EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEASG00005008513 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Plus strand
Length: 408439 bases
Position: chrPSZQ01006590.1:2901167-3309605
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005012192	TUDOR	PF00567.24	6.7e-28	1	1
ENSEASP00005012188	TUDOR	PF00567.24	7.2e-28	1	1
ENSEASP00005012192	SNase	PF00565.17	4.9e-69	1	5
ENSEASP00005012192	SNase	PF00565.17	4.9e-69	2	5
ENSEASP00005012192	SNase	PF00565.17	4.9e-69	3	5
ENSEASP00005012192	SNase	PF00565.17	4.9e-69	4	5
ENSEASP00005012192	SNase	PF00565.17	4.9e-69	5	5
ENSEASP00005012188	SNase	PF00565.17	7.1e-67	1	4
ENSEASP00005012188	SNase	PF00565.17	7.1e-67	2	4
ENSEASP00005012188	SNase	PF00565.17	7.1e-67	3	4
ENSEASP00005012188	SNase	PF00565.17	7.1e-67	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005013245	SND1-202	3176	-	ENSEASP00005012192	926 (aa)	-	-
ENSEAST00005013241	SND1-201	3236	-	ENSEASP00005012188	946 (aa)	-	-

Gene Model

Click here to download ENSEASG00005008513's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005008513's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005008513	SND1	100	97.408	ENSG00000197157	SND1	100	97.408	Homo_sapiens
ENSEASG00005008513	SND1	100	82.524	ENSAPOG00000017599	snd1	99	83.370	Acanthochromis_polyacanthus
ENSEASG00005008513	SND1	100	97.414	ENSAMEG00000004664	SND1	94	97.414	Ailuropoda_melanoleuca
ENSEASG00005008513	SND1	98	80.748	ENSACIG00000003551	snd1	99	80.635	Amphilophus_citrinellus
ENSEASG00005008513	SND1	100	82.309	ENSAOCG00000014166	snd1	99	83.151	Amphiprion_ocellaris
ENSEASG00005008513	SND1	100	82.309	ENSAPEG00000007067	snd1	99	83.151	Amphiprion_percula
ENSEASG00005008513	SND1	98	81.648	ENSATEG00000018475	snd1	88	84.361	Anabas_testudineus
ENSEASG00005008513	SND1	100	97.624	ENSANAG00000034463	SND1	100	97.624	Aotus_nancymaae
ENSEASG00005008513	SND1	99	81.838	ENSACLG00000022897	snd1	99	82.804	Astatotilapia_calliptera
ENSEASG00005008513	SND1	99	83.225	ENSAMXG00000016318	snd1	98	83.790	Astyanax_mexicanus
ENSEASG00005008513	SND1	100	97.192	ENSBTAG00000010692	SND1	100	97.192	Bos_taurus
ENSEASG00005008513	SND1	98	46.270	WBGene00006626	tsn-1	98	46.703	Caenorhabditis_elegans
ENSEASG00005008513	SND1	100	97.408	ENSCJAG00000017668	SND1	100	97.408	Callithrix_jacchus
ENSEASG00005008513	SND1	100	97.624	ENSCAFG00000001700	SND1	100	97.624	Canis_familiaris
ENSEASG00005008513	SND1	100	97.624	ENSCAFG00020021639	SND1	100	97.624	Canis_lupus_dingo
ENSEASG00005008513	SND1	100	97.516	ENSCHIG00000023390	SND1	100	97.516	Capra_hircus
ENSEASG00005008513	SND1	73	96.404	ENSTSYG00000004979	SND1	96	99.120	Carlito_syrichta
ENSEASG00005008513	SND1	99	83.188	ENSCAPG00000010677	SND1	98	83.224	Cavia_aperea
ENSEASG00005008513	SND1	100	96.436	ENSCPOG00000006251	SND1	100	96.436	Cavia_porcellus
ENSEASG00005008513	SND1	100	97.732	ENSCCAG00000036847	SND1	100	97.732	Cebus_capucinus
ENSEASG00005008513	SND1	100	97.624	ENSCATG00000035214	SND1	100	97.624	Cercocebus_atys
ENSEASG00005008513	SND1	100	96.760	ENSCLAG00000011796	SND1	98	98.822	Chinchilla_lanigera
ENSEASG00005008513	SND1	100	97.624	ENSCSAG00000010182	SND1	100	97.624	Chlorocebus_sabaeus
ENSEASG00005008513	SND1	78	91.176	ENSCHOG00000002218	SND1	86	91.176	Choloepus_hoffmanni
ENSEASG00005008513	SND1	100	90.713	ENSCPBG00000018094	SND1	98	91.630	Chrysemys_picta_bellii
ENSEASG00005008513	SND1	98	56.970	ENSCING00000000524	-	98	56.970	Ciona_intestinalis
ENSEASG00005008513	SND1	99	56.926	ENSCSAVG00000008807	-	99	57.065	Ciona_savignyi
ENSEASG00005008513	SND1	100	97.624	ENSCANG00000035119	SND1	100	97.624	Colobus_angolensis_palliatus
ENSEASG00005008513	SND1	100	95.680	ENSCGRG00001022514	Snd1	99	96.921	Cricetulus_griseus_chok1gshd
ENSEASG00005008513	SND1	97	95.667	ENSCGRG00000012277	Snd1	99	95.667	Cricetulus_griseus_crigri
ENSEASG00005008513	SND1	98	82.948	ENSCSEG00000008661	snd1	97	84.033	Cynoglossus_semilaevis
ENSEASG00005008513	SND1	100	82.740	ENSCVAG00000010316	snd1	100	82.373	Cyprinodon_variegatus
ENSEASG00005008513	SND1	100	83.190	ENSDARG00000006766	snd1	97	87.230	Danio_rerio
ENSEASG00005008513	SND1	97	94.574	ENSDNOG00000006795	SND1	100	94.574	Dasypus_novemcinctus
ENSEASG00005008513	SND1	100	97.084	ENSDORG00000000336	Snd1	100	97.084	Dipodomys_ordii
ENSEASG00005008513	SND1	98	50.591	FBgn0035121	Tudor-SN	98	50.698	Drosophila_melanogaster
ENSEASG00005008513	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSEASG00005008513	SND1	58	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSEASG00005008513	SND1	100	99.892	ENSECAG00000011451	SND1	100	99.892	Equus_caballus
ENSEASG00005008513	SND1	100	85.421	ENSEEUG00000014737	SND1	100	85.421	Erinaceus_europaeus
ENSEASG00005008513	SND1	99	81.230	ENSELUG00000001805	snd1	95	82.127	Esox_lucius
ENSEASG00005008513	SND1	100	97.624	ENSFCAG00000008289	SND1	100	97.624	Felis_catus
ENSEASG00005008513	SND1	100	96.760	ENSFDAG00000015881	SND1	100	96.760	Fukomys_damarensis
ENSEASG00005008513	SND1	99	80.892	ENSFHEG00000004093	snd1	97	84.633	Fundulus_heteroclitus
ENSEASG00005008513	SND1	63	74.859	ENSGMOG00000018932	snd1	64	74.859	Gadus_morhua
ENSEASG00005008513	SND1	100	82.956	ENSGAFG00000008421	snd1	99	83.814	Gambusia_affinis
ENSEASG00005008513	SND1	100	53.042	ENSGACG00000019793	snd1	98	53.478	Gasterosteus_aculeatus
ENSEASG00005008513	SND1	100	97.624	ENSGGOG00000009614	SND1	100	97.624	Gorilla_gorilla
ENSEASG00005008513	SND1	99	82.340	ENSHBUG00000019135	snd1	99	82.804	Haplochromis_burtoni
ENSEASG00005008513	SND1	100	96.436	ENSHGLG00000003618	SND1	98	98.485	Heterocephalus_glaber_female
ENSEASG00005008513	SND1	99	95.983	ENSHGLG00100012449	SND1	100	95.983	Heterocephalus_glaber_male
ENSEASG00005008513	SND1	100	81.553	ENSHCOG00000005266	snd1	98	82.728	Hippocampus_comes
ENSEASG00005008513	SND1	100	81.701	ENSIPUG00000013279	snd1	98	82.694	Ictalurus_punctatus
ENSEASG00005008513	SND1	100	97.084	ENSSTOG00000002140	SND1	100	97.084	Ictidomys_tridecemlineatus
ENSEASG00005008513	SND1	100	97.408	ENSJJAG00000009561	Snd1	100	97.408	Jaculus_jaculus
ENSEASG00005008513	SND1	100	82.740	ENSKMAG00000016997	snd1	98	83.718	Kryptolebias_marmoratus
ENSEASG00005008513	SND1	100	84.732	ENSLBEG00000013563	snd1	99	82.166	Labrus_bergylta
ENSEASG00005008513	SND1	99	84.532	ENSLOCG00000015537	snd1	98	84.532	Lepisosteus_oculatus
ENSEASG00005008513	SND1	100	96.652	ENSLAFG00000009696	SND1	100	96.652	Loxodonta_africana
ENSEASG00005008513	SND1	100	97.624	ENSMFAG00000038114	SND1	100	97.624	Macaca_fascicularis
ENSEASG00005008513	SND1	100	97.624	ENSMMUG00000015432	SND1	100	97.624	Macaca_mulatta
ENSEASG00005008513	SND1	100	97.624	ENSMNEG00000039808	SND1	100	97.624	Macaca_nemestrina
ENSEASG00005008513	SND1	100	97.516	ENSMLEG00000029040	SND1	100	97.516	Mandrillus_leucophaeus
ENSEASG00005008513	SND1	99	82.538	ENSMAMG00000011739	snd1	98	83.205	Mastacembelus_armatus
ENSEASG00005008513	SND1	99	81.838	ENSMZEG00005005681	snd1	99	82.804	Maylandia_zebra
ENSEASG00005008513	SND1	100	97.408	ENSMICG00000000097	SND1	100	97.408	Microcebus_murinus
ENSEASG00005008513	SND1	100	96.544	ENSMOCG00000005040	Snd1	100	96.544	Microtus_ochrogaster
ENSEASG00005008513	SND1	100	82.093	ENSMMOG00000001795	snd1	99	82.932	Mola_mola
ENSEASG00005008513	SND1	99	94.304	ENSMODG00000015182	SND1	99	94.304	Monodelphis_domestica
ENSEASG00005008513	SND1	100	81.985	ENSMALG00000012071	snd1	98	82.766	Monopterus_albus
ENSEASG00005008513	SND1	100	96.112	MGP_CAROLIEiJ_G0028159	Snd1	99	98.145	Mus_caroli
ENSEASG00005008513	SND1	100	95.896	ENSMUSG00000001424	Snd1	100	95.896	Mus_musculus
ENSEASG00005008513	SND1	100	96.112	MGP_PahariEiJ_G0021917	Snd1	100	98.145	Mus_pahari
ENSEASG00005008513	SND1	100	96.112	MGP_SPRETEiJ_G0029159	Snd1	100	96.112	Mus_spretus
ENSEASG00005008513	SND1	100	96.976	ENSMPUG00000006545	SND1	100	96.976	Mustela_putorius_furo
ENSEASG00005008513	SND1	97	95.719	ENSMLUG00000017130	SND1	99	95.719	Myotis_lucifugus
ENSEASG00005008513	SND1	100	96.436	ENSNGAG00000011186	Snd1	100	96.436	Nannospalax_galili
ENSEASG00005008513	SND1	99	81.730	ENSNBRG00000006681	snd1	99	82.694	Neolamprologus_brichardi
ENSEASG00005008513	SND1	100	97.516	ENSNLEG00000012263	SND1	99	99.494	Nomascus_leucogenys
ENSEASG00005008513	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSEASG00005008513	SND1	100	96.760	ENSODEG00000011502	SND1	100	96.760	Octodon_degus
ENSEASG00005008513	SND1	99	81.946	ENSONIG00000011481	snd1	96	82.913	Oreochromis_niloticus
ENSEASG00005008513	SND1	98	93.031	ENSOANG00000000817	SND1	99	92.442	Ornithorhynchus_anatinus
ENSEASG00005008513	SND1	100	95.896	ENSOCUG00000001620	SND1	100	95.896	Oryctolagus_cuniculus
ENSEASG00005008513	SND1	98	82.637	ENSORLG00000015201	snd1	98	83.790	Oryzias_latipes
ENSEASG00005008513	SND1	98	82.747	ENSORLG00020013991	snd1	98	83.867	Oryzias_latipes_hni
ENSEASG00005008513	SND1	98	82.747	ENSORLG00015012436	snd1	98	82.747	Oryzias_latipes_hsok
ENSEASG00005008513	SND1	100	81.877	ENSOMEG00000006406	snd1	98	83.058	Oryzias_melastigma
ENSEASG00005008513	SND1	100	97.306	ENSOGAG00000013356	SND1	94	97.306	Otolemur_garnettii
ENSEASG00005008513	SND1	97	94.562	ENSOARG00000002149	SND1	100	94.562	Ovis_aries
ENSEASG00005008513	SND1	100	97.516	ENSPPAG00000042947	SND1	100	97.516	Pan_paniscus
ENSEASG00005008513	SND1	100	97.624	ENSPPRG00000004494	SND1	100	97.624	Panthera_pardus
ENSEASG00005008513	SND1	100	97.516	ENSPTIG00000014214	SND1	99	99.105	Panthera_tigris_altaica
ENSEASG00005008513	SND1	100	97.516	ENSPTRG00000023911	SND1	100	97.516	Pan_troglodytes
ENSEASG00005008513	SND1	97	97.556	ENSPANG00000011997	SND1	99	97.556	Papio_anubis
ENSEASG00005008513	SND1	99	80.522	ENSPKIG00000023494	snd1	98	80.832	Paramormyrops_kingsleyae
ENSEASG00005008513	SND1	92	81.647	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSEASG00005008513	SND1	100	96.436	ENSPEMG00000010240	Snd1	100	96.436	Peromyscus_maniculatus_bairdii
ENSEASG00005008513	SND1	97	72.475	ENSPMAG00000007915	-	99	72.475	Petromyzon_marinus
ENSEASG00005008513	SND1	100	94.816	ENSPCIG00000011561	SND1	100	94.816	Phascolarctos_cinereus
ENSEASG00005008513	SND1	100	82.416	ENSPFOG00000001557	snd1	99	83.260	Poecilia_formosa
ENSEASG00005008513	SND1	100	82.416	ENSPLAG00000018459	snd1	96	83.260	Poecilia_latipinna
ENSEASG00005008513	SND1	100	82.848	ENSPMEG00000006803	snd1	99	83.698	Poecilia_mexicana
ENSEASG00005008513	SND1	100	82.740	ENSPREG00000002189	snd1	99	83.589	Poecilia_reticulata
ENSEASG00005008513	SND1	93	99.132	ENSPPYG00000017972	SND1	100	99.132	Pongo_abelii
ENSEASG00005008513	SND1	100	85.313	ENSPCAG00000011305	SND1	100	85.313	Procavia_capensis
ENSEASG00005008513	SND1	100	97.408	ENSPCOG00000026791	SND1	100	97.408	Propithecus_coquereli
ENSEASG00005008513	SND1	100	95.680	ENSPVAG00000013945	SND1	100	95.680	Pteropus_vampyrus
ENSEASG00005008513	SND1	99	81.838	ENSPNYG00000000932	snd1	99	82.804	Pundamilia_nyererei
ENSEASG00005008513	SND1	100	82.454	ENSPNAG00000001206	snd1	98	83.388	Pygocentrus_nattereri
ENSEASG00005008513	SND1	99	95.779	ENSRNOG00000031173	Snd1	99	95.779	Rattus_norvegicus
ENSEASG00005008513	SND1	73	96.494	ENSRBIG00000027782	-	93	99.430	Rhinopithecus_bieti
ENSEASG00005008513	SND1	100	97.624	ENSRROG00000033020	SND1	100	97.624	Rhinopithecus_roxellana
ENSEASG00005008513	SND1	100	97.624	ENSSBOG00000032461	SND1	100	97.624	Saimiri_boliviensis_boliviensis
ENSEASG00005008513	SND1	98	91.372	ENSSHAG00000015359	SND1	100	91.372	Sarcophilus_harrisii
ENSEASG00005008513	SND1	100	81.418	ENSSFOG00015001103	snd1	98	82.475	Scleropages_formosus
ENSEASG00005008513	SND1	98	82.618	ENSSMAG00000001932	snd1	93	82.366	Scophthalmus_maximus
ENSEASG00005008513	SND1	100	82.309	ENSSDUG00000002699	snd1	92	83.151	Seriola_dumerili
ENSEASG00005008513	SND1	100	75.189	ENSSLDG00000001950	snd1	98	75.930	Seriola_lalandi_dorsalis
ENSEASG00005008513	SND1	86	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSEASG00005008513	SND1	73	85.448	ENSSPUG00000017586	SND1	96	87.826	Sphenodon_punctatus
ENSEASG00005008513	SND1	73	82.208	ENSSPAG00000021398	snd1	96	86.562	Stegastes_partitus
ENSEASG00005008513	SND1	100	97.300	ENSSSCG00000016590	SND1	100	97.300	Sus_scrofa
ENSEASG00005008513	SND1	99	82.671	ENSTRUG00000014067	snd1	98	82.398	Takifugu_rubripes
ENSEASG00005008513	SND1	100	81.985	ENSTNIG00000011019	snd1	95	87.047	Tetraodon_nigroviridis
ENSEASG00005008513	SND1	93	91.551	ENSTBEG00000003999	SND1	100	93.278	Tupaia_belangeri
ENSEASG00005008513	SND1	100	92.873	ENSTTRG00000006059	SND1	100	92.873	Tursiops_truncatus
ENSEASG00005008513	SND1	92	99.055	ENSUAMG00000005604	-	94	99.055	Ursus_americanus
ENSEASG00005008513	SND1	70	89.406	ENSUAMG00000002820	-	87	89.305	Ursus_americanus
ENSEASG00005008513	SND1	100	97.408	ENSUMAG00000005960	SND1	100	97.408	Ursus_maritimus
ENSEASG00005008513	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSEASG00005008513	SND1	100	97.408	ENSVVUG00000007226	SND1	100	97.408	Vulpes_vulpes
ENSEASG00005008513	SND1	97	83.463	ENSXETG00000023043	snd1	98	86.275	Xenopus_tropicalis
ENSEASG00005008513	SND1	92	80.163	ENSXCOG00000013629	snd1	99	81.473	Xiphophorus_couchianus
ENSEASG00005008513	SND1	100	82.956	ENSXMAG00000011469	snd1	99	83.807	Xiphophorus_maculatus