005008488	NCL	100	69.841	ENSODEG00000007803	-	98	63.375	Octodon_degus
ENSEASG00005008488	NCL	91	80.249	ENSODEG00000003281	-	89	78.760	Octodon_degus
ENSEASG00005008488	NCL	99	68.432	ENSODEG00000002441	-	88	87.273	Octodon_degus
ENSEASG00005008488	NCL	81	93.119	ENSODEG00000002748	-	85	76.860	Octodon_degus
ENSEASG00005008488	NCL	95	94.286	ENSOCUG00000004312	NCL	98	80.000	Oryctolagus_cuniculus
ENSEASG00005008488	NCL	74	87.795	ENSOGAG00000027852	NCL	88	97.727	Otolemur_garnettii
ENSEASG00005008488	NCL	91	84.438	ENSOARG00000020709	-	90	83.821	Ovis_aries
ENSEASG00005008488	NCL	88	86.598	ENSOARG00000013270	-	96	91.209	Ovis_aries
ENSEASG00005008488	NCL	71	91.379	ENSOARG00000013710	-	73	89.819	Ovis_aries
ENSEASG00005008488	NCL	62	78.341	ENSOARG00000004072	-	71	77.376	Ovis_aries
ENSEASG00005008488	NCL	100	90.275	ENSPPAG00000011619	NCL	98	91.158	Pan_paniscus
ENSEASG00005008488	NCL	94	99.286	ENSPPRG00000012603	NCL	89	90.994	Panthera_pardus
ENSEASG00005008488	NCL	91	91.770	ENSPTIG00000010393	NCL	89	90.839	Panthera_tigris_altaica
ENSEASG00005008488	NCL	100	90.947	ENSPTRG00000013025	NCL	98	91.158	Pan_troglodytes
ENSEASG00005008488	NCL	91	87.888	ENSPANG00000010292	NCL	98	89.489	Papio_anubis
ENSEASG00005008488	NCL	86	98.571	ENSPPYG00000013265	NCL	89	82.280	Pongo_abelii
ENSEASG00005008488	NCL	90	93.548	ENSPCOG00000004160	-	90	93.636	Propithecus_coquereli
ENSEASG00005008488	NCL	90	98.182	ENSPCOG00000003051	-	89	86.862	Propithecus_coquereli
ENSEASG00005008488	NCL	91	87.635	ENSPVAG00000000297	NCL	98	89.250	Pteropus_vampyrus
ENSEASG00005008488	NCL	91	78.605	ENSRNOG00000018273	Ncl	89	80.775	Rattus_norvegicus
ENSEASG00005008488	NCL	91	96.886	ENSRBIG00000035396	-	90	97.273	Rhinopithecus_bieti
ENSEASG00005008488	NCL	91	82.710	ENSRBIG00000037525	-	89	82.710	Rhinopithecus_bieti
ENSEASG00005008488	NCL	90	98.182	ENSRROG00000028756	-	85	98.221	Rhinopithecus_roxellana
ENSEASG00005008488	NCL	99	83.713	ENSRROG00000036103	-	97	85.809	Rhinopithecus_roxellana
ENSEASG00005008488	NCL	86	91.429	ENSSBOG00000027549	-	91	88.838	Saimiri_boliviensis_boliviensis
ENSEASG00005008488	NCL	88	96.583	ENSSBOG00000029193	-	98	88.244	Saimiri_boliviensis_boliviensis
ENSEASG00005008488	NCL	87	68.370	ENSSBOG00000023094	-	87	68.281	Saimiri_boliviensis_boliviensis
ENSEASG00005008488	NCL	91	87.865	ENSSSCG00000016275	NCL	89	88.940	Sus_scrofa
ENSEASG00005008488	NCL	81	76.071	ENSTBEG00000002469	-	62	81.429	Tupaia_belangeri
ENSEASG00005008488	NCL	61	84.697	ENSTBEG00000001546	-	85	79.479	Tupaia_belangeri
ENSEASG00005008488	NCL	90	96.364	ENSTTRG00000009094	NCL	89	88.647	Tursiops_truncatus
ENSEASG00005008488	NCL	96	93.974	ENSUAMG00000005639	NCL	100	96.832	Ursus_americanus
ENSEASG00005008488	NCL	93	99.643	ENSUMAG00000015789	NCL	89	91.446	Ursus_maritimus
ENSEASG00005008488	NCL	87	89.683	ENSVPAG00000001796	NCL	67	89.683	Vicugna_pacos
ENSEASG00005008488	NCL	100	98.921	ENSVVUG00000025564	NCL	98	89.474	Vulpes_vulpes